GE213268

Overview
NameGE213268
Unique NameGE213268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_BACST (Pyruvate kinase OS=Bacillus stearothermophilus GN=pyk PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.123e-24
Identity = 57/119 (47.90%), Postives = 82/119 (68.91%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI +G+DFIA SFV+ A  +  ++  + A      I +IAKIE+ + + N++EI+ A+DG MVARGDLG +IP E+VP  Q+ +++ C  L KPVI A+Q+L+SM
Sbjct:  168 LPGITEKDRADILFGIRQGIDFIAASFVRRASDVLEIRELLEAHDA-LHIQIIAKIENEEGVANIDEILEAADGLMVARGDLGVEIPAEEVPLIQKLLIKKCNMLGKPVITATQMLDSM 285          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_METEA (Pyruvate kinase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=pyk PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.772e-24
Identity = 58/120 (48.33%), Postives = 83/120 (69.17%), Query Frame = -3
Query:   30 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 389
            +P ++ KD  D++ G+  G D+IA+SFV+  E +  +K   A R+      V+AKIE   +L  L+EII  SDG MVARGDLG ++PLEQVP  Q++I ++ R+L KPV+VA+Q+LESMI
Sbjct:  168 VPAMTEKDRGDLEAGLAAGADWIAVSFVQRPEDVAEVKKVAAGRA-----LVMAKIEKPQALTRLDEIIEISDGIMVARGDLGVEMPLEQVPGVQKRITRVARRLGKPVVVATQMLESMI 282          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_MYCTU (Pyruvate kinase OS=Mycobacterium tuberculosis GN=pyk PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.621e-24
Identity = 58/127 (45.67%), Postives = 85/127 (66.93%), Query Frame = -3
Query:   27 NAMLPTISPKDWLDIDFGITEGVDFIAISFVKS---AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 398
            N   P +S KD  D+ F +  GVD +A+SFV+S    E+++ +   I  R     + VIAK+E  +++ NLE I+LA D  MVARGDLG ++PLE+VP  Q++ +Q+ R+  KPVIVA+Q+L+SMIE
Sbjct:  163 NVTAPALSEKDIEDLTFALNLGVDMVALSFVRSPADVELVHEVMDRIGRR-----VPVIAKLEKPEAIDNLEAIVLAFDAVMVARGDLGVELPLEEVPLVQKRAIQMARENAKPVIVATQMLDSMIE 284          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_LEIME (Pyruvate kinase OS=Leishmania mexicana GN=PYK PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.729e-24
Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD +D+ FG+ +GVD I  SF++SAE +  ++  +  + RD  I +I KIE+   ++N++ II  SDG MVARGDLG +IP E+V  AQ+ ++  C    KPVI A+Q+LESM
Sbjct:  187 LPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRD--IMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESM 303          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK2_TRYBB (Pyruvate kinase 2 OS=Trypanosoma brucei brucei GN=PYK2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.176e-24
Identity = 54/119 (45.38%), Postives = 83/119 (69.75%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D++FG+ +GVD I  SF+++AE +  +++ +  + +D  I +I+KIE+   ++N++ II AS+G MVARGDLG +IP E+V  AQ  I+  C  + KPVI A+Q+LESM
Sbjct:  187 LPAVSEKDRKDLEFGVAQGVDMIFASFIRTAEQVREVRAALGEKGKD--ILIISKIENHQGVQNIDSIIEASNGIMVARGDLGVEIPAEKVCVAQMCIISKCNVVGKPVICATQMLESM 303          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK1_TRYBB (Pyruvate kinase 1 OS=Trypanosoma brucei brucei GN=PYK1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.176e-24
Identity = 54/119 (45.38%), Postives = 83/119 (69.75%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D++FG+ +GVD I  SF+++AE +  +++ +  + +D  I +I+KIE+   ++N++ II AS+G MVARGDLG +IP E+V  AQ  I+  C  + KPVI A+Q+LESM
Sbjct:  187 LPAVSEKDRKDLEFGVAQGVDMIFASFIRTAEQVREVRAALGEKGKD--ILIISKIENHQGVQNIDSIIEASNGIMVARGDLGVEIPAEKVCVAQMCIISKCNVVGKPVICATQMLESM 303          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_MYCIT (Pyruvate kinase OS=Mycobacterium intracellulare GN=pyk PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.054e-23
Identity = 57/127 (44.88%), Postives = 85/127 (66.93%), Query Frame = -3
Query:   27 NAMLPTISPKDWLDIDFGITEGVDFIAISFVKS---AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 398
