EY729979

Overview
NameEY729979
Unique NameEY729979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.627e-14
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = -2
Query:  322 TNLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 549
            T     FP+F K+DVNGS+A P++  LK      L   GIKWNFTKFL+ RDG+VV R+APTT P  + ++I+ L+
Sbjct:   93 TRFKAEFPIFDKVDVNGSNAAPVYKYLKSSKG-GLFGDGIKWNFTKFLVDRDGKVVDRYAPTTSPASIEKDIKKLI 167          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: SARZ_STAS1 (HTH-type transcriptional regulator sarZ OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sarZ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = -1
Query:    8 MTDLSLALDDQLCFKLYAASRAVTRAYKPMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLT 319
            M +    L+ QLCF  Y +S+ + + Y   L +  LTY  Y+V+L +         +  +K LG R+ LDSGTLTPLLK+LE+   V R R   DER + ++LT
Sbjct:    1 MEEKDNTLERQLCFLFYVSSKEIIKKYTSYLKEFDLTYTGYIVLLAI-----GVEEKLNIKTLGARVFLDSGTLTPLLKKLEKKGYVTRTREIDDERNLQIALT 99          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: SARZ_STAHJ (HTH-type transcriptional regulator sarZ OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sarZ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = -1
Query:    5 LDDQLCFKLYAASRAVTRAYKPMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTD 298
            L +QLCF LY  S+ V + Y   L +  LTY  ++V++ +   +        +K+LG R+ LDSGTLTPLLK+LE+   V+R R  +DER + ++LT+
Sbjct:    8 LSNQLCFLLYVTSKEVIKKYTYYLKKHDLTYTSFMVIMAIENEEKI-----NIKSLGRRVFLDSGTLTPLLKKLEKKGYVQRMREKEDERNLQITLTE 100          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: SARZ_STAAW (HTH-type transcriptional regulator sarZ OS=Staphylococcus aureus (strain MW2) GN=sarZ PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = -1
Query:    2 LDDQLCFKLYAASRAVTRAYKPMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTDE 298
            L  QLCF  Y +S+ + + Y   L +  LTY  Y+V++ +   +        +K LGER+ LDSGTLTPLLK+LE+   V R R  +DER + +SLT++
Sbjct:    8 LSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKL-----NIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQ 101          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: SARZ_STAAS (HTH-type transcriptional regulator sarZ OS=Staphylococcus aureus (strain MSSA476) GN=sarZ PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = -1
Query:    2 LDDQLCFKLYAASRAVTRAYKPMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTDE 298
            L  QLCF  Y +S+ + + Y   L +  LTY  Y+V++ +   +        +K LGER+ LDSGTLTPLLK+LE+   V R R  +DER + +SLT++
Sbjct:    8 LSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKL-----NIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQ 101          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: SARZ_STAAN (HTH-type transcriptional regulator sarZ OS=Staphylococcus aureus (strain N315) GN=sarZ PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = -1
Query:    2 LDDQLCFKLYAASRAVTRAYKPMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTDE 298
            L  QLCF  Y +S+ + + Y   L +  LTY  Y+V++ +   +        +K LGER+ LDSGTLTPLLK+LE+   V R R  +DER + +SLT++
Sbjct:    8 LSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKL-----NIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQ 101          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: SARZ_STAAM (HTH-type transcriptional regulator sarZ OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sarZ PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = -1
Query:    2 LDDQLCFKLYAASRAVTRAYKPMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTDE 298
            L  QLCF  Y +S+ + + Y   L +  LTY  Y+V++ +   +        +K LGER+ LDSGTLTPLLK+LE+   V R R  +DER + +SLT++
