EY729382

Overview
NameEY729382
Unique NameEY729382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length517
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729382 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 7.516e-35
Identity = 72/139 (51.80%), Postives = 95/139 (68.35%), Query Frame = 3
Query:   90 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 506
            +K+G+NGFGRIGRLV R A   D V++VA+NDPFI  +YM YMF+YDS HG++ +  +K ++ K ++ G KP+ +F  R+P  I W   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFSCDKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of EY729382 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.516e-35
Identity = 72/142 (50.70%), Postives = 97/142 (68.31%), Query Frame = 3
Query:   90 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 515
            I +GINGFGRIGRLV R+AL R D+++VA+NDPFI+ +Y +YMFKYDS HG++   E+  + E  ++ G+K + V+  R+P  IPW K G +YV++STGVF                VVI+APS  APMFVVGVNE +Y P+
Sbjct:    3 ITVGINGFGRIGRLVLRIALSRKDIQIVAINDPFIAPEYASYMFKYDSTHGRYS-GEVSHEGENIVIDGKK-IRVYQERDPVNIPWGKDGVDYVIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKYTPD 142          
BLAST of EY729382 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 9.816e-35
Identity = 72/139 (51.80%), Postives = 96/139 (69.06%), Query Frame = 3
Query:   90 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 506
            +K+G+NGFGRIGRLV R A+    VE+VA+NDPFI  +YM YMF+YDS HG++ +  +K ++ K ++ G KP+ +F  R+P  I W + GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:    2 VKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of EY729382 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 9.816e-35
Identity = 79/141 (56.03%), Postives = 96/141 (68.09%), Query Frame = 3
Query:   93 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 515
            KIGINGFGRIGRLV R AL     ++VAVNDPFI+ +YM YMFKYDS HG +K  E+K++D   ++ G+K + VF    PE IPW+K GAEY+VESTGVFT               VVISAPS DAPMFV GVN ++Y  +
Sbjct:    2 KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFK-GEVKMEDGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVISAPSADAPMFVCGVNLEKYSKD 139          
BLAST of EY729382 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.816e-35
Identity = 76/143 (53.15%), Postives = 95/143 (66.43%), Query Frame = 3
Query:   87 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP---VAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 506
            K K+GINGFGRIGRLV R A+++D V++VAVNDPFI+ DYM YMFKYDS HG++K   +  +  K ++   K    ++V   ++P EIPW   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN   Y
Sbjct:    3 KPKVGINGFGRIGRLVLRAAVEKDTVDVVAVNDPFINIDYMVYMFKYDSTHGRFK-GSVSAEGGKLIVTNGKTTHHISVHNSKDPAEIPWGVDGAEYVVESTGVFTTTDKASAHLKGGAKKVIISAPSADAPMFVMGVNNDMY 144          
BLAST of EY729382 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.816e-35
Identity = 75/142 (52.82%), Postives = 94/142 (66.20%), Query Frame = 3
Query:   90 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 515
            +K+ INGFGRIGRLV R+ALQR  +E+VAVNDPFIS DY  YMFKYDS HG++K  E+       ++ G K +AVF  ++P  +PW K G + V++STGVF                VVI+APSK APMFVVGVNE +Y  E
Sbjct:    2 VKVAINGFGRIGRLVLRIALQRKALEVVAVNDPFISVDYAAYMFKYDSTHGRYK-GEVTTSGNDLVIDGHK-IAVFQEKDPANLPWGKLGVDIVIDSTGVFKELDSAQKHLDAGAKKVVITAPSKTAPMFVVGVNEDKYNGE 141          
BLAST of EY729382 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.282e-34
Identity = 77/142 (54.23%), Postives = 94/142 (66.20%), Query Frame = 3
Query:   90 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 515
