GE213268

Overview
NameGE213268
Unique NameGE213268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_COREF (Pyruvate kinase OS=Corynebacterium efficiens GN=pyk PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.065e-23
Identity = 56/121 (46.28%), Postives = 83/121 (68.60%), Query Frame = -3
Query:   27 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            +P +S KD  D+ F +  GVDFIA+SFV+S   +  + + +    R   + VIAK+E  +++  LE I+LA D  MVARGDLG ++PLE+VP  Q++ +Q+ R+  KPVIVA+Q+L+SMIE
Sbjct:  166 VPALSEKDIKDLRFALKLGVDFIALSFVRSPADVELVHAIMDEEGRR--VPVIAKLEKPEAVAALESIVLAFDAIMVARGDLGVEVPLEEVPLVQKRAIQIARENAKPVIVATQMLDSMIE 284          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_BACSU (Pyruvate kinase OS=Bacillus subtilis GN=pyk PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.065e-23
Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI +GVDFIA SF++ +  +  ++  +   +   DI +I KIE+ + + N++ I+  SDG MVARGDLG +IP E+VP  Q+++++ C  L KPVI A+Q+L+SM
Sbjct:  167 LPGITEKDARDIVFGIEQGVDFIAPSFIRRSTDVLEIRELLEEHNAQ-DIQIIPKIENQEGVDNIDAILEVSDGLMVARGDLGVEIPAEEVPLVQKELIKKCNALGKPVITATQMLDSM 284          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_STAES (Pyruvate kinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pyk PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.918e-23
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI E VDFIA SFV+    +  ++  +      ++I +  KIE+ + + N+EEI+  SDG MVARGD+G +IP E VP  Q+ +++ C +L KPVI A+Q+L+SM
Sbjct:  167 LPGITDKDADDIRFGIKENVDFIAASFVRRPSDVLDIRQIL--EEEKAEITIFPKIENQEGIDNIEEILEVSDGLMVARGDMGVEIPPESVPMVQKDLIRKCNKLGKPVITATQMLDSM 283          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_STAEQ (Pyruvate kinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pyk PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.918e-23
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI E VDFIA SFV+    +  ++  +      ++I +  KIE+ + + N+EEI+  SDG MVARGD+G +IP E VP  Q+ +++ C +L KPVI A+Q+L+SM
Sbjct:  167 LPGITDKDADDIRFGIKENVDFIAASFVRRPSDVLDIRQIL--EEEKAEITIFPKIENQEGIDNIEEILEVSDGLMVARGDMGVEIPPESVPMVQKDLIRKCNKLGKPVITATQMLDSM 283          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_THEMA (Pyruvate kinase OS=Thermotoga maritima GN=pyk PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.165e-22
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = -3
Query:   27 TISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 383
            +I+ +D   I  G    V+F A+SFV+  E +  LK+    R    +I VI+KIE+  +L+ LEEII  SDG MVARGDLG +IP+E+VP  Q++I++L +  +KPVIVA+Q+LESMIE
Sbjct:  167 SITDRDREFIKLGTLHDVEFFALSFVRKPEDV--LKAKEEIRKHGKEIPVISKIETKKALERLEEIIKVSDGIMVARGDLGVEIPIEEVPIVQKEIIKLSKYYSKPVIVATQILESMIE 283          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_STAHJ (Pyruvate kinase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=pyk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.165e-22
Identity = 55/119 (46.22%), Postives = 79/119 (66.39%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI E VD+IA SFV+    +  ++  I  R  + +I +  KIE+ + + N+EEI+  SDG MVARGD+G +IP E VP  Q+ +++ C +L KPVI A+Q+L+SM
Sbjct:  167 LPGITDKDADDILFGIKEDVDYIAASFVRRPSDVLDIRE-ILERENNHNITIFPKIENQEGIDNIEEILEVSDGLMVARGDMGVEIPPESVPIVQKDLIRKCNKLGKPVITATQMLDSM 284          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_STAAW (Pyruvate kinase OS=Staphylococcus aureus (strain MW2) GN=pyk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.165e-22
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI E VDFIA SFV+    +  ++  +    + ++I+V  KIE+ + + N+ EI+  SDG MVARGD+G +IP E+VP  Q+ +++ C +L KPVI A+Q+L+SM
Sbjct:  167 LPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREIL--EEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSM 283          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_STAAS (Pyruvate kinase OS=Staphylococcus aureus (strain MSSA476) GN=pyk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.165e-22
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI E VDFIA SFV+    +  ++  +    + ++I+V  KIE+ + + N+ EI+  SDG MVARGD+G +IP E+VP  Q+ +++ C +L KPVI A+Q+L+SM
Sbjct:  167 LPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREIL--EEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSM 283          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_STAAN (Pyruvate kinase OS=Staphylococcus aureus (strain N315) GN=pyk PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.165e-22
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI E VDFIA SFV+    +  ++  +    + ++I+V  KIE+ + + N+ EI+  SDG MVARGD+G +IP E+VP  Q+ +++ C +L KPVI A+Q+L+SM
Sbjct:  167 LPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREIL--EEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSM 283          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_STAAM (Pyruvate kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pyk PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.165e-22
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI E VDFIA SFV+    +  ++  +    + ++I+V  KIE+ + + N+ EI+  SDG MVARGD+G +IP E+VP  Q+ +++ C +L KPVI A+Q+L+SM
Sbjct:  167 LPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREIL--EEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSM 283          
The following BLAST results are available for this feature:
BLAST of GE213268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
KPYK_COREF3.065e-2346.28Pyruvate kinase OS=Corynebacterium efficiens GN=py... [more]
KPYK_BACSU3.065e-2345.38Pyruvate kinase OS=Bacillus subtilis GN=pyk PE=1 S... [more]
KPYK_STAES8.918e-2345.38Pyruvate kinase OS=Staphylococcus epidermidis (str... [more]
KPYK_STAEQ8.918e-2345.38Pyruvate kinase OS=Staphylococcus epidermidis (str... [more]
KPYK_THEMA1.165e-2248.74Pyruvate kinase OS=Thermotoga maritima GN=pyk PE=1... [more]
KPYK_STAHJ1.165e-2246.22Pyruvate kinase OS=Staphylococcus haemolyticus (st... [more]
KPYK_STAAW1.165e-2245.38Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAS1.165e-2245.38Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAN1.165e-2245.38Pyruvate kinase OS=Staphylococcus aureus (strain N... [more]
KPYK_STAAM1.165e-2245.38Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]

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Properties
Property NameValue
Genbank description119 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213268 ID=GE213268; Name=GE213268; organism=Citrus sinensis; type=EST; length=430bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTCAATCATAGATTCAAGCAACTG
GGAGGCAACAATAACTGGCTTATTCAGCTGCCTGCAAAGCTGAACAATCT
TTTGCTGGGCTGACGGCACCTGCTCCAATGGTATCTGAGCACCCAAATCT
CCTCTGGCAACCATAGCTCCATCTGATGCTAGAATGATCTCTTCCAAGTT
CTTTAAAGAGTCGATACTCTCAATCTTTGCAATGACAGCAATATCACTAT
CACGAGATCGTGCAGCAATATAGCTCTTCAGGTGATTAATTACTTCAGCA
GACTTGACAAATGAAATGGCTATAAAATCAACACCTTCAGTAATTCCAAA
ATCGATGTCCAGCCAATCCTTAGGAGAAATTGTTGGGAGCATAGCATTAC
GCTCTCGTACCTCGGCCGCGACCACGCTAA
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