GE213268

Overview
NameGE213268
Unique NameGE213268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYC_TOBAC (Pyruvate kinase, cytosolic isozyme OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.878e-18
Identity = 46/122 (37.70%), Postives = 82/122 (67.21%), Query Frame = -3
Query:   27 LPTISPKDWLDI-DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            LPT++ KD  DI ++G+   +D IA+SFV+    +  ++  +   +++  I +++K+E+ + + N ++I+L SD  MVARGDLG +IP+E++  AQ+ ++  C    KPV+ A+Q+LESMI+
Sbjct:  185 LPTLTDKDKDDILNWGVPNHIDMIALSFVRKGSDLVEVRKLLGEHAKN--ILLMSKVENQEGVANFDDILLNSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIK 304          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_CHLMU (Pyruvate kinase OS=Chlamydia muridarum GN=pyk PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.064e-18
Identity = 47/127 (37.01%), Postives = 83/127 (65.35%), Query Frame = -3
Query:   30 VRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 410
            +++ +  LP ++ KD  D+ FG+ + +D IA SFV+  E I+ ++  +    R + + +IAKIE+   ++N +EI  ASDG M+ARGDLG ++ + +VP+ Q+ + ++ R+  +  I A+Q+LESMI
Sbjct:  159 IKDIDVALPFMTEKDITDLKFGVEQELDLIAASFVRCNEDIDSMRKVLENFGRPN-MPIIAKIENHLGVQNFQEIAKASDGIMIARGDLGIELSIVEVPALQKFMARVSRETGRFCITATQMLESMI 284          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYC_SOYBN (Pyruvate kinase, cytosolic isozyme OS=Glycine max PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.614e-18
Identity = 45/122 (36.89%), Postives = 82/122 (67.21%), Query Frame = -3
Query:   27 LPTISPKDWLDI-DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            LPT++ KD  DI  +G+   +D IA+SFV+    + +++  +   +++  I +++K+E+ + + N +EI+  +D  MVARGDLG +IP+E++  AQ+ ++  C  + KPV+ A+Q+LESMI+
Sbjct:  188 LPTLTEKDKEDILGWGVPNKIDMIALSFVRKGSDLVNVRKVLGPHAKN--IQLMSKVENQEGVLNFDEILRETDAFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIK 307          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_CHLTR (Pyruvate kinase OS=Chlamydia trachomatis GN=pyk PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.128e-17
Identity = 46/127 (36.22%), Postives = 82/127 (64.57%), Query Frame = -3
Query:   30 VRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 410
            +++ +  LP ++ KD  D+ FG+ + +D IA SFV+  E I+ ++  + +  R + + +IAKIE+   ++N +EI  A+DG M+ARGDLG ++ + +VP  Q+ + +  R+  +  I A+Q+LESMI
Sbjct:  159 IKDIDVALPFMTEKDIADLKFGVEQELDLIAASFVRCNEDIDSMRKVLESFGRPN-MPIIAKIENHLGVQNFQEIARAADGIMIARGDLGIELSIVEVPGLQKFMARASRETGRFCITATQMLESMI 284          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_ENCCU (Pyruvate kinase OS=Encephalitozoon cuniculi GN=PYK1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.924e-17
Identity = 45/116 (38.79%), Postives = 74/116 (63.79%), Query Frame = -3
Query:   33 ISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 380
            +  +D  DI FG+  G+D +  SFV     +  ++  + ++     + V++KIES   ++NL+EI L SDG M+ARGDLG +I LE + SAQ++I+   ++  +PVI A+Q++ESM
Sbjct:  257 LGDEDKNDIAFGLENGIDMVFASFVSCRADVEEIRRLVGSK-----VPVVSKIESCLGMRNLKEIALCSDGVMIARGDLGVEIGLENMFSAQKRILYEVKREGRPVICATQMMESM 367          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_BUCBP (Pyruvate kinase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=pykA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.283e-17
Identity = 49/118 (41.53%), Postives = 75/118 (63.56%), Query Frame = -3
Query:   30 ISPKDWLDIDFGITEGVDFIAISFVKSAEVINHL-KSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 380
            ++ KD  DI   I  GVD++A+SF +    ++H  K  +   S+   IA I + E++  LK ++EIILASD  MVARGDLG +I   ++   Q+ +++  RQLN+ VI A+Q++ESMI
Sbjct:  174 LTKKDKRDIITSIDIGVDYLAVSFPRYGSDLDHARKCAVKFGSKAKIIAKIERAEAVKDLKIIDEIILASDAIMVARGDLGVEIGESELAGIQKTLIRRARQLNRVVITATQMMESMI 291          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYC_SOLTU (Pyruvate kinase, cytosolic isozyme OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.313e-17
Identity = 44/122 (36.07%), Postives = 80/122 (65.57%), Query Frame = -3
