EY729385

Overview
NameEY729385
Unique NameEY729385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729385 vs. ExPASy Swiss-Prot
Match: UBP46_HUMAN (Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo sapiens GN=USP46 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.871e-25
Identity = 77/247 (31.17%), Postives = 126/247 (51.01%), Query Frame = 2
Query:   77 ILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCC------------LPSGVPSESA--NAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDK---KVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDEHRVVQVNERSV 766
            ++ PK  +S LR  +  F N  Q+DAHE++  LL ++                L +G  +E A  N  E + VH+IF G L ++ +C  C   S+K + FLDLS+++ +  S+   L +F+  E L   E++Y+C+ C  K  A K++ V K P +L +HLKRF+  +   +  K   +V F   L +    S +   D  Y L  V+VH G   + GHY   V+ S G W   D+  V +++ +++
Sbjct:   96 VIPPKKFISRLRKENDLFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETL-CSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVK-SHGFWLLFDDDIVEKIDAQAI 340          
BLAST of EY729385 vs. ExPASy Swiss-Prot
Match: UBP4_ARATH (Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana GN=UBP4 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.611e-24
Identity = 79/272 (29.04%), Postives = 139/272 (51.10%), Query Frame = 2
Query:   26 LCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFRNSRQEDAHE---YMVN-LLESMHKCCLPSGVPSESANAYEK-------------------SLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFVSGSYEG--DLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDEHRVVQVNERSV 766
            L  +   +S   + TG ++APK  V  L+  +  FR+   +DAHE   Y++N L+E + K    +   +E++++ EK                   + VHKIF G L ++ +C +C   + + + FLDLSL+I +  S+   L NF++ E L   E ++ C +C     A K++ + K P++L IHLKRF+  +   +  KK+ +     ++  +S + +   D++Y+L+ V+VH G   + GHY   V+ S   W   D+  V  + E +V
Sbjct:   70 LADLFSQISSQKKKTG-VIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNELVEILEKETQATKADNETSSSPEKIANVLKAPLANGVHKEPIVTWVHKIFQGILTNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLH-AEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRY-KKLSYRVVFPLELKLSNTVDEYVDIEYSLFAVVVHVGSGPNHGHYVSLVK-SHNHWLFFDDESVEIIEESAV 337          
BLAST of EY729385 vs. ExPASy Swiss-Prot
Match: UBP12_HUMAN (Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo sapiens GN=USP12 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.611e-24
Identity = 74/247 (29.96%), Postives = 126/247 (51.01%), Query Frame = 2
Query:   77 ILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCC------------LPSG-VPSESANAY-EKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDK---KVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDEHRVVQVNERSV 766
            ++ PK  ++ LR  +  F N  Q+DAHE++  LL ++                LP+G + +E+ N+  + + VH+IF G L ++ +C  C   S+K + FLDLS+++ +  S+   L  F+  E L   E +Y+C+ C+ K  A K++ V K P +L +HLKRF+  D   +  K   +V F   L +      +   D  Y L  V+VH G   + GHY   V+ S   W   D+  V +++ +++
Sbjct:  100 VIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETL-CSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAI 344          
BLAST of EY729385 vs. ExPASy Swiss-Prot
Match: UB12A_XENLA (Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xenopus laevis GN=usp12-A PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.611e-24
Identity = 74/247 (29.96%), Postives = 126/247 (51.01%), Query Frame = 2
Query:   77 ILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCC------------LPSG-VPSESAN-AYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDK---KVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDEHRVVQVNERSV 766
            ++ PK  ++ LR  +  F N  Q+DAHE++  LL ++                +P+G + +E+ N A + + VH+IF G L ++ +C  C   S+K + FLDLS+++ +  S+   L  F+  E L   E +Y+C+ C+ K  A K++ V K P +L +HLKRF+  D   +  K   +V F   L +      +   D  Y L  V+VH G   + GHY   V+ S   W   D+  V +++ +++
Sbjct:  100 VIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQNGRIPNGNIDNENNNSAPDPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETL-CSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAI 344          
BLAST of EY729385 vs. ExPASy Swiss-Prot
Match: UB12B_XENLA (Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xenopus laevis GN=usp12-B PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.597e-24
