EY755920

Overview
NameEY755920
Unique NameEY755920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: PARE_ECOLI (DNA topoisomerase 4 subunit B OS=Escherichia coli (strain K12) GN=parE PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 3
Query:   54 IQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHSSFP-SHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDD 401
            +  LRY +I    DAD  G HI TL+   F K+   L     +YV +PPLY+ D GK V     + +   V           ++QR  GL  M P+++  TTL+P  R L QL IDD
Sbjct:  477 LSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_BARBK (DNA gyrase subunit B OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=gyrB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 45/129 (34.88%), Postives = 70/129 (54.26%), Query Frame = 3
Query:   63 LRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNN-VHSSFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAID--DATQTHVVFSSLMG 440
            LRY +I+  TDAD  GAHI +L++TFF++    L     +Y+ VPPLY+  +G  V    DD+  +  + + F       I R  GL  M   ++  TT+NP+ R L +++ID  +  +T     +LMG
Sbjct:  542 LRYERIIIMTDADVDGAHIASLLITFFFQEIPDLIRAGHLYLAVPPLYRISQGGKVAYARDDSHKDELLKTEFTGKGKIEIGRFKGLGEMRAEQLKETTMNPKKRTLLRVSIDTFEMQETKETVQNLMG 670          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: PARE_RICFE (DNA topoisomerase 4 subunit B OS=Rickettsia felis GN=parE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.930e-11
Identity = 41/135 (30.37%), Postives = 71/135 (52.59%), Query Frame = 3
Query:   42 EDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHS--SFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMG 440
            +++  + LRY +I+  TDAD  GAHI +L++TFF+     L ++  +Y+  PPLY+  +        D+ +   +    S  S A   + R  GL  MMP ++  TT++P+ R L ++ ++D      +   LMG
Sbjct:  501 KNYKEENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLSKASKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTLEDFQNVDKIVDDLMG 635          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_PSEPU (DNA gyrase subunit B OS=Pseudomonas putida GN=gyrB PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 3
Query:   24 GLGEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDD 248
            G G   E++ I  LRYH I+  TDAD  G+HI TL+LTFF++    L +  +IY+  PPLYK  KGK  Q   DD
Sbjct:  477 GCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKKGKQEQYIKDD 551          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_PSEAE (DNA gyrase subunit B OS=Pseudomonas aeruginosa GN=gyrB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 3
Query:   24 GLGEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDD 248
            G G   E++ I  LRYH I+  TDAD  G+HI TL+LTFF++    L +  +IY+  PPLYK  +GK  Q   DD
Sbjct:  477 GCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYKVKRGKQEQYIKDD 551          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_VIBPA (DNA gyrase subunit B OS=Vibrio parahaemolyticus GN=gyrB PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 3
Query:   24 GLGEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHSS 275
            G G   +++    LRYH I+  TDAD  G+HI TL+LTFFY+    L +  ++Y+  PPLYK  KGK  Q   D+  +N    S
Sbjct:  476 GCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVS 559          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_VIBCH (DNA gyrase subunit B OS=Vibrio cholerae GN=gyrB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 3
Query:   24 GLGEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLN 260
            G G   +++    LRYH I+  TDAD  G+HI TL+LTFFY+    L +  +IY+  PPLYK  KGK  Q   D+  +N
