EY755920

Overview
NameEY755920
Unique NameEY755920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_MYCPA (DNA gyrase subunit B OS=Mycobacterium paratuberculosis GN=gyrB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.758e-15
Identity = 49/149 (32.89%), Postives = 78/149 (52.35%), Query Frame = 3
Query:   42 EDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYK-DDKGKLVQGCYDDAQLN-----NVHSSFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMGAMADTLKGLI 470
            ++F I  LRYH+I+   DAD  G HI TL+LT  +++   L +   +++  PPLYK   +    +  Y D + +      + +    +  + IQR  GL  M    +W TT++P +R+LRQ+ +DDA     +FS LMG   D  +  I
Sbjct:  517 DEFDITKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIEHGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKDDGIQRYKGLGEMDAKELWETTMDPTVRVLRQVTLDDAAAADELFSILMGEDVDARRSFI 665          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRBS_STRSH (DNA gyrase subunit B, novobiocin-sensitive OS=Streptomyces sphaeroides GN=gyrBS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.428e-14
Identity = 53/148 (35.81%), Postives = 75/148 (50.68%), Query Frame = 3
Query:   42 EDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYK-----DDKGKLVQGCYDDAQLNNVHSSFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMGAMADTLKGLI 470
            EDF I+ LRYH+I+   DAD  G HI TL+LTF +++   L +   +Y+  PPLYK     DD          DA +     +      +SIQR  GL  M    +  TT++   R+L Q+ +DDA Q   +FS LMG   +  +  I
Sbjct:  525 EDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQNGKRIKEDSIQRFKGLGEMNAEELRITTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFI 672          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRBR_STRSH (DNA gyrase subunit B, novobiocin-resistant OS=Streptomyces sphaeroides GN=gyrBR PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.428e-14
Identity = 51/138 (36.96%), Postives = 74/138 (53.62%), Query Frame = 3
Query:   42 EDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDD-KGKLVQGCYDDAQLNNVHSSFPSHAL----NSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMG 440
            EDF I  LRYH+I+   DAD  G HI TL+LTF +++   L ++  +++  PPLYK     + V+  Y D + N +             +SIQR  GL  M    +  TT++P  R+L Q+ +DDA     +FS LMG
Sbjct:  518 EDFDIAKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLVEEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDGRRIRDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMG 655          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: PARE_RICPR (DNA topoisomerase 4 subunit B OS=Rickettsia prowazekii GN=parE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 42/135 (31.11%), Postives = 74/135 (54.81%), Query Frame = 3
Query:   42 EDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYK-DDKGKLVQGCYDDAQLNNVHS-SFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMG 440
            +++  + LRY +I+  TDAD  GAHI +L++TFF+     L ++  +Y+  PPLY+     K+   C ++ ++   +  S  S A   + R  GL  MMP ++  TT++P+ R L ++ ++D      +   LMG
Sbjct:  501 KNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHLYLAKPPLYRLTQSNKIYYACDEEEKIKLTYKLSKASKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTLEDVQNVDKIVDDLMG 635          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: PARE_RICTY (DNA topoisomerase 4 subunit B OS=Rickettsia typhi GN=parE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 42/135 (31.11%), Postives = 73/135 (54.07%), Query Frame = 3
Query:   42 EDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYK-DDKGKLVQGCYDDAQLNNVHS-SFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMG 440
            +++  + LRY +I+  TDAD  GAHI +L++TFF+     L  +  +Y+  PPLY+     K+   C ++ ++   +  S  S A   + R  GL  MMP ++  TT++P+ R L ++ ++D      +   LMG
Sbjct:  502 KNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPQLVKEGHLYLAKPPLYRLTQSNKIYYACDEEEKIKLTYKLSKTSKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTLEDVQNVDKIVDDLMG 636          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: PARE_PSEAE (DNA topoisomerase 4 subunit B OS=Pseudomonas aeruginosa GN=parE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 44/142 (30.99%), Postives = 71/142 (50.00%), Query Frame = 3
Query:   21 PGLGEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHSSFPSHALN---SIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLM 437
            PG  ++ +      LRY +I    DAD  G HI TL+   F ++   L +   +YV +PPLY+ D GK +    D+A+ + +     +        + R  GL  M P+++  TT++P  R L QL ++DAT T  +   L+
