EY730689

Overview
NameEY730689
Unique NameEY730689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY730689 vs. ExPASy Swiss-Prot
Match: NDOB_PSEPU (Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=ndoB PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.695e-28
Identity = 70/199 (35.18%), Postives = 101/199 (50.75%), Query Frame = -3
Query:   58 IFTDPDLFALEMKHIFEGGWVYLAHESQVPEINDYFTTWIGRQPVVITRDKKGTLHGLVNACAHRGAMLCRRKQGNKGSFTCPFHGWTFSNAGKLLKVKDAKTGAYPDSFD--CDGSHDLKRLGRFENYRGFLFGSLSETVPELSDYLGETRVIIDQMVDQAPLGLEVLRGSSSYVYDGNWKLQIEN-GADGYHVSSVH 645
            I  D +LF  E+K IF   W++L H+S +P   DY T  +G   V+++R   G++   +N C HRG  L   + GN   F C +HGW F + G+L  V   K   Y +S +  C G   LK + R E++ GF++G   +  P L DYLG+    ++ M   +  GLE++      V   NWK   EN   D YHV   H
Sbjct:   20 IHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEK-DLYGESLNKKCLG---LKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSG-GLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTH 213          
BLAST of EY730689 vs. ExPASy Swiss-Prot
Match: NDOB_PSEFL (Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas fluorescens GN=ndoB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.980e-27
Identity = 67/199 (33.67%), Postives = 100/199 (50.25%), Query Frame = -3
Query:   58 IFTDPDLFALEMKHIFEGGWVYLAHESQVPEINDYFTTWIGRQPVVITRDKKGTLHGLVNACAHRGAMLCRRKQGNKGSFTCPFHGWTFSNAGKLLKVKDAKTGAYPDSFD--CDGSHDLKRLGRFENYRGFLFGSLSETVPELSDYLGETRVIIDQMVDQAPLGLEVLRGSSSYVYDGNWKLQIEN-GADGYHVSSVH 645
            I  D +LF  E++ I    W++L H+S +P   DY T  +G   V+++R   G++   +N C HRG  L   + GN   F C +HGW F + G+L  V   K   Y +S +  C G   LK + R E++ GF++G   +  P L DYLG+    ++ +   +  GLE++      V   NWK   EN   D YHV   H
Sbjct:   20 IHGDEELFQHELRTIXARNWLFLTHDSLIPSPGDYVTAKMGIDEVIVSRQSDGSIRAFLNVCRHRGKTLVNAEAGNAKGFVCSYHGWGFGSNGELQSVPFEKE-LYGESLNKKCLG---LKEVARVESFHGFIYGCFDQEAPSLMDYLGDAAWYLEPIFKHSG-GLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTH 213          
BLAST of EY730689 vs. ExPASy Swiss-Prot
Match: CHMO_ARATH (Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.313e-18
Identity = 61/205 (29.76%), Postives = 95/205 (46.34%), Query Frame = -3
Query:   58 FTDPDLFALEMKHIFEGGWVYLAHESQVPEINDYFTTWIGRQPVVITRDKKGTLHGLVNACAHRGAMLCRRKQGNKGSFTCPFHGWTFSNAGKLLKVKD---------AKTGAYPDSFDCDGSHDLKRLGRFENYRGFLFGSLSETVPELSDYLGETRVIIDQMVDQAPLGLEVLRGSSSYVYDGNWKLQIENGAD-GYHVSSVH 642
            +TDP  ++ E+  +F GGW  + +  Q+ E  D+FT  +G    V+ RD+ G +H   N C+H  ++L     G K  F C +HGWT+S +G L+K            ++ G  P      G   L ++    + +G +     E V   S++LG +   + Q    +PL     R    Y  D NWK+  +N  D GYHV   H