Sbjct:  476 GCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEAMN 554          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_HELPY (DNA gyrase subunit B OS=Helicobacter pylori GN=gyrB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 3
Query:   42 EDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHSSFPSHALNSI 302
            E F I+ LRYH+I+  TDAD  G+HI TL++TFFY+Y   L +   +Y+   PLYK  KGK      D   L++       H +NS+
Sbjct:  478 ESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYKKGKTEIYLKDSVALDHF---LIEHGINSV 561          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_RICFE (DNA gyrase subunit B OS=Rickettsia felis GN=gyrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 3
Query:   24 GLGEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKG 221
            G G    +F ++ LRYH+++  TDAD  G+HI TL+LTFFY++   L +  ++Y+  PPLYK  KG
Sbjct:  486 GTGVDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIAQPPLYKVKKG 551          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_RICBR (DNA gyrase subunit B OS=Rickettsia bellii (strain RML369-C) GN=gyrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 3
Query:   24 GLGEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKG 221
            G G    +F ++ LRYH+++  TDAD  G+HI TL+LTFFY++   L +  ++Y+  PPLYK  KG
Sbjct:  486 GTGVDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIAQPPLYKVKKG 551          
The following BLAST results are available for this feature:
BLAST of EY755920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PARE_ECOLI1.478e-1136.75DNA topoisomerase 4 subunit B OS=Escherichia coli ... [more]
GYRB_BARBK1.478e-1134.88DNA gyrase subunit B OS=Bartonella bacilliformis (... [more]
PARE_RICFE1.930e-1130.37DNA topoisomerase 4 subunit B OS=Rickettsia felis ... [more]
GYRB_PSEPU3.292e-1148.00DNA gyrase subunit B OS=Pseudomonas putida GN=gyrB... [more]
GYRB_PSEAE3.292e-1146.67DNA gyrase subunit B OS=Pseudomonas aeruginosa GN=... [more]
GYRB_VIBPA4.300e-1141.67DNA gyrase subunit B OS=Vibrio parahaemolyticus GN... [more]
GYRB_VIBCH4.300e-1144.30DNA gyrase subunit B OS=Vibrio cholerae GN=gyrB PE... [more]
GYRB_HELPY4.300e-1141.38DNA gyrase subunit B OS=Helicobacter pylori GN=gyr... [more]
GYRB_RICFE5.616e-1145.45DNA gyrase subunit B OS=Rickettsia felis GN=gyrB P... [more]
GYRB_RICBR5.616e-1145.45DNA gyrase subunit B OS=Rickettsia bellii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-001-D11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755920 ID=EY755920; Name=EY755920; organism=Citrus sinensis; type=EST; length=892bp
CCCGCGTCCGAATTCGTGTTCCCGGACTTGGAGAAATGGGAGAGGATTTT
ATGATACAGGCTCTGCGATATCATCAGATCCTCACATCAACAGATGCTGA
CGGCTACGGTGCTCACATCCTAACGCTGATGTTGACATTTTTCTACAAAT
ATCAAAACACCTTATTTGATGACTGTTGGATTTATGTCTGCGTTCCACCC
CTCTACAAAGACGACAAGGGAAAGCTGGTACAGGGCTGCTATGATGATGC
ACAGCTGAATAATGTCCATAGCTCCTTCCCTTCACATGCTTTGAATAGCA
TTCAAAGGCTCTCAGGCCTGAGATACATGATGCCTGTGCGGATGTGGTAG
ACAACACTGAACCCTCAGATCCGAATGCTTAGGCAACTGGCGATTGACGA
TGCAACACAAACACATGTTGTGTTCTCCTCCCTCATGGGGGCCATGGCGG
ACACTCTGAAGGGACTCATACAGAATGCTGCAAACCTCCTAAACCTGCAA
CATCTTGAGATCTAAGCCATCACTTAGAATGAGATCGTCATTCTTTGCAT
GTGAAACTCTGGAGAACATTGCTCCTTTATCGGAGAGCACAATGAAGATG
ATTCTATTCTTGAACATAGCTATCTGAACAGCCGTGCTAGTGTTAATACG
CAAGATTTATGTACTTTCTGCACAGTTCTTAGGGCTAGATGGATATTGAC
ATTGCATAGTTGCATATTAAAATTTACTGGCTCTGATGTAACGTGAACAG
TATGTGGATTTATCTCAAACTGATATCCTGAANATTTAATTTCGGAGATG
ACACAAAGATGCCCGACCCTCTGGAGGATCGAGGTAGCATATCTCTGATG
CAAAATATAACCCATCGAATGTGCCCCGCATTCATTCACTGG
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