EY755959

Overview
NameEY755959
Unique NameEY755959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12024 contig Csv1_Contig12024:80..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY755959 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.205e-14
Identity = 59/213 (27.70%), Postives = 101/213 (47.42%), Query Frame = 3
Query:  117 KTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-IRLMEGDHVGPFNLGNPGEFTMLELAEVVQEI--IDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 740
            K N+ GT  +L   K  G   RF+  ST EVYG+  +      +    + +   + Y   K  AE L M Y R  G+     R  N YGP    +  +++  F+  A+  +PL ++GDG   RS+ +  D+ E   + L +G+    +N+G   E  ++++A  + ++  ID ++ I++  N   +  +   D  K K+ LGW  R    +GL
Sbjct:  105 KNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDASVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE--KLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVNHVYNIGTTRERRVIDVANDISKLFGIDPDSTIQYVENRPFNDQRYFLDDQKLKK-LGWCERTNWEEGL 312          
BLAST of EY755959 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.205e-14
Identity = 61/213 (28.64%), Postives = 100/213 (46.95%), Query Frame = 3
Query:  117 KTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG-PFNLGNPGEFTMLELAEVVQEI--IDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 740
            K N+ GT  +L   K  G   RF+  ST EVYG+  +      +    + +   + Y   K  AE L M Y R  G+     R  N YGP    +  +++  F+  A+R + L ++GDG   RS+ +  D+ E    ++    VG  +N+G   E  + ++A+ + ++  +D  A I+F  N   +  +   D  K K+ LGW  R T  +GL
Sbjct:  105 KNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDALVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE--KLIPKFILLAMRGQVLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHVYNIGTKKERRVNDVAKDICKLFNMDPEANIKFVDNRPFNDQRYFLDDQKLKK-LGWSERTTWEEGL 312          
BLAST of EY755959 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 59/213 (27.70%), Postives = 99/213 (46.48%), Query Frame = 3
Query:  117 KTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-IRLMEGDHVGPFNLGNPGEFTMLELAEVVQEII--DRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 740
            K N+ GT  +L   K  G   RF+  ST EVYG+  +      +    + +   + Y   K  AE L M Y R  G+     R  N YGP    +  +++  F+  A+  +PL ++GDG   RS+ +  D+ E   + L +G+    +N+G   E  ++++A  + ++   D  + I+F  N   +  +   D  K K+ LGW+ R     GL
Sbjct:  107 KNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAAVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE--KMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEIGHVYNVGTKRERRVIDVARDICKLFGKDPESSIQFVENRPFNDQRYFLDDQKLKK-LGWQERTNWEDGL 314          
BLAST of EY755959 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMA (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A GN=rfbB1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.967e-13
Identity = 62/231 (26.84%), Postives = 97/231 (41.99%), Query Frame = 3
Query:  117 KTNVVGTLNMLGLA----------KRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNA------------RIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 740
            +TN+VGT N+L  A          K    RF   ST EVYGD       +  +    P    S Y   K +++ L   + R  G+   +    N YGP    +  +++   +  AL  +PL VYGDG Q R + FV D    L +++    VG  +N+G   E   +E+ + +  +++  A             I F  +      +   D  K ++ LGW+P  T   GL
Sbjct:   99 QTNIVGTFNLLEAARAYRQQMPSEKHEAFRFHHISTDEVYGDL---SGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHARALYQVVTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPGHDARYAVDTAKIRRDLGWQPLETFESGL 324          
BLAST of EY755959 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.793e-13
