EY729979

Overview
NameEY729979
Unique NameEY729979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11890 contig Csv1_Contig11890:1..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPX4_CITSI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.104e-12
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = -2
Query:  319 TNLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALLK 549
            T     FP+F K+DVNG +A PL+  LK      L    IKWNF+KFL+ ++G VV+R+APTT P  + ++I+ LL+
Sbjct:   90 TRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 165          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPX6_ARATH (Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = -2
Query:  322 TNLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 549
            T     +P+F K+DVNG  A P++  LK      L   GIKWNF KFL+ +DG VV RFAPTT P  + ++++ LL
Sbjct:  154 TRFKAEYPIFDKVDVNGDKAAPVYKFLKSSKG-GLFGDGIKWNFAKFLVDKDGNVVDRFAPTTSPLSIEKDVKKLL 228          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPX1_SCHMA (Glutathione peroxidase OS=Schistosoma mansoni GN=GPX1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = -2
Query:  319 GVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALLK 540
            GV F +F KI VNGSDA  L+  LK +    L    IKWNF+KFL+ R GQ VKR++PTT P D+  +I  LL+
Sbjct:   95 GVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLT-NNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLE 167          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.211e-12
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  322 TNLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 549
            T     +P+F+K+ VNG +A P++  LK + P  L  R IKWNFTKFL+G+DGQV+ R+  T  P  + ++IE  L
Sbjct:   95 TRFKAEYPVFQKVRVNGQNAAPVYKFLKSKKPSFLGSR-IKWNFTKFLVGKDGQVIDRYGTTVSPLSIQKDIEKAL 169          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: BSAA_STAEQ (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=bsaA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = -2
Query:  319 FGILRTNLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALLK 564
            + + +   G++FP+  KI+VNG   HPL+  LK + P  L    IKWNFTKF++ + G +VKRF P   P  + + I  LLK
Sbjct:   78 YRVYKYKFGITFPIHAKINVNGEHEHPLYTLLKCKQP-GLFGSQIKWNFTKFVVDQQGNIVKRFLPCDNPNQMEKLIRQLLK 158          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPX4_HELAN (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  322 TNLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 549
            T     +P+F K++VNG +A PL+  LK      L    IKWNFTKFL+ R+G+VV R+APTT P  + ++I+ LL
Sbjct:  103 TRFKAEYPVFSKVNVNGKEADPLYKFLKSSKGGFLGD-SIKWNFTKFLVDREGKVVDRYAPTTSPLSIEKDIKKLL 177          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPX1_SCHPO (Glutathione peroxidase OS=Schizosaccharomyces pombe GN=gpx1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  322 NLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 546
            N GV+FP+  KI+VNG +  P++  LK Q     + R IKWNF KFL+ R GQV++R++  +KP+ L  +IE++L
Sbjct:   85 NYGVTFPVLAKINVNGDNVDPVYQFLKSQKKQLGLER-IKWNFEKFLVNRQGQVIERYSSISKPEHLENDIESVL 158          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPX4_SOLLC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  322 TNLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 549
            T     +P+F K+DVNG +A PL+ +  K +       GIKWNF+KFLI ++G VV R++PTT P  + ++I+ LL
Sbjct:   92 TRFKAEYPIFDKVDVNGDNAAPLY-RFLKSSKGGFFGDGIKWNFSKFLIDKEGHVVDRYSPTTSPASMEKDIKKLL 166          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: BTUE_ECOLI (Vitamin B12 transport periplasmic protein btuE OS=Escherichia coli (strain K12) GN=btuE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = -2
Query:  349 TNLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPR-------------------GIKWNFTKFLIGRDGQVVKRFAPTTKPQD 549
            T  GV+FP+F KI+VNG   HPL+ +L   AP  + P                     I WNF KFL+GRDG+V++RF+P   P+D
Sbjct:   85 TTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGKVIQRFSPDMTPED 170          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMF (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=gpxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = -2
Query:  322 GVSFPLFKKIDVNGSDAHPLFVQLKKQAP------------VXLVPRG-------IKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 540
            G  F +F KI+VNG++  PL+  LK   P            + L   G       IKWNFTKFL+ RDG+VV+RFAP+  P+++  +I ALL
Sbjct:   86 GTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERFAPSVTPEEIEADIRALL 177          
The following BLAST results are available for this feature:
BLAST of EY729979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
GPX4_CITSI1.104e-1245.45Probable phospholipid hydroperoxide glutathione pe... [more]
GPX6_ARATH2.459e-1246.05Probable phospholipid hydroperoxide glutathione pe... [more]
GPX1_SCHMA2.459e-1251.35Glutathione peroxidase OS=Schistosoma mansoni GN=G... [more]
GPX5_ARATH3.211e-1244.74Probable glutathione peroxidase 5 OS=Arabidopsis t... [more]
BSAA_STAEQ4.194e-1241.46Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX4_HELAN5.477e-1246.05Probable phospholipid hydroperoxide glutathione pe... [more]
GPX1_SCHPO7.154e-1245.33Glutathione peroxidase OS=Schizosaccharomyces pomb... [more]
GPX4_SOLLC9.343e-1243.42Probable phospholipid hydroperoxide glutathione pe... [more]
BTUE_ECOLI9.343e-1240.70Vitamin B12 transport periplasmic protein btuE OS=... [more]
GPXA_NEIMF1.220e-1141.30Glutathione peroxidase homolog OS=Neisseria mening... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-023-H08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729979 ID=EY729979; Name=EY729979; organism=Citrus sinensis; type=EST; length=790bp
CTTCATCGGTCAGGCTCAGGTGCACTTCACGCTCATCCTGCGCACTGCGC
TGACGCCGCACCAGAGCCAGCTGCTCCAGGCGCTTGAGCAGCGGCGTCAG
CGTGCCGGAATCCAGCATCAAGCGCTCGCCCAAGGCCTTGACCGTAGGCT
GCGATACCGCTGCAGCCTGCCATTCCCACAACACCAGCATCACCAGGTAT
TGCGGGTAGGTCAGCCCCAACTGATCGAGCATCGGCTTGTAGGCCCGGGT
AACCGCGCGGGAGGCGGCGTAGAGCTTGAAGCACAGTTGGTCGTCAAGCG
CCAAAGACAGGTCGGTCATTTGAGCAGGGCTTCAATCTCTTGGGTCAGGT
CCTGAGGCTTGGTGGTCGGGGCAAAACGCTTGACCACCTGGCCGTCGCGG
CCGATCAGGAACTTGGTGAAGTTCCACTTGATGCCCCTTGGAACCAGNNC
AACCGGGGCCTGCTTTTTAAGCTGTACGAACAATGGGTGAGCATCGCTGC
CATTGACGTCGATCTTCTTGAACAGCGGGAAACTGACACCCAAGTTAGTT
CGCAAAATCCCGAAATGGGGCCCTCTTGGCGGGGCCCTCTAAAAGATCAA
GCTTAGTTACGCTTCATTGCGAGTCTAACCCTCTAAATGGGCCCTAAATC
AATTCCTGGGCGTCTTTTTACACGTCTTGAATGGAAAAACCCGGGTTACC
AAATAATCGCCTGGAAGGAACCCCCTTTTCCAAGGGGGGTATATAAAAAG
GGCCCCCAGATCCCCCCCCCAAATGTGCCCCCCAATGGGA
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