EY729419

Overview
NameEY729419
Unique NameEY729419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: SYGB_JANMA (Glycyl-tRNA synthetase beta subunit OS=Janthinobacterium sp. (strain Marseille) GN=glyS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 45/106 (42.45%), Postives = 54/106 (50.94%), Query Frame = -3
Query:  248 KRIGNLLKKAEGEIGA-VNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 562
            KR+GN+LKK EG + A V+                                 A+L+ LA  R PVDAFF  +MV AED A+R NR  LL  LH  MNQVADIS+LA
Sbjct:  594 KRVGNILKKVEGTVAAQVDTALLKEPAEIALNQTLTTVKPQAEAAFARGDYTASLQALAALRNPVDAFFDGVMVNAEDIALRNNRQGLLATLHQAMNQVADISKLA 699          
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: SYGB_AZOSB (Glycyl-tRNA synthetase beta subunit OS=Azoarcus sp. (strain BH72) GN=glyS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.202e-11
Identity = 46/105 (43.81%), Postives = 51/105 (48.57%), Query Frame = -3
Query:  248 KRIGNLLKKAEGEIGAVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 562
            KRI N+LKKAEG  G  +                                   L  LA  R  VDAFF  +MVMAE+P  R NRLALL QL  LMNQVADISRL+
Sbjct:  590 KRIVNILKKAEGAPGEPDVALLQEDAEKALFHRVIEIAPLVKSHVANEDYTDALCVLAGLRAEVDAFFDGVMVMAEEPLTRQNRLALLAQLAGLMNQVADISRLS 694          
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: SYGB_NEIMB (Glycyl-tRNA synthetase beta subunit OS=Neisseria meningitidis serogroup B GN=glyS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 42/106 (39.62%), Postives = 52/106 (49.06%), Query Frame = -3
Query:  245 KRIGNLLKKAEGEIGAVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLAQ 562
            KR+ NLLKKA+ E+GAVN+                                  L  LA  +  VDAFF  +MVMAED AV+ NRL LL +L   MN VADI+ L +
Sbjct:  582 KRVQNLLKKADAELGAVNESLLQQDEEKALFAAAQGLQPKIAAAVAEGNFQTALSELASVKPQVDAFFDGVMVMAEDAAVKQNRLNLLNRLAEQMNAVADIALLGE 687          
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: SYGB_NEIG1 (Glycyl-tRNA synthetase beta subunit OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=glyS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 42/106 (39.62%), Postives = 52/106 (49.06%), Query Frame = -3
Query:  245 KRIGNLLKKAEGEIGAVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLAQ 562
            KR+ NLLKKA+ E+GAVN+                                  L  LA  +  VDAFF  +MVMAED AV+ NRL LL +L   MN VADI+ L +
Sbjct:  582 KRVQNLLKKADAELGAVNESLLQQDEEKALYAAAQGLQPKIAAAVAEGNFQTALSELASVKPQVDAFFDGVMVMAEDAAVKQNRLNLLNRLAGQMNAVADIALLGE 687          
BLAST of EY729419 vs. ExPASy Swiss-Prot
Match: SYGB_CHRSD (Glycyl-tRNA synthetase beta subunit OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=glyS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = -3
Query:  245 LRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLAQ 403
            L  LAQ R PVDAFF D+MVMAED AVR NRLALL  L +L  +VADI++L Q
Sbjct:  636 LDVLAQLRGPVDAFFEDVMVMAEDEAVRRNRLALLASLQSLFLEVADIAQLQQ 688          
The following BLAST results are available for this feature:
BLAST of EY729419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SYGB_JANMA1.444e-1142.45Glycyl-tRNA synthetase beta subunit OS=Janthinobac... [more]
SYGB_AZOSB4.202e-1143.81Glycyl-tRNA synthetase beta subunit OS=Azoarcus sp... [more]
SYGB_NEIMB7.167e-1139.62Glycyl-tRNA synthetase beta subunit OS=Neisseria m... [more]
SYGB_NEIG19.361e-1139.62Glycyl-tRNA synthetase beta subunit OS=Neisseria g... [more]
SYGB_CHRSD9.361e-1166.04Glycyl-tRNA synthetase beta subunit OS=Chromohalob... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-016-F09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729419 ID=EY729419; Name=EY729419; organism=Citrus sinensis; type=EST; length=564bp
CTGCCGCCGGCCGCGGCCAGCTCGCGCCGCATCTTGGTGTGGATGGCGGT
CAGCGTGTCCATGTCGAACAGGCCACGGGCCAGGCCCGACTGGTTGGTGG
CGACCACCACCGTCCAGTCCGCCTGGGTCAGGCGGGCGATGGCCTGCAGG
CTGCCGGGCAGGGCGATCCATTCGTCGGGACTTTTGACGAAGGCGTCGCT
GTCCTGGTTGATGACGCCGTCGCGGTCGAGGATGATGAGCTTCACTGTGC
CAGCCTGGAAATGTCAGCGACCTGGTTCATCAGGGTGTGCAGCTGGCCCA
GCAGCGCCAGCCGGTTGGCGCGCACCGCCGGGTCTTCGGCCATGACCATG
ATGTCGGCGAAGAAGGCGTCCACCGGCTCGCGCGCCTGCGCCAGGGTGCG
CAGGTTGGCGGCGAANTCGCCGGCTGCCAGTTGCGCCTCGGCCTGCGGGC
GCAGCGCGGCGATGGCGGCGGCCAGCGCCTTTTCGGCGGGCTCGACCAGG
GCGGCGTCATTGACCGCGCCGATCTCGCCCTCGGCCTTCTTGAGCAAGTT
GCCGATGCGCTTGT
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