Identity = 62/230 (26.96%), Postives = 102/230 (44.35%), Query Frame = 3
Query:   99 RAVGVNKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP-FNLGNPGEFTMLELA-EVVQEIIDRNARIEFR---PNTEDDP--HKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFR 764
            RA      NV GT  ++  A      +F+  ST EVYG  L     E+     +P    + Y   K  AE     Y         I R  N YGP    +  +V+  F++         ++G G QTR+F + +D+VE  + +++    G  +N+G   E ++L+LA E++Q I + N+  E        +D P    R P  ++    LGW P+V  ++G+   +  +R
Sbjct:  110 RAFEFTYVNVYGTHVLVSAAHEARVEKFIYVSTDEVYGGSLDKEFDES-----SPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYR 332          
BLAST of EY755959 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.329e-12
Identity = 60/230 (26.09%), Postives = 100/230 (43.48%), Query Frame = 3
Query:   99 RAVGVNKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP-FNLGNPGEFTMLELA-EVVQEIIDRNARIEFR-----PNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFR 764
            RA      NV GT  ++  A      +F+  ST EVYG  L     E+     +P    + Y   K  AE     Y         I R  N YGP    +  +V+  F++         ++G G QTR+F + +D+VE  + +++    G  +N+G   E ++++LA E++Q I + N+  E        N       R P  ++    LGW P+V  ++G+   +  +R
Sbjct:  110 RAFEFTYVNVYGTHVLVSAAHEARVEKFIYVSTDEVYGGSLDKEFDES-----SPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYR 332          
BLAST of EY755959 vs. ExPASy Swiss-Prot
Match: LPSL_RHIME (UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti GN=lspL PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.867e-12
Identity = 64/233 (27.47%), Postives = 103/233 (44.21%), Query Frame = 3
Query:  123 NVVGTLNMLGLAKRVGARFL-LTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL-----MEGDHVGP---------------FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHK--RKPDITKAKQLLGWEPRVTLRKGLPLMV 752
            N+VG+ NML LAK +  + L L STS +YG   + P AE    +  P+   + Y   K++ E +   Y     +     R F  YGP    D    +  FV       P+ +YG+G+ +R F ++ DLVE ++RL      E + V P                N G      ++   E V++ + R A     P  + D  +    PD+ +A  L G++P V++ +G+   V
Sbjct:  103 NLVGSWNMLELAKAIAPKHLMLASTSSIYGANEKIPFAEADRAD-EPM---TLYAATKKSMELMAHSYAHLYKVPTTSFRFFTVYGPWGRPD--MALFKFVDAIHNGRPIDIYGEGRMSRDFTYIDDLVESIVRLSHVPPSEENRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPMQQGDVPRTFASPDLLEA--LTGFKPSVSVEEGVARFV 327          
BLAST of EY755959 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMB (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B GN=rfbB1 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.616e-12
Identity = 61/231 (26.41%), Postives = 96/231 (41.56%), Query Frame = 3
Query:  117 KTNVVGTLNMLGLAKRV----------GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNA------------RIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 740
            +TN+VGT N+L  A+              RF   ST EVYGD       +  +    P    S Y   K +++ L   + R  G+   +    N YGP    +  +++   +  AL  +PL VYGDG Q R + FV D    L +++    VG  +N+G   E   +E+ + +  +++  A             I F  +      +   D  K ++ LGW P  T   GL
Sbjct:   99 QTNIVGTFNLLEAARAYWQQMPSEQHEAFRFHHISTDEVYGDL---GGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHARALYQVVTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPGHDVRYAVDAAKIRRDLGWLPLETFESGL 324          
BLAST of EY755959 vs. ExPASy Swiss-Prot
Match: RFFG_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rffG PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.470e-11
Identity = 60/231 (25.97%), Postives = 97/231 (41.99%), Query Frame = 3
Query:  117 KTNVVGTLNMLGLA----------KRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNA------------RIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 740
