EY729380

Overview
NameEY729380
Unique NameEY729380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729380 vs. ExPASy Swiss-Prot
Match: RNPH_ECOBW (Ribonuclease PH OS=Escherichia coli (strain K12 / BW2952) GN=rph PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.287e-34
Identity = 79/124 (63.71%), Postives = 95/124 (76.61%), Query Frame = 1
Query:    1 CDVIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAALAD 372
            CDV+QADGGTRTASITGA VALVDAL+ + + G LK  +P+K M+AAVSVG+  GE V DL+Y+EDSAAETD+NVVMT  G  IEVQGTAEG PF   +L  +LALA+ G+  I   Q AALA+
Sbjct:  116 CDVLQADGGTRTASITGACVALVDALQKLVENGKLKT-NPMKGMVAAVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQKAALAN 238          
BLAST of EY729380 vs. ExPASy Swiss-Prot
Match: RNPH_BURTA (Ribonuclease PH OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rph PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.287e-34
Identity = 75/122 (61.48%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    1 CDVIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAAL 366
            CDVIQADGGTRTASITGA VA  DA+  +   G +    P+   +AA+SVG++ G PVLDLDY EDSA +TD+NVVMT  GGF+EVQGTAEG PF  A++NA+L LAQ G+ E+  LQ AAL
Sbjct:  121 CDVIQADGGTRTASITGAFVAAHDAVTKLVAAGKI-ARSPITDYVAAISVGVFGGAPVLDLDYDEDSACDTDMNVVMTGAGGFVEVQGTAEGVPFSRAEMNALLDLAQAGIGELVRLQRAAL 241          
BLAST of EY729380 vs. ExPASy Swiss-Prot
Match: RNPH_BURPS (Ribonuclease PH OS=Burkholderia pseudomallei GN=rph PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.287e-34
Identity = 75/122 (61.48%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    1 CDVIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAAL 366
            CDVIQADGGTRTASITGA VA  DA+  +   G +    P+   +AA+SVG++ G PVLDLDY EDSA +TD+NVVMT  GGF+EVQGTAEGAPF   ++NA+L LAQ G+ E+  LQ AAL
Sbjct:  121 CDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRI-ARSPITDYVAAISVGVFGGTPVLDLDYDEDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAAL 241          
BLAST of EY729380 vs. ExPASy Swiss-Prot
Match: RNPH_BURP0 (Ribonuclease PH OS=Burkholderia pseudomallei (strain 1106a) GN=rph PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.287e-34
Identity = 75/122 (61.48%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    1 CDVIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAAL 366
            CDVIQADGGTRTASITGA VA  DA+  +   G +    P+   +AA+SVG++ G PVLDLDY EDSA +TD+NVVMT  GGF+EVQGTAEGAPF   ++NA+L LAQ G+ E+  LQ AAL
Sbjct:  121 CDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRI-ARSPITDYVAAISVGVFGGTPVLDLDYDEDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAAL 241          
BLAST of EY729380 vs. ExPASy Swiss-Prot
Match: RNPH_BURMA (Ribonuclease PH OS=Burkholderia mallei GN=rph PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.287e-34
Identity = 75/122 (61.48%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    1 CDVIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAAL 366
            CDVIQADGGTRTASITGA VA  DA+  +   G +    P+   +AA+SVG++ G PVLDLDY EDSA +TD+NVVMT  GGF+EVQGTAEGAPF   ++NA+L LAQ G+ E+  LQ AAL
Sbjct:  121 CDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRI-ARSPITDYVAAISVGVFGGTPVLDLDYDEDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAAL 241          
BLAST of EY729380 vs. ExPASy Swiss-Prot
Match: RNPH_BURM9 (Ribonuclease PH OS=Burkholderia mallei (strain NCTC 10229) GN=rph PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.287e-34
Identity = 75/122 (61.48%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    1 CDVIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAAL 366
            CDVIQADGGTRTASITGA VA  DA+  +   G +    P+   +AA+SVG++ G PVLDLDY EDSA +TD+NVVMT  GGF+EVQGTAEGAPF   ++NA+L LAQ G+ E+  LQ AAL
Sbjct:  121 CDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRI-ARSPITDYVAAISVGVFGGTPVLDLDYDEDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAAL 241          
BLAST of EY729380 vs. ExPASy Swiss-Prot
Match: RNPH_BURM7 (Ribonuclease PH OS=Burkholderia mallei (strain NCTC 10247) GN=rph PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.287e-34
Identity = 75/122 (61.48%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    1 CDVIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAAL 366