Sbjct:  471 PGASDLAQ------LRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPPLYRIDLGKDIYYALDEAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTLEDATGTLEIMDMLL 606          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_CAUCR (DNA gyrase subunit B OS=Caulobacter crescentus GN=gyrB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 3
Query:   24 GLGEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLN 260
            G G   +DF    +RYH+I+  TDAD  GAHI TL+LTFFY+    L +  +IY+  PPLYK  KGK  +   DDA+++
Sbjct:  492 GAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKASKGKSSRYLKDDAEMD 570          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_CAUCN (DNA gyrase subunit B OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=gyrB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 3
Query:   24 GLGEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLN 260
            G G   +DF    +RYH+I+  TDAD  GAHI TL+LTFFY+    L +  +IY+  PPLYK  KGK  +   DDA+++
Sbjct:  492 GAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKASKGKSSRYLKDDAEMD 570          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: PARE_RICBR (DNA topoisomerase 4 subunit B OS=Rickettsia bellii (strain RML369-C) GN=parE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.889e-12
Identity = 42/135 (31.11%), Postives = 72/135 (53.33%), Query Frame = 3
Query:   42 EDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHS--SFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMG 440
            +++  + LRY +I+  TDAD  GAHI +L++TFF+     L +D  +Y+  PPLY+  +        D+ +   +    S  S A   + R  GL  MMP+++  TT++P+ R L ++ ++D      +   LMG
Sbjct:  501 KNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEDGHLYLAKPPLYRLTQSNKTYYANDEEEKAKLTDKLSKSSKAKIEVGRFKGLGEMMPMQLKETTMHPEKRSLLKVTLEDFQNVDKIVDDLMG 635          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_AQUAE (DNA gyrase subunit B OS=Aquifex aeolicus GN=gyrB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.889e-12
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   36 MGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNN 263
            +GED  ++ LRYH+I+  TDAD  G+HI TL+LTFFY++   L ++ ++Y+  PPLY+  KGK      DD +  +
Sbjct:  483 IGEDLDLKKLRYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEEGYVYIAEPPLYRVKKGKKEIYIKDDKEFEH 558          
The following BLAST results are available for this feature:
BLAST of EY755920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GYRB_MYCPA3.758e-1532.89DNA gyrase subunit B OS=Mycobacterium paratubercul... [more]
GYRBS_STRSH1.428e-1435.81DNA gyrase subunit B, novobiocin-sensitive OS=Stre... [more]
GYRBR_STRSH1.428e-1436.96DNA gyrase subunit B, novobiocin-resistant OS=Stre... [more]
PARE_RICPR3.517e-1331.11DNA topoisomerase 4 subunit B OS=Rickettsia prowaz... [more]
PARE_RICTY7.836e-1331.11DNA topoisomerase 4 subunit B OS=Rickettsia typhi ... [more]
PARE_PSEAE1.746e-1230.99DNA topoisomerase 4 subunit B OS=Pseudomonas aerug... [more]
GYRB_CAUCR1.746e-1246.84DNA gyrase subunit B OS=Caulobacter crescentus GN=... [more]
GYRB_CAUCN1.746e-1246.84DNA gyrase subunit B OS=Caulobacter crescentus (st... [more]
PARE_RICBR3.889e-1231.11DNA topoisomerase 4 subunit B OS=Rickettsia bellii... [more]
GYRB_AQUAE3.889e-1243.42DNA gyrase subunit B OS=Aquifex aeolicus GN=gyrB P... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-001-D11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755920 ID=EY755920; Name=EY755920; organism=Citrus sinensis; type=EST; length=892bp
CCCGCGTCCGAATTCGTGTTCCCGGACTTGGAGAAATGGGAGAGGATTTT
ATGATACAGGCTCTGCGATATCATCAGATCCTCACATCAACAGATGCTGA
CGGCTACGGTGCTCACATCCTAACGCTGATGTTGACATTTTTCTACAAAT
ATCAAAACACCTTATTTGATGACTGTTGGATTTATGTCTGCGTTCCACCC
CTCTACAAAGACGACAAGGGAAAGCTGGTACAGGGCTGCTATGATGATGC
ACAGCTGAATAATGTCCATAGCTCCTTCCCTTCACATGCTTTGAATAGCA
TTCAAAGGCTCTCAGGCCTGAGATACATGATGCCTGTGCGGATGTGGTAG
ACAACACTGAACCCTCAGATCCGAATGCTTAGGCAACTGGCGATTGACGA
TGCAACACAAACACATGTTGTGTTCTCCTCCCTCATGGGGGCCATGGCGG
ACACTCTGAAGGGACTCATACAGAATGCTGCAAACCTCCTAAACCTGCAA
CATCTTGAGATCTAAGCCATCACTTAGAATGAGATCGTCATTCTTTGCAT
GTGAAACTCTGGAGAACATTGCTCCTTTATCGGAGAGCACAATGAAGATG
ATTCTATTCTTGAACATAGCTATCTGAACAGCCGTGCTAGTGTTAATACG
CAAGATTTATGTACTTTCTGCACAGTTCTTAGGGCTAGATGGATATTGAC
ATTGCATAGTTGCATATTAAAATTTACTGGCTCTGATGTAACGTGAACAG
TATGTGGATTTATCTCAAACTGATATCCTGAANATTTAATTTCGGAGATG
ACACAAAGATGCCCGACCCTCTGGAGGATCGAGGTAGCATATCTCTGATG
CAAAATATAACCCATCGAATGTGCCCCGCATTCATTCACTGG
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