EY729979

Overview
NameEY729979
Unique NameEY729979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMC (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup C GN=gpxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = -2
Query:  322 GVSFPLFKKIDVNGSDAHPLFVQLKKQAP------------VXLVPRG-------IKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 540
            G  F +F KI+VNG++  PL+  LK   P            + L   G       IKWNFTKFL+ RDG+VV+RFAP+  P+++  +I ALL
Sbjct:   86 GTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERFAPSVTPEEIEADIRALL 177          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMB (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup B GN=gpxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = -2
Query:  322 GVSFPLFKKIDVNGSDAHPLFVQLKKQAP------------VXLVPRG-------IKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 540
            G  F +F KI+VNG++  PL+  LK   P            + L   G       IKWNFTKFL+ RDG+VV+RFAP+  P+++  +I ALL
Sbjct:   86 GTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERFAPSVTPEEIEADIRALL 177          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMA (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup A GN=gpxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = -2
Query:  322 GVSFPLFKKIDVNGSDAHPLFVQLKKQAP------------VXLVPRG-------IKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 540
            G  F +F KI+VNG++  PL+  LK   P            + L   G       IKWNFTKFL+ RDG+VV+RFAP+  P+++  +I ALL
Sbjct:   86 GTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERFAPSVTPEEIEADIRALL 177          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPX2_ARATH (Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = -2
Query:  322 TNLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 549
            T     FP+F K+DVNG +  PL+  LK +    L+   IKWNFTKFL+  DG+V++R++P T P    ++I+  L
Sbjct:   90 TRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLLID-AIKWNFTKFLVSPDGKVLQRYSPRTSPLQFEKDIQTAL 164          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPX3_ARATH (Probable glutathione peroxidase 3, mitochondrial OS=Arabidopsis thaliana GN=GPX3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = -2
Query:  322 FPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 531
            FP+F KI+VNG +  PL+  LK+Q    L    IKWNF KFL+ R G VV R+APTT P ++ ++I  LL
Sbjct:  135 FPIFDKIEVNGKNTCPLYNFLKEQKG-GLFGDAIKWNFAKFLVDRQGNVVDRYAPTTSPLEIEKDIVKLL 203          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = -2
Query:  322 TNLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 549
            T     +P+F K+DVNG +A PL+  LK           IKWNF+KFL+ ++G VV R++PTT P  + ++I+ LL
Sbjct:   92 TRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKG-GFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = -2
Query:  322 TNLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 549
            T     +P+F K+DVNG +A PL+  LK           IKWNF+KFL+ ++G VV R++PTT P  + ++I+ LL
Sbjct:   92 TRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKG-GFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = -2
Query:  322 TNLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 549
            T     +P+F K+DVNG +A PL+  LK           IKWNF+KFL+ ++G VV R++PTT P  + ++I+ LL
Sbjct:   93 TRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKG-GFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 167          
The following BLAST results are available for this feature:
BLAST of EY729979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
GPXA_NEIMC1.220e-1141.30Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMB1.220e-1141.30Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMA1.220e-1141.30Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPX2_ARATH2.718e-1142.11Probable glutathione peroxidase 2 OS=Arabidopsis t... [more]
GPX3_ARATH3.550e-1150.00Probable glutathione peroxidase 3, mitochondrial O... [more]
GPX4_TOBAC7.909e-1142.11Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_NICSY7.909e-1142.11Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_GOSHI7.909e-1142.11Probable phospholipid hydroperoxide glutathione pe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-023-H08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729979 ID=EY729979; Name=EY729979; organism=Citrus sinensis; type=EST; length=790bp
CTTCATCGGTCAGGCTCAGGTGCACTTCACGCTCATCCTGCGCACTGCGC
TGACGCCGCACCAGAGCCAGCTGCTCCAGGCGCTTGAGCAGCGGCGTCAG
CGTGCCGGAATCCAGCATCAAGCGCTCGCCCAAGGCCTTGACCGTAGGCT
GCGATACCGCTGCAGCCTGCCATTCCCACAACACCAGCATCACCAGGTAT
TGCGGGTAGGTCAGCCCCAACTGATCGAGCATCGGCTTGTAGGCCCGGGT
AACCGCGCGGGAGGCGGCGTAGAGCTTGAAGCACAGTTGGTCGTCAAGCG
CCAAAGACAGGTCGGTCATTTGAGCAGGGCTTCAATCTCTTGGGTCAGGT
CCTGAGGCTTGGTGGTCGGGGCAAAACGCTTGACCACCTGGCCGTCGCGG
CCGATCAGGAACTTGGTGAAGTTCCACTTGATGCCCCTTGGAACCAGNNC
AACCGGGGCCTGCTTTTTAAGCTGTACGAACAATGGGTGAGCATCGCTGC
CATTGACGTCGATCTTCTTGAACAGCGGGAAACTGACACCCAAGTTAGTT
CGCAAAATCCCGAAATGGGGCCCTCTTGGCGGGGCCCTCTAAAAGATCAA
GCTTAGTTACGCTTCATTGCGAGTCTAACCCTCTAAATGGGCCCTAAATC
AATTCCTGGGCGTCTTTTTACACGTCTTGAATGGAAAAACCCGGGTTACC
AAATAATCGCCTGGAAGGAACCCCCTTTTCCAAGGGGGGTATATAAAAAG
GGCCCCCAGATCCCCCCCCCAAATGTGCCCCCCAATGGGA
back to top