EY729428

Overview
NameEY729428
Unique NameEY729428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729428 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 47/143 (32.87%), Postives = 81/143 (56.64%), Query Frame = 3
Query:   15 KESDGVSVSDRVMSQLLVELDGL---HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 431
            + S+    + R+ ++ LV+ DGL    +   + V+AATNRP ++D A LR  RF + +YV  P+   RE + R  L+K     SD ++  LA L+EG +G+D++ + R+AA+  I E L+   +      T +R ++ S+ H+
Sbjct:  611 RSSNEHEATRRLKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALR--RFPKRVYVTLPDRDTRELLLRRLLQKQGSPLSDADLAHLAQLTEGYSGSDLTALARDAALEPIRE-LNVEEVKNMD-PTKLRSIRESDFHN 749          
BLAST of EY729428 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 45/136 (33.09%), Postives = 80/136 (58.82%), Query Frame = 3
Query:   39 SDRVMSQLLVELDGLHQRVN---VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK--IPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 431
            S R+ ++ LVE DGL    +   + V+AATNRP ++D A LR  RF + +YV  P+E  RE +    L+K   P  +D  +R L+ +++G +G+D++ + ++AA+  I E L+  ++    +  A+RH+   + H+
Sbjct:  629 SRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDA-LRRLSKITDGYSGSDLTALAKDAALEPIRE-LNVEQVKCLDI-NAMRHITEKDFHN 759          
BLAST of EY729428 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 39/105 (37.14%), Postives = 66/105 (62.86%), Query Frame = 3
Query:   45 RVMSQLLVELDGLHQRVNVT-VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 353
            R+ ++ LV++ G+    + T V+ ATN P  +D A+ R  RF++ +Y+  P E  R ++FR+HL   P + +D NI ELA  +EG +GADIS+I R++ +  + +
Sbjct:  246 RIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
BLAST of EY729428 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 39/105 (37.14%), Postives = 66/105 (62.86%), Query Frame = 3
Query:   45 RVMSQLLVELDGLHQRVNVT-VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 353
            R+ ++ LV++ G+    + T V+ ATN P  +D A+ R  RF++ +Y+  P E  R ++FR+HL   P + +D NI ELA  +EG +GADIS+I R++ +  + +
Sbjct:  246 RIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
BLAST of EY729428 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 39/105 (37.14%), Postives = 66/105 (62.86%), Query Frame = 3
Query:   45 RVMSQLLVELDGLHQRVNVT-VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 353
            R+ ++ LV++ G+    + T V+ ATN P  +D A+ R  RF++ +Y+  P E  R ++FR+HL   P + +D NI ELA  +EG +GADIS+I R++ +  + +
Sbjct:  246 RIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
BLAST of EY729428 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 3
Query:   42 DRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLR--KIPCSSDVNIRELACLSEGCTG 302
            ++ ++QLLVE+DG+    +V V+A+TNR D +D AL+RPGR DR +++  P   +R EIF  HL+  K+   S    + LA L+ G +G
Sbjct:  430 EQTLNQLLVEMDGMGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSG 518          
BLAST of EY729428 vs. ExPASy Swiss-Prot
Match: SPAST_DROAN (Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 47/143 (32.87%), Postives = 81/143 (56.64%), Query Frame = 3
Query:   15 KESDGVSVSDRVMSQLLVELDGLHQRVN---VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN-IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHS 431
            + S+    S R+ ++ LVE DGL    +   + V+AATNRP ++D A LR  RF + +YV  P+E  RE +    L+K     D   +R LA  ++G +G+D++ + ++AA+  I E L+  ++    + +A+R +  S+ HS
Sbjct:  603 RSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLSRLLQKQGSPLDTEALRRLAKTTDGYSGSDLTALAKDAALEPIRE-LNVEQVKCLDI-SAMRAITESDFHS 741          
The following BLAST results are available for this feature:
BLAST of EY729428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
SPAST_ANOGA4.252e-1132.87Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]
SPAST_DROPE5.553e-1133.09Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]
VPS4A_RAT7.253e-1137.14Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_MOUSE7.253e-1137.14Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN7.253e-1137.14Vacuolar protein sorting-associated protein 4A OS=... [more]
SPG7_RAT7.253e-1141.57Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
SPAST_DROAN9.473e-1132.87Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-016-H03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729428 ID=EY729428; Name=EY729428; organism=Citrus sinensis; type=EST; length=884bp
CCACGCGTCCGGGGAAGGAAAGTGATGGGGTTTCTGTTTCTGATCGGGTT
ATGAGTCAACTTCTTGTTGAATTGGATGGCCTGCATCAAAGAGTTAATGT
TACTGTTATTGCTGCTACAAATCGACCAGACAAGATTGATCCTGCCCTGT
TGCGACCAGGACGCTTTGACAGGCTTCTGTATGTGGGACCTCCAAATGAG
ACTGACCGAGAAGAAATATTCCGAATTCATTTGCGTAAAATTCCTTGCAG
CTCTGATGTAAACATAAGAGAACTGGCTTGCCTCTCAGAAGGCTGTACTG
GGGCTGATATATCATTAATCTGCCGAGAGGCAGCCATTTCAGCCATTGAG
GAGAACCTCGATGCATCAAGAATAACAATGCAACACTTGAAGACTGCAAT
TAGACACGTACAACCATCGGAGATTCATTCTTACAAGGAGCTCTCAGCTA
AGTTCCAAAGGCTTGTACACTCTAATGCGGAGGCTGATGAATCAGGATAT
CAGCTGCGCCCGAGTAAATCAATCGGATTGAATATGTGGTCCCTAATAAA
ATCCATTGCACTGTTCCTATGTCGCTTCCCAGCAGGCCTCTCACAATCAG
AGTCTGGTTCAAGCGGGTAGCTAAAGTTGTCCTGTTAGTTTATACGGTGT
TCCTANTACATTACCAGCAGCTCCAGGGGATTAGTTTCAGAAGATATGCA
TGATTCTGCCTGATCACCANAGCTTGGGCAAGAGGCTGGAATCTTGTAAA
GATTCTTGAAAGTGGAGTTAGTTTCTCAATATACCCAGCTTTGTGCCTGG
ATGCCCATTGCCAGTGAACAGATAGACCTAAATTAGTGGGACCCTTCCTA
CATGGTGAACAAACGTCCCGATGGTTGTCGGGTC
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