Sbjct:   78 YTDPQFYSFELDRVFYGGWQAVGYSDQIKESRDFFTGRLGDVDFVVCRDENGKIHAFHNVCSHHASILA-SGNGRKSCFVCLYHGWTYSLSGSLVKATRMSGIQNFSLSEMGLKPLRVAVWGPFVLLKVTAATSRKGEV--ETDELV--ASEWLGTSVGRLSQGGVDSPLSYICRR---EYTIDCNWKVFCDNYLDGGYHVPYAH 274          
BLAST of EY730689 vs. ExPASy Swiss-Prot
Match: CHMO_AMATR (Choline monooxygenase, chloroplastic OS=Amaranthus tricolor GN=CMO PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.313e-18
Identity = 60/217 (27.65%), Postives = 97/217 (44.70%), Query Frame = -3
Query:   13 FTDPDLFALEMKHIFEGGWVYLAHESQVPEINDYFTTWIGRQPVVITRDKKGTLHGLVNACAHRGAMLCRRKQGNKGSFTCPFHGWTFSNAGKLLKVKDAKTGAYPDSFDCDGSHDLKRLG----RFENYRGFLFGSLSETVPELSDYLGETRV--IIDQMVDQAPLGLEVLRGSSSYVYDGNWKLQIENGAD-GYHVSSVHWNYSATMGRRNYEAE 642
            +TDP L++ E+  IF  GW    +  Q+ E N YFT  +G    ++ RD +G +H   N C HR ++L     G K  F CP+HGW F   G L+K    +   +          D K LG    +   +  F+  SL  +  E ++ +G+  +    +++   A          S +  + NWK+  +N  D  YHV   H  Y+A +    Y+ +
Sbjct:  105 YTDPSLYSHELDRIFSKGWQVAGYSDQIKEPNQYFTGSLGNVEYLVCRDGQGKVHAFHNVCTHRASILA-CGTGKKSCFVCPYHGWVFGLDGSLMKATKTENQVF----------DPKELGLVTLKVAIWGPFVLISLDRSGSEGTEDVGKEWIGSCAEEVKKHAFDPSLQFINRSEFPMESNWKVFCDNYLDSAYHVPYAHKYYAAELDFDTYKTD 310          
BLAST of EY730689 vs. ExPASy Swiss-Prot
Match: YEAW_ECOLI (Putative dioxygenase subunit alpha yeaW OS=Escherichia coli (strain K12) GN=yeaW PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.228e-17
Identity = 55/200 (27.50%), Postives = 90/200 (45.00%), Query Frame = -3
Query:   46 FTDPDLFALEMKHIFEGGWVYLAHESQVPEINDYFTTWIGRQPVVITRDKKGTLHGLVNACAHRGAMLCRRKQGNKGSFTCPFHGWTFSNAGKLLKVKDAKTGAYPDSFDCDGSHDLKRLGRFENYRGFLFGSLSETVPELSDYL-GETRVIIDQMVDQAPLGLEVLRGSSSYVYDGNWKLQIENGADGYHVSSVHWNYS 642
            +TD + F  E +++F   W+ +AH S++   NDY T  I  + +V+ R +   L    N C HRG  L   +   K   TCP+H W F   G L   ++ +  A   +FD D +  +    R E Y GF+F ++      + D L G    +++   +   L L     + +     NWK  ++N  + YH    H  +S
Sbjct:   29 YTDQNAFEHEKENVFAKSWICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDGNLAHARNCENVA---NFDSDKAQLVP--VRLEEYAGFVFINMDPNATSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRT---PANWKNIVDNYLECYHCGPAHPGFS 220          
BLAST of EY730689 vs. ExPASy Swiss-Prot
Match: YEAW_ECO57 (Putative dioxygenase subunit alpha yeaW OS=Escherichia coli O157:H7 GN=yeaW PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.228e-17
Identity = 55/200 (27.50%), Postives = 90/200 (45.00%), Query Frame = -3
Query:   46 FTDPDLFALEMKHIFEGGWVYLAHESQVPEINDYFTTWIGRQPVVITRDKKGTLHGLVNACAHRGAMLCRRKQGNKGSFTCPFHGWTFSNAGKLLKVKDAKTGAYPDSFDCDGSHDLKRLGRFENYRGFLFGSLSETVPELSDYL-GETRVIIDQMVDQAPLGLEVLRGSSSYVYDGNWKLQIENGADGYHVSSVHWNYS 642