Identity = 73/247 (29.55%), Postives = 125/247 (50.61%), Query Frame = 2
Query:   77 ILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCC------------LPSG-VPSESAN-AYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDK---KVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDEHRVVQVNERSV 766
            ++ PK  ++ LR  +  F N  Q+DAHE++  LL ++                +P+G + +E+ N   + + VH+IF G L ++ +C  C   S+K + FLDLS+++ +  S+   L  F+  E L   E +Y+C+ C+ K  A K++ V K P +L +HLKRF+  D   +  K   +V F   L +      +   D  Y L  V+VH G   + GHY   V+ S   W   D+  V +++ +++
Sbjct:  100 VIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQNGRIPNGNIDNENNNNTPDPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETL-CSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAI 344          
BLAST of EY729385 vs. ExPASy Swiss-Prot
Match: UBP3_ARATH (Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana GN=UBP3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.922e-24
Identity = 79/275 (28.73%), Postives = 134/275 (48.73%), Query Frame = 2
Query:   26 LCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFRNSRQEDAHEYM-------VNLLESMHKCCLP------SGVPSESANAYEK-------------SLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFVSGSYE--GDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDEHRVVQVNERSV 766
            L  +   +S   + TG ++APK  V  L+  +  FR+   +DAHE++       V++LE   K          S  P + AN  +              + VH IF G L ++ +C +C   + + + FLDLSL+I +  S+   L NF++ E L   E ++ C +C     A K++ + K P++L IHLKRF+  +   +  KK+ +     ++  +S + E   D++Y+L+ V+VH G   + GHY   V+ S   W   D+  V  + E +V
Sbjct:   72 LADLFSQISSQKKKTG-VIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNEVVDILEKEAKATKTEHETSSSSSPEKIANGLKVPQANGVVHKEPIVTWVHNIFQGILTNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLH-AEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRY-KKLSYRVVFPLELKLSNTVEPYADVEYSLFAVVVHVGSGPNHGHYVSLVK-SHNHWLFFDDENVEMIEESAV 342          
BLAST of EY729385 vs. ExPASy Swiss-Prot
Match: UBP2_CHICK (Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.296e-23
Identity = 83/265 (31.32%), Postives = 124/265 (46.79%), Query Frame = 2
Query:   80 LAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCC----------------LPSGVPSESA----NAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKAD----SVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRF-RAHDPGQKNDKKVQFG-STLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTS-SGMWYSLDEHRVVQVNERSVLKQKATCCF 793
            ++P +  + ++  +  F    Q+DA E++  LL+ +H                   LP    S          E S V  +F G+L+S + C++C YCS  FDPF DLSL I K      +++  L  FT  ++LDG EK   C RCK + R  K+ ++ K P +L +HLKRF  A     K    V F    LD++ F S S    + Y LY V  H G +T  GHY  + ++  S  W+S ++ RV  ++   V    A   F
Sbjct:   86 VSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHGEVNRVLVRPRANADTLDHLPDDEKSRQMWRRYQEREDSRVSDLFVGQLKSSLTCSECGYCSTAFDPFWDLSLPIPKKGYGEVTLMDCLRLFTKEDVLDGDEKP-TCCRCKARTRCTKKFSIQKFPKILVLHLKRFSEARIRASKLTTFVNFPLKDLDLREFASQSCNHAV-YNLYAVSNHSG-TTMGGHYTAYCKSPISSEWHSFNDSRVTPMSSSHVRSSDAYLLF 347          
BLAST of EY729385 vs. ExPASy Swiss-Prot
Match: UBP2_MOUSE (Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.887e-23
Identity = 78/268 (29.10%), Postives = 127/268 (47.39%), Query Frame = 2
Query:   77 ILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHK-----CCLPSG-------VPSESANAY--------EKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKAD----SVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGS----TLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTS-SGMWYSLDEHRVVQVNERSVLKQKATCCF 793
            +++P +  + ++  +  F    Q+DA E++  LL+ +H         P         +P E             E S +  +F G+L+S + CT C YCS  FDPF DLSL IAK      +++  +  FT  ++LDG EK   C RC+ + R +K+ +V + P +L +HLKRF   +   +  K   F +     LD++ F S +      Y LY V  H G +T  GHY  + R+  +G W++ ++  V  ++   V    A   F
Sbjct:  341 VVSPSEFKTQIQRYAPRFMGYNQQDAQEFLRFLLDGLHNEVNRVAARPKASPETLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDILDGDEKP-TCCRCRARKRCIKKFSVQRFPKILVLHLKRF--SESRIRTSKLTTFVNFPLRDLDLREFASEN-TNHAVYNLYAVSNHSG-TTMGGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLF 603          
BLAST of EY729385 vs. ExPASy Swiss-Prot
Match: UBP12_MOUSE (Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus musculus GN=Usp12 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.887e-23
