GE213268

Overview
NameGE213268
Unique NameGE213268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_STAAC (Pyruvate kinase OS=Staphylococcus aureus (strain COL) GN=pyk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.165e-22
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI E VDFIA SFV+    +  ++  +    + ++I+V  KIE+ + + N+ EI+  SDG MVARGD+G +IP E+VP  Q+ +++ C +L KPVI A+Q+L+SM
Sbjct:  167 LPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREIL--EEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSM 283          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_STAAB (Pyruvate kinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=pyk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.165e-22
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI E VDFIA SFV+    +  ++  +    + ++I+V  KIE+ + + N+ EI+  SDG MVARGD+G +IP E+VP  Q+ +++ C +L KPVI A+Q+L+SM
Sbjct:  167 LPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREIL--EEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSM 283          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_STAA8 (Pyruvate kinase OS=Staphylococcus aureus (strain NCTC 8325) GN=pyk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.165e-22
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI E VDFIA SFV+    +  ++  +    + ++I+V  KIE+ + + N+ EI+  SDG MVARGD+G +IP E+VP  Q+ +++ C +L KPVI A+Q+L+SM
Sbjct:  167 LPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREIL--EEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSM 283          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_STAA3 (Pyruvate kinase OS=Staphylococcus aureus (strain USA300) GN=pyk PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.165e-22
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI FGI E VDFIA SFV+    +  ++  +    + ++I+V  KIE+ + + N+ EI+  SDG MVARGD+G +IP E+VP  Q+ +++ C +L KPVI A+Q+L+SM
Sbjct:  167 LPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREIL--EEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSM 283          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK1_SALTY (Pyruvate kinase I OS=Salmonella typhimurium GN=pykF PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.165e-22
Identity = 52/121 (42.98%), Postives = 84/121 (69.42%), Query Frame = -3
Query:   27 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            LP ++ KD  D+ FG  +GVDF+A SF++    +  ++ ++ A   ++ I +I+KIE+ + L N +EI+ ASDG MVARGDLG +IP+E+V  AQ+ +++ C +  K VI A+Q+L+SMI+
Sbjct:  167 LPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVVEIREHLKAHGGEN-IQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIK 286          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK1_SALTI (Pyruvate kinase I OS=Salmonella typhi GN=pykF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.165e-22
Identity = 52/121 (42.98%), Postives = 84/121 (69.42%), Query Frame = -3
Query:   27 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            LP ++ KD  D+ FG  +GVDF+A SF++    +  ++ ++ A   ++ I +I+KIE+ + L N +EI+ ASDG MVARGDLG +IP+E+V  AQ+ +++ C +  K VI A+Q+L+SMI+
Sbjct:  167 LPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVVEIREHLKAHGGEN-IQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIK 286          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK1_ECOLI (Pyruvate kinase I OS=Escherichia coli (strain K12) GN=pykF PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.521e-22
Identity = 52/121 (42.98%), Postives = 84/121 (69.42%), Query Frame = -3
Query:   27 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            LP ++ KD  D+ FG  +GVDF+A SF++    +  ++ ++ A   ++ I +I+KIE+ + L N +EI+ ASDG MVARGDLG +IP+E+V  AQ+ +++ C +  K VI A+Q+L+SMI+
Sbjct:  167 LPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGEN-IHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIK 286          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK1_ECO57 (Pyruvate kinase I OS=Escherichia coli O157:H7 GN=pykF PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.521e-22
Identity = 52/121 (42.98%), Postives = 84/121 (69.42%), Query Frame = -3
Query:   27 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            LP ++ KD  D+ FG  +GVDF+A SF++    +  ++ ++ A   ++ I +I+KIE+ + L N +EI+ ASDG MVARGDLG +IP+E+V  AQ+ +++ C +  K VI A+Q+L+SMI+
Sbjct:  167 LPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGEN-IHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIK 286          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK1_AGRVI (Pyruvate kinase OS=Agrobacterium vitis GN=ttuE PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.521e-22
Identity = 57/118 (48.31%), Postives = 83/118 (70.34%), Query Frame = -3
Query:   30 ISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIA-VIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 380
            ++PKD  D++FG+  GVD+IA+SFV++A      +  I ARS  SD A +IAKIE   +L  +++I+  SD  MVARGDLG +IP E VP  Q+++++ CR   KPVIVA+Q+L+SM+
Sbjct:  174 LTPKDRKDLEFGLELGVDWIALSFVQTA------RDMIEARSLVSDRAGLIAKIEKPSALDEIDDIVALSDAIMVARGDLGVEIPPEDVPGRQKELIRACRIAAKPVIVATQMLDSMV 285          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_TRYBO (Pyruvate kinase OS=Trypanoplasma borreli GN=PYK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.987e-22
Identity = 53/119 (44.54%), Postives = 79/119 (66.39%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD +D+ FG    VDF+  SF+++A+ +N ++     +     IAVIAKIE+   + N++ II A+DG MVARGDLG +IP E+V  AQ+ I+  C ++ K VI A+Q+L+SM
Sbjct:  189 LPAVSEKDLMDLQFGAKNRVDFVFASFIRNADQVNEVRQAFGGK-----IAVIAKIENYQGIDNIDAIIDAADGIMVARGDLGVEIPAEKVVIAQKMIMSKCNKVGKTVICATQMLDSM 302          
The following BLAST results are available for this feature:
BLAST of GE213268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
KPYK_STAAC1.165e-2245.38Pyruvate kinase OS=Staphylococcus aureus (strain C... [more]
KPYK_STAAB1.165e-2245.38Pyruvate kinase OS=Staphylococcus aureus (strain b... [more]
KPYK_STAA81.165e-2245.38Pyruvate kinase OS=Staphylococcus aureus (strain N... [more]
KPYK_STAA31.165e-2245.38Pyruvate kinase OS=Staphylococcus aureus (strain U... [more]
KPYK1_SALTY1.165e-2242.98Pyruvate kinase I OS=Salmonella typhimurium GN=pyk... [more]
KPYK1_SALTI1.165e-2242.98Pyruvate kinase I OS=Salmonella typhi GN=pykF PE=3... [more]
KPYK1_ECOLI1.521e-2242.98Pyruvate kinase I OS=Escherichia coli (strain K12)... [more]
KPYK1_ECO571.521e-2242.98Pyruvate kinase I OS=Escherichia coli O157:H7 GN=p... [more]
KPYK1_AGRVI1.521e-2248.31Pyruvate kinase OS=Agrobacterium vitis GN=ttuE PE=... [more]
KPYK_TRYBO1.987e-2244.54Pyruvate kinase OS=Trypanoplasma borreli GN=PYK PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank description119 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213268 ID=GE213268; Name=GE213268; organism=Citrus sinensis; type=EST; length=430bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTCAATCATAGATTCAAGCAACTG
GGAGGCAACAATAACTGGCTTATTCAGCTGCCTGCAAAGCTGAACAATCT
TTTGCTGGGCTGACGGCACCTGCTCCAATGGTATCTGAGCACCCAAATCT
CCTCTGGCAACCATAGCTCCATCTGATGCTAGAATGATCTCTTCCAAGTT
CTTTAAAGAGTCGATACTCTCAATCTTTGCAATGACAGCAATATCACTAT
CACGAGATCGTGCAGCAATATAGCTCTTCAGGTGATTAATTACTTCAGCA
GACTTGACAAATGAAATGGCTATAAAATCAACACCTTCAGTAATTCCAAA
ATCGATGTCCAGCCAATCCTTAGGAGAAATTGTTGGGAGCATAGCATTAC
GCTCTCGTACCTCGGCCGCGACCACGCTAA
back to top