            +TD + F  E +++F   W+ +AH S++   NDY T  I  + +V+ R +   L    N C HRG  L   +   K   TCP+H W F   G L   ++ +  A   +FD D +  +    R E Y GF+F ++      + D L G    +++   +   L L     + +     NWK  ++N  + YH    H  +S
Sbjct:   29 YTDQNAFEHEKENVFAKSWICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDGNLAHARNCENVA---NFDSDKAQLVP--VRLEEYAGFVFINMDPNATSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRT---PANWKNIVDNYLECYHCGPAHPGFS 220          
BLAST of EY730689 vs. ExPASy Swiss-Prot
Match: CHMO_SPIOL (Choline monooxygenase, chloroplastic OS=Spinacia oleracea GN=CMO PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.228e-17
Identity = 61/219 (27.85%), Postives = 97/219 (44.29%), Query Frame = -3
Query:   13 FTDPDLFALEMKHIFEGGWVYLAHESQVPEINDYFTTWIGRQPVVITRDKKGTLHGLVNACAHRGAMLCRRKQGNKGSFTCPFHGWTFSNAGKLLKVKDAKTGAYPDSFDCDGSHDLKRLG----RFENYRGFLFGSLSETVPELSD----YLGETRVIIDQMVDQAPLGLEVLRGSSSYVYDGNWKLQIENGAD-GYHVSSVHWNYSATMGRRNYEAE 642
            +T+P  ++ E++ IF  GW       Q+ E N YFT  +G    +++RD +G +H   N C HR ++L     G K  F CP+HGW +   G L K   AK          + + D K LG    +   +  F+  SL  ++ E  D    +LG +    D         L+ +   S +  + NWK+  +N  D  YHV   H  Y+  +    Y+ +
Sbjct:  102 YTEPAFYSHELERIFYKGWQVAGISDQIKEPNQYFTGSLGNVEYLVSRDGEGKVHAFHNVCTHRASILA-CGSGKKSCFVCPYHGWVYGMDGSLAKASKAKP---------EQNLDPKELGLVPLKVAVWGPFVLISLDRSLEEGGDVGTEWLGTSAE--DVKAHAFDPSLQFIH-RSEFPMESNWKIFSDNYLDSSYHVPYAHKYYATELNFDTYDTQ 307          
BLAST of EY730689 vs. ExPASy Swiss-Prot
Match: CHMO_BETVU (Choline monooxygenase, chloroplastic OS=Beta vulgaris GN=CMO PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.062e-16
Identity = 61/219 (27.85%), Postives = 95/219 (43.38%), Query Frame = -3
Query:   13 FTDPDLFALEMKHIFEGGWVYLAHESQVPEINDYFTTWIGRQPVVITRDKKGTLHGLVNACAHRGAMLCRRKQGNKGSFTCPFHGWTFSNAGKLLKVKDAKTGAYPDSFDCDGSHDLKRLG----RFENYRGFLFGSLSETVPELSD----YLGETRVIIDQMVDQAPLGLEVLRGSSSYVYDGNWKLQIENGAD-GYHVSSVHWNYSATMGRRNYEAE 642
            +T+P  ++ E++ IF  GW    +  QV E N YFT  +G    +++RD +G LH   N C HR ++L     G K  F CP+HGW +   G L K   A             + D K LG    +   +  F+  SL  ++   +D    ++G++   +        L        S +  + NWK+  +N  D  YHV   H  Y+A +    Y  E
Sbjct:  109 YTEPAFYSHELERIFYKGWQVAGYSEQVKEKNQYFTGSLGNVEYLVSRDGQGELHAFHNVCTHRASILA-CGSGKKSCFVCPYHGWVYGLDGSLAKASKATE---------TQNLDPKELGLAPLKVAEWGPFILISLDRSLDANADVGTEWIGKSAEDVKAHAFDPNL---KFTHRSEFPMECNWKVFCDNYLDSSYHVPYAHKYYAAELDFDTYNTE 314          
BLAST of EY730689 vs. ExPASy Swiss-Prot
Match: CHMO_ATRHO (Choline monooxygenase, chloroplastic OS=Atriplex hortensis GN=CMO PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.062e-16
Identity = 63/217 (29.03%), Postives = 94/217 (43.32%), Query Frame = -3