Identity = 74/247 (29.96%), Postives = 124/247 (50.20%), Query Frame = 2
Query:   77 ILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCC------------LPSG-VPSESANAY-EKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDK---KVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDEHRVVQVNERSV 766
            ++ PK  ++ LR  +  F N  Q+DAHE++  LL ++                L +G V +E  N+  + + VH+IF G L ++ +C  C   S+K + FLDLS+++ +  S+   L  F+  E L   E +Y+C+ C+ K  A K++ V K P +L +HLKRF+  D   +  K   +V F   L +      +   D  Y L  V+VH G   + GHY   V+ S   W   D+  V +++ +++
Sbjct:  100 VIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQNGRLRNGDVDNEDNNSTPDPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETL-CSEYKYYCEECRSKQEAHKRMKVKKLPLILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAI 344          
BLAST of EY729385 vs. ExPASy Swiss-Prot
Match: NOT_DROME (Ubiquitin carboxyl-terminal hydrolase nonstop OS=Drosophila melanogaster GN=not PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.887e-23
Identity = 76/290 (26.21%), Postives = 131/290 (45.17%), Query Frame = 2
Query:   20 CALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLP-------------SGVPSESANAYEKS-------LVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKA--------DSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDP--GQKNDKKVQFGSTLDMKPFVSGSYE--GDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDEHRVVQVNERSVLKQKATCCF 793
            C +C + +        +   L+   L+  +   +++     Q+DAHE+ +  L+ +H+ C+              SG  + S+N+           ++ +IF G L+S V C  C+  S  +DPF D+SL++ +          +++  L  +T AE L G   +  C  CK    + KQ ++   P V++ HLKRF  H     +K    +QF    DM PF+S      GD +++LY V+ H G +  +GHY  +VR     W   D+H +   + + VL  +    F
Sbjct:  440 CLVCEVSRLFQEFYSGSRSPLSLHRLLHLIWNHAKHLAGYEQQDAHEFFIATLDVLHRHCVKAKAEHESKSNSSGSGSGTNSSNSSSSHCYGQCNCIIDQIFTGMLQSDVVCQACNGVSTTYDPFWDISLDLGETTTHGGVTPKTLIDCLERYTRAEHL-GSAAKIKCSTCKSYQESTKQFSLRTLPSVVSFHLKRFE-HSALIDRKISSFIQFPVEFDMTPFMSEKKNAYGDFRFSLYAVVNHVG-TIDTGHYTAYVRHQKDTWVKCDDHVITMASLKQVLDSEGYLLF 726          
The following BLAST results are available for this feature:
BLAST of EY729385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
UBP46_HUMAN6.871e-2531.17Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo s... [more]
UBP4_ARATH2.611e-2429.04Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabido... [more]
UBP12_HUMAN2.611e-2429.96Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo s... [more]
UB12A_XENLA2.611e-2429.96Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xeno... [more]
UB12B_XENLA7.597e-2429.55Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xeno... [more]
UBP3_ARATH9.922e-2428.73Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabido... [more]
UBP2_CHICK1.296e-2331.32Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus ... [more]
UBP2_MOUSE2.887e-2329.10Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus mus... [more]
UBP12_MOUSE2.887e-2329.96Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus mu... [more]
NOT_DROME2.887e-2326.21Ubiquitin carboxyl-terminal hydrolase nonstop OS=D... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-016-C03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729385 ID=EY729385; Name=EY729385; organism=Citrus sinensis; type=EST; length=893bp
CACGCGTCCGGCTGGGTTCTGCGCCTTATGTGCCATCCAGAAACATGTTA
GTCGTGCTCTACAAGCAACTGGGAGAATATTAGCACCCAAGGATCTTGTC
TCAAACTTGCGCTGCATATCTCGAAACTTCCGAAATTCTAGACAAGAGGA
TGCACATGAGTATATGGTGAACTTGCTGGAATCAATGCATAAATGCTGCT
TACCTTCAGGAGTGCCAAGTGAATCTGCAAATGCCTATGAGAAGAGTTTG
GTACACAAGATCTTTGGTGGTCGTTTACGTAGTCAGGTCAAATGCACACA
ATGCTCTTACTGTTCCAACAAATTTGATCCCTTTCTAGATTTAAGTCTTG
AAATAGCCAAGGCAGATTCTGTCCTTAAAGCCCTCAACAACTTCACTGCT
GCAGAACTGTTAGATGGAGGGGAGAAGGAGTATCATTGCCAACGATGCAA
GCAGAAAGTTAGGGCTCTCAAGCAGCTCACGGTATACAAGGCACCTTATG
TGCTCACCATACACTTAAAAAGATTTCGTGCACATGATCCGGGACAGAAG
AATGACAAGAAAGTTCAGTTTGGTTCTACATTAGACATGAAACCTTTTGT
CAGTGGATCCTATGAAGGAGATTTGAAGTATACTCTTTATGGTGTTCTGG
TGCACCATGGTTGGAGCACCCATTCCGGCCACTATTACTGCTTTGTTCGT
ACATCCAGTGGCATGTGGTACTCCCTTGATGAACATCGGGTTGTCCAAGT
TAATGAGCGGTCCGTTCTAAAACAGAAGGCTACATGTTGTTTTATGTTCG
TGATCGAAAGATATTGTCCGAGAAAACCACTGACATGTTCAGAAGAAAAT
TGAAAGCTATGTTATGGAAATAAACATGTCTATTGGGAGCCAC
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