EY729351

Overview
NameEY729351
Unique NameEY729351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_BORA1 (Glutaminyl-tRNA synthetase OS=Bordetella avium (strain 197N) GN=glnS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.948e-12
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELD-DWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSF 359
            K KG + WV+      + +  EVRL+++LF   +P   D D+L+ LNP+S   + +A+ EP    A  G  +QFERLGYF VD KDS+PE  V NR VTLKDS+
Sbjct:  487 KVKGNITWVS----AAHAVPAEVRLYDRLFADPHPDGGDKDFLACLNPNSIQTV-QAWLEPGTR-AEPGATWQFERLGYFTVDSKDSSPEAPVLNRIVTLKDSW 584          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_HAEDU (Glutaminyl-tRNA synthetase OS=Haemophilus ducreyi GN=glnS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.850e-12
Identity = 38/103 (36.89%), Postives = 62/103 (60.19%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSF 359
            K KGV+HWV+     V     E R++ +LFN  NP + +D  + +NP S +++   + E +L +A     +QFER GY+ +D K+ + + L+FN TV+LK+ F
Sbjct:  457 KVKGVIHWVSATQNKV----AEFRIYNRLFNVANPGDEEDINAVINP-SSLIVKHGFVEVNLANAQKEQGYQFEREGYYCLDSKEGSADNLIFNLTVSLKEGF 554          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_BORPE (Glutaminyl-tRNA synthetase OS=Bordetella pertussis GN=glnS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.850e-12
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELD-DWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSF 359
            K KG + WV+      + +  +V L+++LF   +P   D D+L+ LNP+SK  + +A+ EP +  A  G  +QFERLGYF VD KDS PE  V NR VTL+DS+
Sbjct:  487 KVKGNITWVS----AAHAVPAQVHLYDRLFADAHPDGGDKDFLACLNPNSKQTV-QAWLEPGIE-AVPGATWQFERLGYFTVDSKDSRPEAPVLNRIVTLRDSW 584          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_BORPA (Glutaminyl-tRNA synthetase OS=Bordetella parapertussis GN=glnS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.850e-12
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELD-DWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSF 359
            K KG + WV+      + +  +V L+++LF   +P   D D+L+ LNP+SK  + +A+ EP +  A  G  +QFERLGYF VD KDS PE  V NR VTL+DS+
Sbjct:  487 KVKGNITWVS----AAHAVPAQVHLYDRLFADAHPDGGDKDFLACLNPNSKQTV-QAWLEPGIE-AVPGATWQFERLGYFTVDSKDSRPEAPVLNRIVTLRDSW 584          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_HAMD5 (Glutaminyl-tRNA synthetase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=glnS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLK 350
            K +GV+HWV+      + +  E+RL+  L  + + A+   +L   NP+S + I + + EPSL +   G  +QFER GYF  DKDS+ + LVFNRTV+L+
Sbjct:  452 KIRGVIHWVSAD----DAVPAEIRLYHHLLTASH-ADTCLFLEAFNPES-LFIRQGFVEPSLANTQEGKTYQFEREGYFCTDKDSSEKHLVFNRTVSLR 544          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_BORBR (Glutaminyl-tRNA synthetase OS=Bordetella bronchiseptica GN=glnS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.567e-12
Identity = 46/104 (44.23%), Postives = 64/104 (61.54%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELD-DWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSF 359
            K KG + WV+      + +  +V L+++LF   +P   D D+L+ LNP SK  + +A+ EP +  A  G  +QFERLGYF VD KDS PE  V NR VTL+DS+
Sbjct:  487 KVKGNITWVS----AAHAVPAQVHLYDRLFADAHPDGGDKDFLACLNPHSKQTV-QAWLEPGIE-AVPGATWQFERLGYFTVDSKDSRPEAPVLNRIVTLRDSW 584          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_NITHX (Glutaminyl-tRNA synthetase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=glnS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPK 365
            K K  +HWV+        +  E+RL+  LF +  P +  ++ S+LNP S   +     EP+L         QFER GYF  D+DS+P +LVFNRTV L+D++ K
Sbjct:  455 KVKATMHWVS----AAEAVPAEIRLYGHLFATAQP-DAANFASELNPQSLETL-SGMVEPALARDDTDGAVQFERQGYFCRDRDSSPGRLVFNRTVGLRDTWAK 552          
The following BLAST results are available for this feature:
BLAST of EY729351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
SYQ_BORA12.948e-1246.15Glutaminyl-tRNA synthetase OS=Bordetella avium (st... [more]
SYQ_HAEDU3.850e-1236.89Glutaminyl-tRNA synthetase OS=Haemophilus ducreyi ... [more]
SYQ_BORPE3.850e-1244.23Glutaminyl-tRNA synthetase OS=Bordetella pertussis... [more]
SYQ_BORPA3.850e-1244.23Glutaminyl-tRNA synthetase OS=Bordetella parapertu... [more]
SYQ_HAMD55.028e-1240.40Glutaminyl-tRNA synthetase OS=Hamiltonella defensa... [more]
SYQ_BORBR6.567e-1244.23Glutaminyl-tRNA synthetase OS=Bordetella bronchise... [more]
SYQ_NITHX2.495e-1138.46Glutaminyl-tRNA synthetase OS=Nitrobacter hamburge... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-G07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729351 ID=EY729351; Name=EY729351; organism=Citrus sinensis; type=EST; length=567bp
CCACGCGTCCGATTCTTCACATTCCGGGCTGAATATGATCCTTCCAAAAA
GACAAACCAAAGGGAGTTCTTCACTGGGTTGCTGAGCCTTCCCCTGGTGT
CAATCCACTAAGGGTGGAAGTCAGATTGTTTGAAAAATTGTTCAACTCTG
AGAATCCTGCAGAACTTGATGATTGGCTTTCTGATTTGAATCCGGATTCC
AAAGTGGTGATTCCTGAAGCATATGCAGAACCATCACTTCACAGTGCTGC
TGTCGGGGACAGATTCCAATTTGAAAGGCTAGGGTACTTTGCAGTTGATA
AGGATTCCACTCCGGAGAAACTTGTTTTCAACCGGACAGTCACACTAAAA
GATAGCTTTCCCAAAGGTGGGAAGTAGGAAGTAGGACCCTTGCAAATGGA
AAACAGATGGAGCATTAGATGGGCTATTACTATGAGCTGCTTCTTACTTG
TTATGAAAATTTTATACCTGTGTAAAAATATCATTCACTAAATCTTGCAA
GATATTTTAGGTTATAATTGAAGTTTTGCTTGATACTANNNNNAAAAAAA
AAAAAAAAAAAAAAAAA
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