Query:   13 FTDPDLFALEMKHIFEGGWVYLAHESQVPEINDYFTTWIGRQPVVITRDKKGTLHGLVNACAHRGAMLCRRKQGNKGSFTCPFHGWTFSNAGKLLKVKDA--KTGAYPDSFDCDGSHDLKRLGRFENYRGFLFGSLSETVPEL----SDYLGETRVIIDQMVDQAPLGLEVLRGSSSYVYDGNWKLQIENGAD-GYHVSSVHWNYSATMGRRNYEAE 642
            +T+P  +A E+  IF  GW    +  QV E N YFT  +G    ++ RD +G +H   N C HR ++L     G K  F CP+HGW +   G L K   A  +    PD     G   LK       +  F+  SL  +  E+    S++LG      D         L+ +   S +  + NWK+  +N  D  YHV   H  Y+  +    Y+ +
Sbjct:  103 YTEPAFYAHELDRIFYKGWQVAGYSDQVKEANQYFTGTLGNVEYLVCRDGEGKVHAFHNVCTHRASILA-CGSGKKSCFVCPYHGWVYGMNGSLTKASKATPEQSLNPDEL---GLVPLK----VAVWGPFILISLDRSSREVGDVGSEWLGSCAE--DVKAHAFDPNLQFI-NRSEFPIESNWKIFSDNYLDSSYHVPYAHKYYATELDFDTYQTD 308          
The following BLAST results are available for this feature:
BLAST of EY730689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
NDOB_PSEPU2.695e-2835.18Naphthalene 1,2-dioxygenase subunit alpha OS=Pseud... [more]
NDOB_PSEFL2.980e-2733.67Naphthalene 1,2-dioxygenase subunit alpha OS=Pseud... [more]
CHMO_ARATH4.313e-1829.76Choline monooxygenase, chloroplastic OS=Arabidopsi... [more]
CHMO_AMATR4.313e-1827.65Choline monooxygenase, chloroplastic OS=Amaranthus... [more]
YEAW_ECOLI6.228e-1727.50Putative dioxygenase subunit alpha yeaW OS=Escheri... [more]
YEAW_ECO576.228e-1727.50Putative dioxygenase subunit alpha yeaW OS=Escheri... [more]
CHMO_SPIOL6.228e-1727.85Choline monooxygenase, chloroplastic OS=Spinacia o... [more]
CHMO_BETVU1.062e-1627.85Choline monooxygenase, chloroplastic OS=Beta vulga... [more]
CHMO_ATRHO1.062e-1629.03Choline monooxygenase, chloroplastic OS=Atriplex h... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-033-D03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY730689 ID=EY730689; Name=EY730689; organism=Citrus sinensis; type=EST; length=836bp
AGTGCGCGTGCCTTCGGCTTCGTAATTGCGCCGGCCCATGGTCGCCGAGT
AATTCCAGTGCACGGAACTGACGTGATAACCGTCGGCGCCGTTCTCGATC
TGCAGCTTCCAGTTGCCGTCATACACATACGACGAACTGCCCCGCAGCAC
TTCCAGGCCCAGCGGTGCCTGGTCCACCATCTGGTCGATGATCACCCGGG
TTTCCCCCAGGTAGTCGCTGAGTTCCGGCACCGTCTCGCTGAGGCTACCG
AACAGGAAACCGCGATAGTTTTCGAAGCGGCCAAGGCGCTTGAGGTCGTG
GGAGCCGTCACAGTCGAAGCTGTCGGGATAGGCGCCGGTCTTGGCGTCCT
TCACTTTGAGCAGCTTGCCGGCGTTGCTGAAGGTCCAGCCGTGGAACGGG
CAGGTAAATGAGCCTTTGTTGCCTTGTTTACGGCGGCAGAGCATGGCGCC
ACGGTGGGCGCAGGCGTTGACCAGGCCGTGCAGCGTACCTTTCTTGTCGC
GAGTGATGACCACGGGTTGGCGGCCGATCCAGGTGGTGAAGTAGTCGTTG
ATCTCTGGCACCTGGCTTTCGTGTGCCAGGTAGACCCAACCGCCTTCGAA
AATGTGCTTCATTTCCAGGGCAAACAGGTCGGGGTCGGTGAAAATGTCGC
GGCGGCAGCGGAACACCCGGTGGCGGGATCTTCTGGACGGAGTCGCGCAA
TGTCGGGCGAGTCGGTCGAATGTGCTGATCATGGGGTAGGGCCTCGGTTG
TTCTTGTATCAGGCGCCCCCCCTTATGTGCTTGCCCTACCCCTCCATTCC
GCTGACTGCAATTCGGTATCCACCTGGCGCAACCCG
back to top