Query:   27 LPTISPKDWLDI-DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            LPT++ KD  DI ++G+   +D IA+SFV+    + +++  +   ++   I +++K+E+ + + N +EI+  +D  MVARGDLG +IP+E++  AQ+ ++  C    K V+ A+Q+LESMI+
Sbjct:  187 LPTLTEKDKEDILEWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKR--IQLMSKVENQEGVINFDEILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLAGKAVVTATQMLESMIK 306          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_HAEIN (Pyruvate kinase OS=Haemophilus influenzae GN=pykA PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.128e-16
Identity = 47/120 (39.17%), Postives = 78/120 (65.00%), Query Frame = -3
Query:   30 ISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKN---LEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 380
            ++ KD  DI      GVDF+A+SF +S+  +N+ +    A+    +  ++AK+E  +++ N   +++IILASD  MVARGDLG +I   ++   Q+K+++  RQLN+ VI A+Q++ESMI
Sbjct:  174 LTEKDKADIITAARIGVDFLAVSFPRSSADLNYAREL--AQQAGLNAKIVAKVERAETVANDEAMDDIILASDVIMVARGDLGVEIGDPELVGVQKKLIRRSRQLNRAVITATQMMESMI 291          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK2_SALTY (Pyruvate kinase II OS=Salmonella typhimurium GN=pykA PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.740e-16
Identity = 46/120 (38.33%), Postives = 76/120 (63.33%), Query Frame = -3
Query:   30 ISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKN---LEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 380
            ++ KD  DI      GVD++A+SF +  E +N+ +    AR    D  ++AK+E  +++ +   +++IILASD  MVARGDLG +I   ++   Q+ +++  RQLN+ VI A+Q++ESMI
Sbjct:  174 LTEKDKADIQTAALIGVDYLAVSFPRCGEDLNYARRL--ARDAGCDAKIVAKVERAEAVCDQNAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMI 291          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK2_ECOLI (Pyruvate kinase II OS=Escherichia coli (strain K12) GN=pykA PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 6.191e-16
Identity = 46/120 (38.33%), Postives = 76/120 (63.33%), Query Frame = -3
Query:   30 ISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKN---LEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMI 380
            ++ KD  DI      GVD++A+SF +  E +N+ +    AR    D  ++AK+E  +++ +   +++IILASD  MVARGDLG +I   ++   Q+ +++  RQLN+ VI A+Q++ESMI
Sbjct:  174 LTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRL--ARDAGCDAKIVAKVERAEAVCSQDAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMI 291          
The following BLAST results are available for this feature:
BLAST of GE213268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
KPYC_TOBAC3.878e-1837.70Pyruvate kinase, cytosolic isozyme OS=Nicotiana ta... [more]
KPYK_CHLMU5.064e-1837.01Pyruvate kinase OS=Chlamydia muridarum GN=pyk PE=3... [more]
KPYC_SOYBN6.614e-1836.89Pyruvate kinase, cytosolic isozyme OS=Glycine max ... [more]
KPYK_CHLTR1.128e-1736.22Pyruvate kinase OS=Chlamydia trachomatis GN=pyk PE... [more]
KPYK_ENCCU1.924e-1738.79Pyruvate kinase OS=Encephalitozoon cuniculi GN=PYK... [more]
KPYK_BUCBP3.283e-1741.53Pyruvate kinase OS=Buchnera aphidicola subsp. Baiz... [more]
KPYC_SOLTU7.313e-1736.07Pyruvate kinase, cytosolic isozyme OS=Solanum tube... [more]
KPYK_HAEIN2.128e-1639.17Pyruvate kinase OS=Haemophilus influenzae GN=pykA ... [more]
KPYK2_SALTY4.740e-1638.33Pyruvate kinase II OS=Salmonella typhimurium GN=py... [more]
KPYK2_ECOLI6.191e-1638.33Pyruvate kinase II OS=Escherichia coli (strain K12... [more]

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Properties
Property NameValue
Genbank description119 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213268 ID=GE213268; Name=GE213268; organism=Citrus sinensis; type=EST; length=430bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTCAATCATAGATTCAAGCAACTG
GGAGGCAACAATAACTGGCTTATTCAGCTGCCTGCAAAGCTGAACAATCT
TTTGCTGGGCTGACGGCACCTGCTCCAATGGTATCTGAGCACCCAAATCT
CCTCTGGCAACCATAGCTCCATCTGATGCTAGAATGATCTCTTCCAAGTT
CTTTAAAGAGTCGATACTCTCAATCTTTGCAATGACAGCAATATCACTAT
CACGAGATCGTGCAGCAATATAGCTCTTCAGGTGATTAATTACTTCAGCA
GACTTGACAAATGAAATGGCTATAAAATCAACACCTTCAGTAATTCCAAA
ATCGATGTCCAGCCAATCCTTAGGAGAAATTGTTGGGAGCATAGCATTAC
GCTCTCGTACCTCGGCCGCGACCACGCTAA
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