            CDVIQADGGTRTASITGA VA  DA+  +   G +    P+   +AA+SVG++ G PVLDLDY EDSA +TD+NVVMT  GGF+EVQGTAEGAPF   ++NA+L LAQ G+ E+  LQ AAL
Sbjct:  121 CDVIQADGGTRTASITGAFVAAHDAVTKLVAAGRI-ARSPITDYVAAISVGVFGGTPVLDLDYDEDSACDTDMNVVMTGAGGFVEVQGTAEGAPFSRTEMNALLDLAQAGIGELVRLQRAAL 241          
BLAST of EY729380 vs. ExPASy Swiss-Prot
Match: RNPH_ALISL (Ribonuclease PH OS=Aliivibrio salmonicida (strain LFI1238) GN=rph PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.287e-34
Identity = 79/124 (63.71%), Postives = 95/124 (76.61%), Query Frame = 1
Query:    1 CDVIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAALAD 372
            CDVIQADGGTRTASITGA VAL DA+  +   G LK  +P+K  +AAVSVG+Y+GE + DL+YLEDSAA+TD+NVVM   G  IEVQGTAE APF   +L  MLALAQ+G+ +I E Q AALA+
Sbjct:  116 CDVIQADGGTRTASITGASVALADAINHMIASGKLKK-NPMKGHVAAVSVGIYKGEAICDLEYLEDSAADTDMNVVMMEDGKMIEVQGTAEVAPFSHQELLDMLALAQQGINDIIEKQKAALAE 238          
BLAST of EY729380 vs. ExPASy Swiss-Prot
Match: RNPH_VIBF1 (Ribonuclease PH OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rph PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.293e-34
Identity = 78/124 (62.90%), Postives = 94/124 (75.81%), Query Frame = 1
Query:    1 CDVIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAALAD 372
            CDVIQADGGTRTASITGA VAL DA+  +   G LK  +P+K  +AAVSVG+Y GE + DL+Y+EDSAA+TD+NVVM   G  IEVQGTAE APF   +L  MLALAQ+G+ +I E Q AALA+
Sbjct:  116 CDVIQADGGTRTASITGASVALADAINHMIATGKLKS-NPMKGHVAAVSVGIYNGEAICDLEYVEDSAADTDMNVVMMEDGKMIEVQGTAEEAPFSHQELLDMLALAQQGINDIIEKQKAALAE 238          
BLAST of EY729380 vs. ExPASy Swiss-Prot
Match: RNPH_RALEH (Ribonuclease PH OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rph PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.293e-34
Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    1 CDVIQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAAL 366
            CDV+QADGGTRTA+ITGA VA  DA+  +  R GL    P++  +AAVSVGM  G PVLDLDY EDS+ +TD+NVVMT +GGF+EVQGTAEGAPF  ADL+AM  LA+ G+  + + Q  AL
Sbjct:  116 CDVLQADGGTRTAAITGAFVAAHDAVSTML-RDGLIAASPIRDHVAAVSVGMVDGVPVLDLDYAEDSSCDTDMNVVMTGSGGFVEVQGTAEGAPFSRADLDAMTRLAEAGIARLVQHQREAL 236          
The following BLAST results are available for this feature:
BLAST of EY729380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
RNPH_ECOBW3.287e-3463.71Ribonuclease PH OS=Escherichia coli (strain K12 / ... [more]
RNPH_BURTA3.287e-3461.48Ribonuclease PH OS=Burkholderia thailandensis (str... [more]
RNPH_BURPS3.287e-3461.48Ribonuclease PH OS=Burkholderia pseudomallei GN=rp... [more]
RNPH_BURP03.287e-3461.48Ribonuclease PH OS=Burkholderia pseudomallei (stra... [more]
RNPH_BURMA3.287e-3461.48Ribonuclease PH OS=Burkholderia mallei GN=rph PE=3... [more]
RNPH_BURM93.287e-3461.48Ribonuclease PH OS=Burkholderia mallei (strain NCT... [more]
RNPH_BURM73.287e-3461.48Ribonuclease PH OS=Burkholderia mallei (strain NCT... [more]
RNPH_ALISL3.287e-3463.71Ribonuclease PH OS=Aliivibrio salmonicida (strain ... [more]
RNPH_VIBF14.293e-3462.90Ribonuclease PH OS=Vibrio fischeri (strain ATCC 70... [more]
RNPH_RALEH4.293e-3460.66Ribonuclease PH OS=Ralstonia eutropha (strain ATCC... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-016-B10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729380 ID=EY729380; Name=EY729380; organism=Citrus sinensis; type=EST; length=834bp
TGCGACGTGATCCAGGCTGACGGTGGCACTCGCACGGCGTCCATCACCGG
CGCTATGGTTGCCCTGGTCGATGCGCTCAAAGTCATCAAGAAGCGTGGCG
GCCTGAAAGGCGGCGATCCGCTCAAGCAGATGATCGCGGCTGTATCGGTA
GGCATGTATCAGGGCGAGCCAGTGCTGGATCTGGACTATCTTGAAGATTC
GGCTGCCGAGACCGACCTGAACGTGGTGATGACCAGCACCGGTGGTTTCA
TCGAAGTGCAGGGCACCGCCGAAGGCGCGCCATTCCAGCCGGCGGACCTG
AATGCCATGCTGGCATTGGCCCAGAAAGGCATGACCGAGATCTTCGAACT
GCAGAACGCCGCCCTGGCCGACTGATTCAACCCCAAGGAGCTACGCCATG
AGTGACAGTCAACTTCCGCTGCCGACACCGTCCAAGGAAGTTCGCCAGTG
GGCGATGCTCTGTCACTTCGCGGCGTTTTTCGGCTTGATGTTCCCGTTCG
GCAGCCTGCTGGGGCCTTTGATTCTCTGGCAGGTGAAGAAGGATACGGAC
CCGTTCATTGATGATCAGGGCAAGGAAGCGCTGAATTTCCAGATCACCGT
GGGCATTGCCTGGGCGGTCTGCTTCCTGCTGGGTTTTATCGTGATCGGCT
TCGTGTTGATGACCGTCCTGGTGATCGGCGCCGTGGTGATGACGATCATT
GGGGGCATCAAGCCCACAAGGGCGTGGCTTATCGTTATCCGTGGACGTTG
CGGTTGATCAAATAACACCCGCCCACAAAAAACGACAGNGATGTCGGTTT
TTTTGTGCCCGGGAAAAAACCTAAAATGGCATGT
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