            +K+GINGFGRIGR+V R A++ +DVE+VAVNDPFI   Y  YM KYDS HGQ+K  ++KV D   L    K V     ++P  IPW++TGA YVVESTGVFT               VVISAPS DAPMFV+GVN + YK +
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFK-GDIKV-DGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSADAPMFVMGVNHETYKSD 142          
BLAST of EY729382 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.282e-34
Identity = 75/142 (52.82%), Postives = 96/142 (67.61%), Query Frame = 3
Query:   90 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 515
            +K+GINGFGRIGR+V R A++  +VE+VAVNDPFI T Y  YM KYDS HG++K  ++K  D    + G K V  +  R+P  IPWA+TGA+YV+ESTGVFT               V+ISAPS DAPMFV+GVN + YK +
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFK-GDVKFSDNGLDVDG-KHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNETYKSD 142          
BLAST of EY729382 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.282e-34
Identity = 76/148 (51.35%), Postives = 94/148 (63.51%), Query Frame = 3
Query:   87 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK------PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 512
            K K+GINGFGRIGRL  R A+++D V++VA+NDPFI  DYM YMF YDS HG++     K+      L  EK       + VF  ++P EI WA+ GAEYV+ESTGVFT               VVISAPS DAPM+V+GVNE +Y P
Sbjct:    3 KPKVGINGFGRIGRLALRAAVEKDTVQVVAINDPFIELDYMVYMFNYDSTHGRFNG---KISTSAGNLVVEKEGKATHTIKVFNLKDPAEIKWAEVGAEYVIESTGVFTTIEKASAHLKGGAKKVVISAPSADAPMYVMGVNEDKYDP 147          
BLAST of EY729382 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.187e-34
Identity = 76/139 (54.68%), Postives = 91/139 (65.47%), Query Frame = 3
Query:   90 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 506
            IK+GINGFGRIGR+V R A++  DVE+VAVNDPFI T Y  YM KYDS HG +  N    +D   L+   K V  +  R+P  IPW +TGA+YVVESTGVFT               V+ISAPS DAPM+V+GVNEK Y
Sbjct:    4 IKVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIETKYAAYMLKYDSTHGIF--NGEIAQDGNDLVINGKKVKFYTERDPAVIPWKETGADYVVESTGVFTTIDKAKAHLQGGAKKVIISAPSADAPMYVMGVNEKSY 140          
The following BLAST results are available for this feature:
BLAST of EY729382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 291
Match NameE-valueIdentityDescription
G3P_RAT7.516e-3551.80Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_PICCI7.516e-3550.70Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_MOUSE9.816e-3551.80Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_HOMAM9.816e-3556.03Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_BRUMA9.816e-3553.15Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3P1_KLULA9.816e-3552.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_CURLU1.282e-3454.23Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_COCIM1.282e-3452.82Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P1_GLORO1.282e-3451.35Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P_COLLN2.187e-3454.68Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-016-B12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729382 ID=EY729382; Name=EY729382; organism=Citrus sinensis; type=EST; length=517bp
CCACGCGTCCGCCCAGCGAAAATCGCAGCGTTAAACAAACCTTCACTACT
TTCTCATTTTCGATAATATCAATGGCCGGAGACAAGAAGATCAAGATCGG
AATCAACGGTTTCGGAAGGATCGGCCGTTTGGTTGCGAGAGTCGCACTCC
AGAGGGATGATGTGGAGCTGGTGGCTGTCAACGATCCTTTCATCTCCACT
GATTACATGACATACATGTTTAAGTACGATAGTGTTCACGGTCAGTGGAA
GCACAACGAGTTGAAGGTCAAGGACGAGAAGACCCTCCTCTTCGGTGAGA
AGCCAGTCGCTGTTTTCGGATTCAGGAACCCAGAGGAGATCCCATGGGCA
AAGACTGGAGCCGAGTATGTTGTGGAATCAACTGGAGTGTTCACTGACAA
GGACAAGGCTGCTGCTCACTTGAAGGGTGGTGCCAAGAAGGTCGTTATCT
CCGCCCCTAGCAAGGATGCTCCCATGTTTGTTGTGGGCGTCAACGAGAAA
GAATACAAGCCAGAGCT
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