EY729342

Overview
NameEY729342
Unique NameEY729342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729342 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 4.464e-16
Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  309 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRXPVFLDWEVNEQLTKVKSEISEGSTILK 710
            +T+++ L NG+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++     + E+  +   +  E+ E  T L+
Sbjct:   57 ETQVTCLENGLRVASENSGISTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQ 190          
BLAST of EY729342 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.464e-16
Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  309 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRXPVFLDWEVNEQLTKVKSEISEGSTILK 710
            +T+++ L NG+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++     + E+  +   +  E+ E  T L+
Sbjct:   57 ETQVTCLENGLRVASENSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSRDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQ 190          
BLAST of EY729342 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.464e-16
Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  309 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRXPVFLDWEVNEQLTKVKSEISEGSTILK 710
            +T+++ L NG+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++     + E+  +   +  E+ E  T L+
Sbjct:   58 ETRVTCLENGLRVASEDSGLATCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQ 191          
BLAST of EY729342 vs. ExPASy Swiss-Prot
Match: QCR2_BOVIN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Bos taurus GN=UQCRC2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.614e-16
Identity = 41/117 (35.04%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  303 PGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRXPVFLDWEV 653
            P   + + LPNG+ IAS  + +P + I L++  GS YE+  + GT+HLL   +  +T+  S  +I R +EA+GG +  +++RE M Y+ + L+  V  ++E L++    P F  WEV
Sbjct:   35 PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEV 151          
BLAST of EY729342 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.299e-15
Identity = 42/134 (31.34%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  309 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRXPVFLDWEVNEQLTKVKSEISEGSTILK 710
            +T++S L NG+++ASE S     ++ +++  GS YE+  + G  + LE +AF+ T+NR    + +EVE+IG ++ A ++RE   Y   AL   +P++VELL D V+     D ++ ++   +  E+ E    ++
Sbjct:   47 ETQVSILDNGLRVASEQSSHATCTVGVWIDAGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNSSLEDSQIEKERDVILREMQENDASMQ 180          
BLAST of EY729342 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.696e-15
Identity = 44/134 (32.84%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  309 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRXPVFLDWEVNEQLTKVKSEISEGSTILK 710
            +T+++ L +G+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++     + E+  +   +  E+ E  T L+
Sbjct:   57 ETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQ 190          
BLAST of EY729342 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.696e-15
Identity = 44/134 (32.84%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  309 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRXPVFLDWEVNEQLTKVKSEISEGSTILK 710
            +T+++ L +G+++ASE S     ++ L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++     + E+  +   +  E+ E  T L+
Sbjct:   57 ETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQ 190          
BLAST of EY729342 vs. ExPASy Swiss-Prot
Match: MPPA_YEAST (Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae GN=MAS2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.696e-15
Identity = 42/126 (33.33%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  315 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRXPVFLDWEVNEQLTKVKSEISE 692
            K+S+L NG+K+A+  +    +++ LY+  GS +E     G TH+L+R+AF+ST +     +   +E +GGN Q ++SRE + Y        V +M++L+ + VR P   + E+ EQ    + EI E
Sbjct:   20 KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDE 145          
BLAST of EY729342 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.215e-15
Identity = 45/126 (35.71%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  309 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR-SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRXPVFLDWEVNEQLTKVKSE 683
            +TKI+TL NG+++A+E +   VAS+ ++V  GS+YE+  + G  H LE M F+ T  R +   I  E+E +GG++ A  SRE   Y    LK  VP  V++L D ++   F    + ++   + SE
Sbjct:   34 ETKITTLSNGIRVATEQTYGEVASVGVWVDSGSVYETDKNNGVAHFLEHMIFKGTAKRPTPQSIETEIENMGGSLNAFTSREHSAYYMKVLKDNVPNAVDILSDILQNSKFETSLIEQERDTILSE 159          
BLAST of EY729342 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.893e-15
Identity = 42/129 (32.56%), Postives = 78/129 (60.47%), Query Frame = 3
Query:  309 KTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRXPVFLDWEVNEQLTKVKSEISE 692
            +T+++TLPNG+++A+E+++S   A++ +++  GS +ES  + GT H LE M F+ T  R+   +  E+E IGG++ A  SREQ  Y    L + V + +++L D ++   F +  +N +   +  E+ E
Sbjct:   96 ETRVTTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRALEEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRINRERDVILREMQE 224          
The following BLAST results are available for this feature:
BLAST of EY729342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
MPPB_RAT4.464e-1633.58Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_MOUSE4.464e-1633.58Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BOVIN4.464e-1633.58Mitochondrial-processing peptidase subunit beta OS... [more]
QCR2_BOVIN7.614e-1635.04Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR1_MOUSE1.299e-1531.34Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_PONAB1.696e-1532.84Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN1.696e-1532.84Mitochondrial-processing peptidase subunit beta OS... [more]
MPPA_YEAST1.696e-1533.33Mitochondrial-processing peptidase subunit alpha O... [more]
MPPB_DICDI2.215e-1535.71Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_ARATH2.893e-1532.56Probable mitochondrial-processing peptidase subuni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-F10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729342 ID=EY729342; Name=EY729342; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGGCCAGTCTTCAACACTTGTCCCGTTCAAATTAGGGTTTT
GGAGAATTGACTATCAAATCAATCAGCATGTACAGAAACGCAGCCTCTCG
TCTTCGAGCCCTCAAGGGCCATGTGCGTTGTAGGGTGCCTTCAGCCACAA
GATTTGCAAGTTCCAGTGCCGTTGCTTCAACTTCATCCTCTTCGGGTGGT
CTCTTTAGCTGGTTGACTGGGGAACGGTCCAGTTCTTCACCTTCTCTGGA
CTTTCCACTTCCGGGTGTCTCTCTTCCACCTTCATTGCCTGATTATGTTG
AACCTGGTAAAACCAAGATTTCTACTCTACCAAATGGTGTCAAAATTGCC
TCGGAAACATCAGTGAGTCCTGTAGCCTCAATATCGTTATATGTTGGTTG
TGGTTCAATTTATGAGTCACCAATCTCATTTGGGACAACACACTTGCTTG
AGCGTATGGCTTTTAGAAGTACAAGAAATAGGAGTCACTTGCGTATTGTG
CGAGAAGTGGAGGCAATTGGTGGCAATGTCCAAGCCTCAGCTTCTAGGGA
GCAGATGGGTTACTCCTTTGATGCTTTGAAAACTTATGTTCCTGAAATGG
TAGAGCTTCTTATTGACTGTGTGAGANNACCTGTTTTTCTGGATTGGGAG
GTCAACGAACAGCTCACAAAGGTGAAATCTGAGATTAGTGAGGGTTCAAC
AATCCTCAAANCTTGCTTTTGGAGGCAATCACTCAGCTGGTTACTCTGTG
CATTGGCTCATCTCTTCTACCCCCGGATCTGCTATAATAGATTAACTCTA
CCTTCTCGAAGAATTGTTGTGAAAATAATATGGTCTCGGATGGTATTGCT
GCTTCTGTGTGGAAATGACAGTTGGTGTTGGTACAGACCCCTTTA
back to top