GE213268

Overview
NameGE213268
Unique NameGE213268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_TRIRE (Pyruvate kinase OS=Trichoderma reesei GN=pki1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.861e-22
Identity = 52/121 (42.98%), Postives = 77/121 (63.64%), Query Frame = -3
Query:   27 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            LP +S KD  D+ FG+   VD +  SF++ A+ I  ++  +    +   I +IAKIE+   L N  EI+  +DG MVARGDLG +IP  +V +AQ+K++ +C    KPVI A+Q+LESMI+
Sbjct:  211 LPALSEKDKADLRFGVKNNVDMVFASFIRRAQDIKDIRDVLGPEGKQ--IQIIAKIENRQGLNNFAEILEETDGVMVARGDLGIEIPAAEVFAAQKKMIAMCNIAGKPVICATQMLESMIK 329          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK2_SYNY3 (Pyruvate kinase 2 OS=Synechocystis sp. (strain PCC 6803) GN=pyk2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.861e-22
Identity = 49/117 (41.88%), Postives = 82/117 (70.09%), Query Frame = -3
Query:   30 ISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 380
            ++ KD  D+ FG+ +GVD++A+SFV++ + I+ +K  IAA  +   + VIAKIE  +++K+++ ++   DG MVARGDLG ++P E VP  Q+K++    +L  PVI A+Q+L+SM+
Sbjct:  178 MTDKDKEDLMFGLDQGVDWVALSFVRNPQDIDEIKGLIAAAGKS--VPVIAKIEKHEAIKDMQAVLEKCDGVMVARGDLGVELPAEDVPILQKKLIATANRLGIPVITATQMLDSMV 292          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_LACDE (Pyruvate kinase OS=Lactobacillus delbrueckii subsp. bulgaricus GN=pyk PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.682e-21
Identity = 51/121 (42.15%), Postives = 79/121 (65.29%), Query Frame = -3
Query:   27 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            LP I+ KD  DI FG+  G++FI  SFV+ A+ +  +++ +   +  S + +  KIES + + N++EI+  SDG MVARGD+G +IP   VP  Q+ +++ C  L KPVI A+Q+L+SM E
Sbjct:  168 LPGITEKDTDDIRFGLKHGINFIFASFVRKAQDVLDIRA-LCEEANASYVKIFPKIESQEGIDNIDEILQVSDGLMVARGDMGVEIPFINVPFVQKTLIKKCNALGKPVITATQMLDSMQE 287          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK2_AGRVI (Pyruvate kinase OS=Agrobacterium vitis GN=ttuE PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.682e-21
Identity = 52/117 (44.44%), Postives = 80/117 (68.38%), Query Frame = -3
Query:   30 ISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 380
            ++ KD  D++FG+  GVD++A+SFV+ A  +   +S +  R+      +IAKIE   +L ++E+I+  SD  MVARGDLG +IP E VP  Q++I++ CR   KPVIVA+Q+L+SM+
Sbjct:  174 LTAKDREDLEFGLELGVDWVALSFVQRARDMIEARSLVGDRA-----GLIAKIEKPSALDDIEDIVRLSDSVMVARGDLGVEIPPEDVPGKQKEIIRACRLAAKPVIVATQMLDSMV 285          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_NEUCR (Pyruvate kinase OS=Neurospora crassa GN=pyk-1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.197e-21
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = -3
Query:   27 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            LP +S KD  D+ FG+   VD +  SF++  + I  ++  +    +   I +IAKIE+   L N  EI+  +DG MVARGDLG +IP  +V +AQ+KI+ +C    KPVI A+Q+LESMI+
Sbjct:  201 LPALSEKDKADLRFGVKNKVDMVFASFIRRGQDIKDIREVLGEDGKQ--IQIIAKIENRQGLNNFAEILAETDGVMVARGDLGIEIPAAEVFAAQKKIIAMCNIAGKPVICATQMLESMIK 319          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_DEBHA (Pyruvate kinase OS=Debaryomyces hansenii GN=PYK1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.747e-21
Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  DI FG+  GV  I  SF+++ + I  ++  +    +D  I +IAKIE+   + N +EI++ +DG MVARGDLG +IP  QV   Q++++  C    KPVI A+Q+LESM
Sbjct:  192 LPALSEKDKADIKFGVKNGVHMIFASFIRTGDDIKEIRKVLGEEGKD--IQIIAKIENQQGVNNFDEILVETDGVMVARGDLGIEIPAPQVFVVQKQLIAKCNLAAKPVICATQMLESM 308          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_CHICK (Pyruvate kinase muscle isozyme OS=Gallus gallus GN=PKM2 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.747e-21
