EY755964

Overview
NameEY755964
Unique NameEY755964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2639 contig Csv1_Contig2639:252..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY755964 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.859e-35
Identity = 87/173 (50.29%), Postives = 104/173 (60.12%), Query Frame = 2
Query:    5 RPGVLSPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 523
            + GVL+ GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      +Y KLLA R+KE +E+R E +AK+R
Sbjct:   64 KQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of EY755964 vs. ExPASy Swiss-Prot
Match: RS6_ONCMY (40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.086e-34
Identity = 86/173 (49.71%), Postives = 104/173 (60.12%), Query Frame = 2
Query:    5 RPGVLSPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 523
            + GVL+ GRVRLLL +G  C+                 CI   +LSVLNLVI+KKGE D+PGLTD+  PR  GPKRASKIRKLFNL+KEDDVR+YV   RR  T +  K  +KAP+IQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R
Sbjct:   64 KQGVLTHGRVRLLLAKGHSCYRPRRTGERKRKSVRG--CIGDANLSVLNLVIIKKGEKDIPGLTDSTVPRRLGPKRASKIRKLFNLAKEDDVRQYV--VRRPLTKEGKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of EY755964 vs. ExPASy Swiss-Prot
Match: RS6_XENLA (40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.161e-34
Identity = 86/173 (49.71%), Postives = 102/173 (58.96%), Query Frame = 2
Query:    5 RPGVLSPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 523
            + GVL+ GRVRLLL +G  C+                 CIV  +LSVLNLVIV+KGE D+PGLTD   PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R KE +E+R E +AK+R
Sbjct:   64 KQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVRKGEKDIPGLTDNTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLAKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRSKEAKEKRQEQIAKRR 232          
BLAST of EY755964 vs. ExPASy Swiss-Prot
Match: RS6_APLCA (40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 88/175 (50.29%), Postives = 103/175 (58.86%), Query Frame = 2
Query:    5 RPGVLSPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKV-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 526
            + GVL+  RVRLLL +   C+                 CIV  +LSVL+LVI+KKGE D+PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   RR    + GKK  SKAPKIQRLVTP+ L                      EY KLLA R+KE +ER+ E   +KRS
Sbjct:   64 KQGVLTATRVRLLLDKNHSCYRPRRTGERKRKSVRG--CIVDSNLSVLSLVIIKKGEQDIPGLTDKTIPRRLGPKRASKIRKLFNLSKEDDVRQYV--VRRPLPERDGKKAKSKAPKIQRLVTPVVLQRKRARMALKKKRVTKKREDHAEYTKLLAQRMKEAKERKME---RKRS 231          
BLAST of EY755964 vs. ExPASy Swiss-Prot
Match: RS6_SPOFR (40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 84/178 (47.19%), Postives = 102/178 (57.30%), Query Frame = 2
Query:    5 RPGVLSPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS----KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 526
            + GVL+  RVRLL+ +G  C+                 CIV  +LSVL LVIV+KGE ++PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   +R    K GK+ +    KAPKIQRLVTP+ L                      +Y KLLA R KE + RR E L ++RS
Sbjct:   64 KQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG--CIVDANLSVLALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKQSENDYAKLLAQRKKESKVRRQEELKRRRS 237          
BLAST of EY755964 vs. ExPASy Swiss-Prot
Match: RS6_GLOMM (40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 85/174 (48.85%), Postives = 100/174 (57.47%), Query Frame = 2
Query:    5 RPGVLSPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 523
            + GVL+  RVRLLL +G  C+                 CIV  ++SVL LVIVKKGE D+PGLTDT  PR  GPKRASKIRKL+NLSK DDVR YV   RR    K  KK +SKAPKIQRL+TP+ L                      +Y KLLA R KE + +R E  AK+R
Sbjct:   64 KQGVLTHDRVRLLLKKGHSCYRPRRTGERKRKSVRG--CIVDANMSVLALVIVKKGEKDIPGLTDTSVPRRLGPKRASKIRKLYNLSKVDDVRPYV--IRRPLPAKDNKKAISKAPKIQRLITPVVLQRKRRRIALKKKRQAASKEAAADYAKLLAQRKKESKAKREE--AKRR 231          
BLAST of EY755964 vs. ExPASy Swiss-Prot
Match: RS6_DROME (40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 83/174 (47.70%), Postives = 101/174 (58.05%), Query Frame = 2
Query:    5 RPGVLSPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 523
            + GVL+ GRVRLLL +G  C+                 CIV  ++SVL LV++KKGE D+PGLTDT  PR  GPKRASKIRKL+NLSKEDDVR++V   RR    K  KK  SKAPKIQRL+TP+ L                      +Y KLL  R KE + +R E  AK+R
