GE213268

Overview
NameGE213268
Unique NameGE213268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_SACKL (Pyruvate kinase OS=Saccharomyces kluyveri GN=PYK1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.429e-20
Identity = 48/119 (40.34%), Postives = 75/119 (63.03%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D+ FG+  GV  +  SF+++A+ +  ++  +    +D  + +I KIE+   + N +EI+  +DG MVARGDLG +IP  QV + Q+K++  C    KPVI A+Q+LESM
Sbjct:  189 LPALSEKDKSDLRFGVKNGVHMVFASFIRTAQDVLTIREVLGEDGKD--VKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEIPAPQVFAVQKKLIAKCNLAGKPVICATQMLESM 305          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_SCHPO (Pyruvate kinase OS=Schizosaccharomyces pombe GN=pyk1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.172e-20
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D+ FG+  GVD I  SF++ AE + H++  +    ++  I +I KIE+   + N + I+  +DG MVARGDLG +IP  QV  AQ+ ++  C    KPV  A+Q+LESM
Sbjct:  195 LPALSEKDKADLRFGVKNGVDMIFASFIRRAEDVIHIREVLGEEGKN--IKIICKIENQQGVNNFDSILDVTDGIMVARGDLGIEIPASQVFVAQKMMIAKCNIAGKPVACATQMLESM 311          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_EMENI (Pyruvate kinase OS=Emericella nidulans GN=pkiA PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.143e-20
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D+ FG+   VD +  SF++    I H++  +    R+  I +IAKIE+   + N +EI+  +DG MVARGDLG +IP  +V  AQ+ ++  C    KPVI A+Q+LESM
Sbjct:  202 LPALSEKDISDLKFGVKNKVDMVFASFIRRGSDIRHIREVLGEEGRE--IQIIAKIENQQGVNNFDEILEETDGVMVARGDLGIEIPAPKVFIAQKMMIAKCNIKGKPVICATQMLESM 318          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYR_RAT (Pyruvate kinase isozymes R/L OS=Rattus norvegicus GN=Pklr PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.411e-20
Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = -3
Query:   30 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 389
            LP +S +D LD+ FG+   VD I  SFV+ A  +  ++  +    ++  I +I+KIE+ + +K  +EI+  SDG MVARGDLG +IP E+V  AQ+ ++  C    KPV+ A+Q+LESMI
Sbjct:  261 LPGLSEQDLLDLRFGVQHNVDIIFASFVRKASDVLAVRDALGPEGQN--IKIISKIENHEGVKKFDEILEVSDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNLAGKPVVCATQMLESMI 378          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_THEAC (Pyruvate kinase OS=Thermoplasma acidophilum GN=Ta0896 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.411e-20
Identity = 53/120 (44.17%), Postives = 80/120 (66.67%), Query Frame = -3
Query:   30 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 389
            L TI+ +D   I  GI +GVDF A+SFV+ +E ++ L+ ++     D  I  I+KIE+   L N+EEI+ +SDG MVARGDLG ++PL++V  AQ+ I++   +     IVA+Q+LESM+
Sbjct:  150 LGTITDRDRAFIREGIADGVDFFALSFVQKSENVDSLRDFVIDSGGDQYI--ISKIETKSGLDNIEEIVKSSDGIMVARGDLGVELPLKEVVLAQKHIIKTAHEDGDFTIVATQVLESMV 267          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK2_CANGA (Pyruvate kinase 2 OS=Candida glabrata GN=PYK2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.411e-20
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D+ FG+  GV  I  SF+++A+ +  ++  +    +D  I VI KIE+   + N +EI+  + G MVARGDLG +IP  QV + Q+K++  C    KPVI A+Q+LESM
Sbjct:  189 LPALSEKDKEDLRFGVKNGVHMIFASFIRTAQDVLTIREVLGEEGKD--IKVIVKIENQQGVNNFDEILEVAHGVMVARGDLGIEIPAPQVLAVQKKLIAKCNLAGKPVICATQMLESM 305          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_BORBU (Pyruvate kinase OS=Borrelia burgdorferi GN=pyk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 53/121 (43.80%), Postives = 78/121 (64.46%), Query Frame = -3