Identity = 49/121 (40.50%), Postives = 81/121 (66.94%), Query Frame = -3
Query:   27 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            LP +S KD  D+ FG+ + VD +  SF++ A  ++ ++  +  + +   I +I+KIE+ + ++  +EI+ ASDG MVARGDLG +IP E+V  AQ+ ++  C +  KP+I A+Q+LESMI+
Sbjct:  217 LPAVSEKDIQDLKFGVEQNVDMVFASFIRKAADVHAVRKVLGEKGKH--IKIISKIENHEGVRRFDEIMEASDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPIICATQMLESMIK 335          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_YARLI (Pyruvate kinase OS=Yarrowia lipolytica GN=PYK1 PE=3 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.391e-21
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D+ FG+  GVD I  SFV++A  +  ++  +  + +   I VI+KIE+   + N +EI+  +DG MVARGDLG +IP  QV  AQ++++  C    KPVI A+Q+L+SM
Sbjct:  199 LPALSEKDKADLKFGVEHGVDMIFASFVRTANDVQAIRDVLGEKGKG--IQVISKIENQQGVNNFDEILKETDGVMVARGDLGIEIPAPQVFIAQKQLIAKCNLAGKPVICATQMLDSM 315          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_KLULA (Pyruvate kinase OS=Kluyveromyces lactis GN=PYK1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.424e-20
Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D+ FG+  GV  +  SF+++A+ +  ++  +  + +D  I +I KIE+   + N ++I+  +DG MVARGDLG +IP  QV + Q+K++  C    KPVI A+Q+LESM
Sbjct:  189 LPALSEKDKSDLKFGVKNGVHMVFASFIRTAQDVLTIREVLGEQGKD--IKIIVKIENQQGVNNFDDILKVTDGVMVARGDLGIEIPAPQVFAVQKKLIAKCNLAGKPVICATQMLESM 305          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_AGABI (Pyruvate kinase OS=Agaricus bisporus GN=pkiA PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.860e-20
Identity = 52/119 (43.70%), Postives = 74/119 (62.18%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D+ FGI  GVD I  SF++  E +  ++  +      + I +I KIE+   + N +EI+  +DG MVARGDLG +IP  QV  AQ+ ++  C  + KPVIVA+Q+LESM
Sbjct:  202 LPPLSEKDKDDLRFGIRNGVDMIFASFIRRGEDVRQIREVLGPDG--ASIKIIVKIENEQGVANFDEILKEADGVMVARGDLGIEIPASQVFLAQKMMIAKCNIVGKPVIVATQMLESM 318          
The following BLAST results are available for this feature:
BLAST of GE213268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
KPYK_TRIRE9.861e-2242.98Pyruvate kinase OS=Trichoderma reesei GN=pki1 PE=3... [more]
KPYK2_SYNY39.861e-2241.88Pyruvate kinase 2 OS=Synechocystis sp. (strain PCC... [more]
KPYK_LACDE1.682e-2142.15Pyruvate kinase OS=Lactobacillus delbrueckii subsp... [more]
KPYK2_AGRVI1.682e-2144.44Pyruvate kinase OS=Agrobacterium vitis GN=ttuE PE=... [more]
KPYK_NEUCR2.197e-2142.98Pyruvate kinase OS=Neurospora crassa GN=pyk-1 PE=3... [more]
KPYK_DEBHA3.747e-2142.86Pyruvate kinase OS=Debaryomyces hansenii GN=PYK1 P... [more]
KPYK_CHICK3.747e-2140.50Pyruvate kinase muscle isozyme OS=Gallus gallus GN... [more]
KPYK_YARLI6.391e-2142.86Pyruvate kinase OS=Yarrowia lipolytica GN=PYK1 PE=... [more]
KPYK_KLULA1.424e-2040.34Pyruvate kinase OS=Kluyveromyces lactis GN=PYK1 PE... [more]
KPYK_AGABI1.860e-2043.70Pyruvate kinase OS=Agaricus bisporus GN=pkiA PE=2 ... [more]

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Properties
Property NameValue
Genbank description119 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213268 ID=GE213268; Name=GE213268; organism=Citrus sinensis; type=EST; length=430bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTCAATCATAGATTCAAGCAACTG
GGAGGCAACAATAACTGGCTTATTCAGCTGCCTGCAAAGCTGAACAATCT
TTTGCTGGGCTGACGGCACCTGCTCCAATGGTATCTGAGCACCCAAATCT
CCTCTGGCAACCATAGCTCCATCTGATGCTAGAATGATCTCTTCCAAGTT
CTTTAAAGAGTCGATACTCTCAATCTTTGCAATGACAGCAATATCACTAT
CACGAGATCGTGCAGCAATATAGCTCTTCAGGTGATTAATTACTTCAGCA
GACTTGACAAATGAAATGGCTATAAAATCAACACCTTCAGTAATTCCAAA
ATCGATGTCCAGCCAATCCTTAGGAGAAATTGTTGGGAGCATAGCATTAC
GCTCTCGTACCTCGGCCGCGACCACGCTAA
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