Sbjct:    8 LSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKL-----NIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQ 101          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: SARZ_STAAC (HTH-type transcriptional regulator sarZ OS=Staphylococcus aureus (strain COL) GN=sarZ PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = -1
Query:    2 LDDQLCFKLYAASRAVTRAYKPMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTDE 298
            L  QLCF  Y +S+ + + Y   L +  LTY  Y+V++ +   +        +K LGER+ LDSGTLTPLLK+LE+   V R R  +DER + +SLT++
Sbjct:    8 LSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKL-----NIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQ 101          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: SARZ_STAAB (HTH-type transcriptional regulator sarZ OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sarZ PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = -1
Query:    2 LDDQLCFKLYAASRAVTRAYKPMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTDE 298
            L  QLCF  Y +S+ + + Y   L +  LTY  Y+V++ +   +        +K LGER+ LDSGTLTPLLK+LE+   V R R  +DER + +SLT++
Sbjct:    8 LSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKL-----NIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQ 101          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: SARZ_STAA8 (HTH-type transcriptional regulator sarZ OS=Staphylococcus aureus (strain NCTC 8325) GN=sarZ PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = -1
Query:    2 LDDQLCFKLYAASRAVTRAYKPMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTDE 298
            L  QLCF  Y +S+ + + Y   L +  LTY  Y+V++ +   +        +K LGER+ LDSGTLTPLLK+LE+   V R R  +DER + +SLT++
Sbjct:    8 LSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKL-----NIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQ 101          
The following BLAST results are available for this feature:
BLAST of EY729979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
GPX4_MESCR2.627e-1450.00Probable phospholipid hydroperoxide glutathione pe... [more]
SARZ_STAS15.852e-1439.42HTH-type transcriptional regulator sarZ OS=Staphyl... [more]
SARZ_STAHJ5.852e-1440.82HTH-type transcriptional regulator sarZ OS=Staphyl... [more]
SARZ_STAAW5.852e-1441.41HTH-type transcriptional regulator sarZ OS=Staphyl... [more]
SARZ_STAAS5.852e-1441.41HTH-type transcriptional regulator sarZ OS=Staphyl... [more]
SARZ_STAAN5.852e-1441.41HTH-type transcriptional regulator sarZ OS=Staphyl... [more]
SARZ_STAAM5.852e-1441.41HTH-type transcriptional regulator sarZ OS=Staphyl... [more]
SARZ_STAAC5.852e-1441.41HTH-type transcriptional regulator sarZ OS=Staphyl... [more]
SARZ_STAAB5.852e-1441.41HTH-type transcriptional regulator sarZ OS=Staphyl... [more]
SARZ_STAA85.852e-1441.41HTH-type transcriptional regulator sarZ OS=Staphyl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-023-H08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729979 ID=EY729979; Name=EY729979; organism=Citrus sinensis; type=EST; length=790bp
CTTCATCGGTCAGGCTCAGGTGCACTTCACGCTCATCCTGCGCACTGCGC
TGACGCCGCACCAGAGCCAGCTGCTCCAGGCGCTTGAGCAGCGGCGTCAG
CGTGCCGGAATCCAGCATCAAGCGCTCGCCCAAGGCCTTGACCGTAGGCT
GCGATACCGCTGCAGCCTGCCATTCCCACAACACCAGCATCACCAGGTAT
TGCGGGTAGGTCAGCCCCAACTGATCGAGCATCGGCTTGTAGGCCCGGGT
AACCGCGCGGGAGGCGGCGTAGAGCTTGAAGCACAGTTGGTCGTCAAGCG
CCAAAGACAGGTCGGTCATTTGAGCAGGGCTTCAATCTCTTGGGTCAGGT
CCTGAGGCTTGGTGGTCGGGGCAAAACGCTTGACCACCTGGCCGTCGCGG
CCGATCAGGAACTTGGTGAAGTTCCACTTGATGCCCCTTGGAACCAGNNC
AACCGGGGCCTGCTTTTTAAGCTGTACGAACAATGGGTGAGCATCGCTGC
CATTGACGTCGATCTTCTTGAACAGCGGGAAACTGACACCCAAGTTAGTT
CGCAAAATCCCGAAATGGGGCCCTCTTGGCGGGGCCCTCTAAAAGATCAA
GCTTAGTTACGCTTCATTGCGAGTCTAACCCTCTAAATGGGCCCTAAATC
AATTCCTGGGCGTCTTTTTACACGTCTTGAATGGAAAAACCCGGGTTACC
AAATAATCGCCTGGAAGGAACCCCCTTTTCCAAGGGGGGTATATAAAAAG
GGCCCCCAGATCCCCCCCCCAAATGTGCCCCCCAATGGGA
back to top