            N   P +S KD  D+ F +  GVD +A+SFV+S    E+++ +   +  R     + VIAK+E  +++ NLE I+LA D  MVARGDLG ++PLE+VP  Q++ +Q+ R+  KPVIVA+Q+L+SMIE
Sbjct:  163 NVSAPALSEKDIEDLTFALDLGVDLVALSFVRSPADVELVHEVMDRVGRR-----VPVIAKLEKPEAVDNLETIVLAFDAIMVARGDLGVELPLEEVPLVQKRAIQMARENAKPVIVATQMLDSMIE 284          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_CORGL (Pyruvate kinase OS=Corynebacterium glutamicum GN=pyk PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.376e-23
Identity = 58/124 (46.77%), Postives = 86/124 (69.35%), Query Frame = -3
Query:   27 LPTISPKDWLDIDFGITEGVDFIAISFVKS---AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            +P +S KD  D+ F +  GVDFIA+SFV+S   AE+++ +      R     + VIAK+E  +++ +LE I+LA D  MVARGDLG ++PLE+VP  Q++ +Q+ R+  KPVIVA+Q+L+SMIE
Sbjct:  166 VPALSEKDIRDLRFALKLGVDFIALSFVRSPADAELVHKIMDEEGRR-----VPVIAKLEKPEAVTSLEPIVLAFDAVMVARGDLGVEVPLEEVPLVQKRAIQIARENAKPVIVATQMLDSMIE 284          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_BACLI (Pyruvate kinase OS=Bacillus licheniformis GN=pyk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.797e-23
Identity = 55/119 (46.22%), Postives = 81/119 (68.07%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI +GVDFIA SFV+    +  ++  +   +  +DI +I KIE+ + + N++ I+  SDG MVARGDLG +IP E+VP  Q+++++ C  L KPVI A+Q+L+SM
Sbjct:  167 LPGITEKDANDIVFGIEQGVDFIAASFVRRPSDVLEIRELLEEHNA-ADIQIIPKIENQEGVDNIDAILEVSDGLMVARGDLGVEIPAEEVPLVQKELIKKCNALGKPVITATQMLDSM 284          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_STAAR (Pyruvate kinase OS=Staphylococcus aureus (strain MRSA252) GN=pyk PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.347e-23
Identity = 55/119 (46.22%), Postives = 81/119 (68.07%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI E VDFIA SFV+    +  ++  +    + ++I+V  KIE+ + + N+EEI+  SDG MVARGD+G +IP E+VP  Q+ +++ C +L KPVI A+Q+L+SM
Sbjct:  167 LPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREIL--EEQKANISVFPKIENQEGIDNIEEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSM 283          
The following BLAST results are available for this feature:
BLAST of GE213268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
KPYK_BACST2.123e-2447.90Pyruvate kinase OS=Bacillus stearothermophilus GN=... [more]
KPYK_METEA2.772e-2448.33Pyruvate kinase OS=Methylobacterium extorquens (st... [more]
KPYK_MYCTU3.621e-2445.67Pyruvate kinase OS=Mycobacterium tuberculosis GN=p... [more]
KPYK_LEIME4.729e-2446.22Pyruvate kinase OS=Leishmania mexicana GN=PYK PE=1... [more]
KPYK2_TRYBB6.176e-2445.38Pyruvate kinase 2 OS=Trypanosoma brucei brucei GN=... [more]
KPYK1_TRYBB6.176e-2445.38Pyruvate kinase 1 OS=Trypanosoma brucei brucei GN=... [more]
KPYK_MYCIT1.054e-2344.88Pyruvate kinase OS=Mycobacterium intracellulare GN... [more]
KPYK_CORGL1.376e-2346.77Pyruvate kinase OS=Corynebacterium glutamicum GN=p... [more]
KPYK_BACLI1.797e-2346.22Pyruvate kinase OS=Bacillus licheniformis GN=pyk P... [more]
KPYK_STAAR2.347e-2346.22Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]

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Properties
Property NameValue
Genbank description119 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213268 ID=GE213268; Name=GE213268; organism=Citrus sinensis; type=EST; length=430bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTCAATCATAGATTCAAGCAACTG
GGAGGCAACAATAACTGGCTTATTCAGCTGCCTGCAAAGCTGAACAATCT
TTTGCTGGGCTGACGGCACCTGCTCCAATGGTATCTGAGCACCCAAATCT
CCTCTGGCAACCATAGCTCCATCTGATGCTAGAATGATCTCTTCCAAGTT
CTTTAAAGAGTCGATACTCTCAATCTTTGCAATGACAGCAATATCACTAT
CACGAGATCGTGCAGCAATATAGCTCTTCAGGTGATTAATTACTTCAGCA
GACTTGACAAATGAAATGGCTATAAAATCAACACCTTCAGTAATTCCAAA
ATCGATGTCCAGCCAATCCTTAGGAGAAATTGTTGGGAGCATAGCATTAC
GCTCTCGTACCTCGGCCGCGACCACGCTAA
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