Query:   27 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            L +++ KD   I+      VDFIA SFV+ ++ +  ++  + A S + D+ +I+KIE+ + + N+EEI  AS G MVARGD+G +IP E VP AQ KI Q C +   PVI A+Q+L +MIE
Sbjct:  161 LQSVTEKDKGFIELAAKYNVDFIAHSFVRHSKDVQDVQEILTA-SGNPDVKIISKIENQEGIDNIEEIAKASYGIMVARGDMGVEIPAEDVPIAQLKITQTCIKYGIPVITATQMLHTMIE 280          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_ASPNG (Pyruvate kinase OS=Aspergillus niger GN=pkiA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D+ FG+   VD +  SF++    I H++  +    ++  I +IAKIE+   + N +EI+  +DG MVARGDLG +IP  +V  AQ+ ++  C    KPVI A+Q+LESM
Sbjct:  202 LPALSEKDIADLKFGVRNKVDMVFASFIRRGSDIRHIREVLGEEGKE--IQIIAKIENQQGVNNFDEILEETDGVMVARGDLGIEIPAPKVFIAQKMMIAKCNIKGKPVICATQMLESM 318          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_ASHGO (Pyruvate kinase OS=Ashbya gossypii GN=PYK1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP +S KD  D+ FG+  GV  +  SF+++A  I  ++  +    +D  I +IAKIE+   + N +EI+  +DG MVARGDLG +IP  QV + Q+ ++  C    KPVI A+Q+LESM
Sbjct:  189 LPALSEKDKSDLRFGVKNGVHMVFASFIRTAGDILTIREILGEDGKD--IKIIAKIENQQGVNNFDEILKVTDGVMVARGDLGIEIPAPQVFAVQKMLIAKCNLAGKPVICATQMLESM 305          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYR_HUMAN (Pyruvate kinase isozymes R/L OS=Homo sapiens GN=PKLR PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.205e-19
Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = -3
Query:   30 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 389
            LP +S +D  D+ FG+  GVD +  SFV+ A  +  +++ +        I +I+KIE+ + +K  +EI+  SDG MVARGDLG +IP E+V  AQ+ ++  C    KPV+ A+Q+LESMI
Sbjct:  261 LPGLSEQDVRDLRFGVEHGVDIVFASFVRKASDVAAVRAALGPEGHG--IKIISKIENHEGVKRFDEILEVSDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNLAGKPVVCATQMLESMI 378          
The following BLAST results are available for this feature:
BLAST of GE213268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
KPYK_SACKL2.429e-2040.34Pyruvate kinase OS=Saccharomyces kluyveri GN=PYK1 ... [more]
KPYK_SCHPO3.172e-2042.02Pyruvate kinase OS=Schizosaccharomyces pombe GN=py... [more]
KPYK_EMENI4.143e-2042.02Pyruvate kinase OS=Emericella nidulans GN=pkiA PE=... [more]
KPYR_RAT5.411e-2042.50Pyruvate kinase isozymes R/L OS=Rattus norvegicus ... [more]
KPYK_THEAC5.411e-2044.17Pyruvate kinase OS=Thermoplasma acidophilum GN=Ta0... [more]
KPYK2_CANGA5.411e-2042.02Pyruvate kinase 2 OS=Candida glabrata GN=PYK2 PE=3... [more]
KPYK_BORBU7.067e-2043.80Pyruvate kinase OS=Borrelia burgdorferi GN=pyk PE=... [more]
KPYK_ASPNG7.067e-2041.18Pyruvate kinase OS=Aspergillus niger GN=pkiA PE=3 ... [more]
KPYK_ASHGO7.067e-2042.02Pyruvate kinase OS=Ashbya gossypii GN=PYK1 PE=3 SV... [more]
KPYR_HUMAN1.205e-1941.67Pyruvate kinase isozymes R/L OS=Homo sapiens GN=PK... [more]

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Properties
Property NameValue
Genbank description119 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213268 ID=GE213268; Name=GE213268; organism=Citrus sinensis; type=EST; length=430bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTCAATCATAGATTCAAGCAACTG
GGAGGCAACAATAACTGGCTTATTCAGCTGCCTGCAAAGCTGAACAATCT
TTTGCTGGGCTGACGGCACCTGCTCCAATGGTATCTGAGCACCCAAATCT
CCTCTGGCAACCATAGCTCCATCTGATGCTAGAATGATCTCTTCCAAGTT
CTTTAAAGAGTCGATACTCTCAATCTTTGCAATGACAGCAATATCACTAT
CACGAGATCGTGCAGCAATATAGCTCTTCAGGTGATTAATTACTTCAGCA
GACTTGACAAATGAAATGGCTATAAAATCAACACCTTCAGTAATTCCAAA
ATCGATGTCCAGCCAATCCTTAGGAGAAATTGTTGGGAGCATAGCATTAC
GCTCTCGTACCTCGGCCGCGACCACGCTAA
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