            +TN+VGT  +L  A          K+   RF   ST EVYGD       + ++    P    S Y   K +++ L   + R  G+   I    N YGP    +  +++   +  AL  + L VYG+G+Q R + +V D    L  +     VG  +N+G   E   L++ E + E+++  A             I F  +      +   D +K  + LGW P+ T   G+
Sbjct:   99 ETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDL---HSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVADRPGHDLRYAIDASKIARELGWLPQETFESGM 324          
BLAST of EY755959 vs. ExPASy Swiss-Prot
Match: EXOB_RHIME (UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=exoB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.919e-11
Identity = 66/225 (29.33%), Postives = 96/225 (42.67%), Query Frame = 3
Query:  123 NVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETY-WGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRV----------VSNFVAQAL-RKEPLTVYG------DGKQTRSFQFVSDLVEGLIR----LMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTL 728
            NV+GTL +L  A   G   F+ +ST   YG P   P  E++    +NP      Y   K   E    DY    G+ + I R FN  G      +GR+          +   +  AL R+E   V+G      DG   R +  V DL +  +R    L+EG      NLG     T+ EL + ++++  R   I +    E D      +  KA+Q+LGWEP+  L
Sbjct:   95 NVIGTLTLLSAALAAGIDAFVFSSTCATYGLPDSVPMDESHKQAPINP------YGRTKWICEQALKDYGLYKGLRSVILRYFNAAGADF---EGRIGEWHEPETHAIPLAIDAALGRREGFKVFGTDYDTRDGTCVRDYIHVLDLADAHVRAVDYLLEGGESVALNLGTGTGTTVKELLDAIEKVAKRPFNIGYAERREGDSTTLVANNDKARQVLGWEPQYDL 310          
The following BLAST results are available for this feature:
BLAST of EY755959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RHM3_ARATH9.205e-1427.70Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM1_ARATH9.205e-1428.64Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM2_ARATH2.678e-1327.70Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
RFBB_NEIMA5.967e-1326.84dTDP-glucose 4,6-dehydratase OS=Neisseria meningit... [more]
TGDS_BOVIN7.793e-1326.96dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TG... [more]
TGDS_HUMAN1.329e-1226.09dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=... [more]
LPSL_RHIME3.867e-1227.47UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti... [more]
RFBB_NEIMB8.616e-1226.41dTDP-glucose 4,6-dehydratase OS=Neisseria meningit... [more]
RFFG_ECOLI1.470e-1125.97dTDP-glucose 4,6-dehydratase OS=Escherichia coli (... [more]
EXOB_RHIME1.919e-1129.33UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=e... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-001-H11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755959 ID=EY755959; Name=EY755959; organism=Citrus sinensis; type=EST; length=889bp
CCCGCGTCCGAATTAAATTTACTTAATTTGTTTATTATTTTTGTTGAAAC
CTGTTGTTAATTTGTTTGAAGTTTGAATTCCTTTGACTGTTATTTTTGCG
TGCGGTGGGGGTGAACAAGACGAACGTGGTGGGGACACTCAACATGTTAG
GGCTAGCTAAAAGAGTTGGGGCACGGTTCTTGTTAACAAGCACTAGTGAA
GTGTACGGTGACCCGTTACAGCATCCGCAGGCCGAGACCTACTGGGGCAA
TGTCAACCCTATCGGTGTAAGAAGCTGTTATGATGAGGGCAAGCGCACAG
CAGAGACCTTGACCATGGACTATCATCGAGGACTTGGAATTGAGGCGAGG
ATTGCTAGGATTTTTAACACTTATGGACCACGAATGTGCATTGATGATGG
TCGTGTTGTGAGCAACTTTGTCGCCCAAGCGTTGAGGAAGGAGCCATTGA
CTGTTTATGGCGATGGAAAACAGACTAGAAGTTTCCAATTCGTTTCAGAC
CTGGTTGAGGGCCTAATAAGGCTAATGGAGGGCGATCATGTCGGTCCTTT
TAACCTCGGCAATCCTGGTGAATTCACCATGCTTGAACTAGCTGAGGTTG
TCCAAGAGATAATAGACCGAAATGCAAGGATAGAGTTCAGGCCAAACACA
GAGGATGATCCACATAAAAGGAAGCCAGACATTACAAAGGCTAAACAGCT
TCTTGGGTGGGAGCCAAGAGTGACCCTCCGGAAGGGGCTTCCTCTCATGG
TTGCCGACTTCCGGCATCGAATTTTTGGTGACCAAAAGAANCNNTGTGTG
NTGNTGGAAGAAGTGATGCCACTTCTTTCTCGATGTACTCTGCTAACTAA
ATTCCCNATGAGTGNTGGGAAAACTGNAGATATATTAAT
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