Sbjct:   64 KQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRG--CIVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFV--VRRPLPAKDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREE--AKRR 231          
BLAST of EY755964 vs. ExPASy Swiss-Prot
Match: RS6_BRAFL (40S ribosomal protein S6 OS=Branchiostoma floridae GN=RPS6 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31
Identity = 86/175 (49.14%), Postives = 99/175 (56.57%), Query Frame = 2
Query:    5 RPGVLSPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 526
            + GVL+ GRVRLLL +G  C+                 CIV  +LSVLNLVI+KKGE D+PGLTDT  PR  GPKRA +IRKLFNL+KEDDVR+YV   RR    K GKK   K PKIQRL+TP  L                       Y KLLA R KE+RE      AK+RS
Sbjct:   64 KQGVLTNGRVRLLLGKGHSCYRPRRTGERKRKSVRG--CIVDSNLSVLNLVILKKGEQDIPGLTDTTIPRRLGPKRAGRIRKLFNLNKEDDVRQYV--VRRPLPQKEGKKQKFKTPKIQRLITPQRLQRKRHMRAVKRRRYAKQREEEATYAKLLAKRKKEEREAH----AKRRS 230          
BLAST of EY755964 vs. ExPASy Swiss-Prot
Match: RS6_MANSE (40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31
Identity = 82/178 (46.07%), Postives = 101/178 (56.74%), Query Frame = 2
Query:    5 RPGVLSPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS----KAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRS 526
            + GVL+  RVRLL+ +G  C+                 CIV  +LSVL LVIV+KGE ++PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   +     K GK+ +    KAPKIQRLVTP+ L                      +Y KLLA R KE + RR E + ++RS
Sbjct:   64 KQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG--CIVDANLSVLALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKALLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIKRRRS 237          
BLAST of EY755964 vs. ExPASy Swiss-Prot
Match: RS6_YARLI (40S ribosomal protein S6 OS=Yarrowia lipolytica GN=RPS6 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.723e-30
Identity = 79/176 (44.89%), Postives = 101/176 (57.39%), Query Frame = 2
Query:    5 RPGVLSPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 532
            + GV+ P RVRLLL + + C+                 CIVS DLSVL++VIVK+G+ D+ GLT    PR  GPKRA+ IRKLF LSKEDDVR+YV   RR  TTKSGK  +KAPKIQRL+TP  L                      EY +LLA R+ E++  ++E   ++ S L
Sbjct:   64 KQGVMHPTRVRLLLSKDSSCYRSRRAGERKRKSVRG--CIVSSDLSVLSVVIVKQGDADIEGLTTETVPRRLGPKRANNIRKLFALSKEDDVRQYV--IRREVTTKSGKTYTKAPKIQRLITPRRLAHKAQLREKKVKAIQASKDAAAEYAQLLAKRVAEKKSEKAEEKKRRASSL 235          
The following BLAST results are available for this feature:
BLAST of EY755964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6_CHICK2.859e-3550.2940S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]
RS6_ONCMY1.086e-3449.7140S ribosomal protein S6 OS=Oncorhynchus mykiss GN... [more]
RS6_XENLA3.161e-3449.7140S ribosomal protein S6 OS=Xenopus laevis GN=rps6... [more]
RS6_APLCA1.017e-3250.2940S ribosomal protein S6 OS=Aplysia californica GN... [more]
RS6_SPOFR1.124e-3147.1940S ribosomal protein S6 OS=Spodoptera frugiperda ... [more]
RS6_GLOMM3.271e-3148.8540S ribosomal protein S6 OS=Glossina morsitans mor... [more]
RS6_DROME3.271e-3147.7040S ribosomal protein S6 OS=Drosophila melanogaste... [more]
RS6_BRAFL4.272e-3149.1440S ribosomal protein S6 OS=Branchiostoma floridae... [more]
RS6_MANSE9.517e-3146.0740S ribosomal protein S6 OS=Manduca sexta GN=RpS6 ... [more]
RS6_YARLI4.723e-3044.8940S ribosomal protein S6 OS=Yarrowia lipolytica GN... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-A07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755964 ID=EY755964; Name=EY755964; organism=Citrus sinensis; type=EST; length=698bp
CACGCGTCCGGGAGTGCTGTCTCCCGGCCGTGTTCGTCTTCTGCTCCACC
GTGGTACCCCTTGCTTCCGTGGGTATGGCAGGAGAGATGGAGAGCGCAGG
AGGAAGTCTGTTCGTGGATGCATAGTTAGTCCAGATCTCTCCGTGTTGAA
TTTGGTCATTGTGAAAAAGGGAGAACATGACCTTCCTGGACTTACCGATA
CAGAAAAGCCCAGAATGAGAGGTCCCAAGAGAGCATCGAAGATCAGGAAG
TTGTTCAACCTTTCCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTA
TCGTAGGACCTTCACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGA
AAATTCAGAGGTTGGTAACTCCTTTGACTCTGCAAAGGAAGCGTGCAAGA
ATTGCAGAAAAGAAGCAGAGAATTGCCAAGGCCAAGGCTGAAGCAGCGGA
ATACCAGAAGCTCCTTGCTACCAGGTTGAAGGAGCAGCGTGAACGCCGCA
GTGAGAGTTTGGCAAAGAAGAGGTCTAGGCTCTCTGCTGCTTCAAAGCCA
TCTATTGCAGCTTAGATTAGATTCTTTGCTATAGTTGTTCTTTGGTCGGT
TATGTATTGTCCTGCTGAATTCTTTTCTATAGGTTGAGGAAATTTCGAGT
GTTTTTGACTTTATATCCCATGGAATGTGATACAATAACCTTCATGGN
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