EY729342

Overview
NameEY729342
Unique NameEY729342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729342 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 3.779e-15
Identity = 41/134 (30.60%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  309 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRXPVFLDWEVNEQLTKVKSEISEGSTILK 710
            +T++S L NG+++ASE S  P  ++ +++  GS +E+  + G  + LE +AF+ T+NR    + +EVE++G ++ A ++RE   Y   AL   +P+ VELL D V+     D ++ ++   +  E+ E    ++
Sbjct:   47 ETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQENDASMR 180          
BLAST of EY729342 vs. ExPASy Swiss-Prot
Match: MPPA_BLAEM (Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.457e-14
Identity = 38/127 (29.92%), Postives = 71/127 (55.91%), Query Frame = 3
Query:  312 TKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRXPVFLDWEVNEQLTKVKSEISE 692
            T ++ LP+G+++A+  S S  A++ +YV  G IYE+ I  G +H +  +AF+ST   +  ++++ +  +GGN+  +A+RE + Y    L   +P  V+LL D    P   + E+ E+   +  E  +
Sbjct:   15 TCMTRLPSGIRVATAPSNSHFAAVGVYVDAGPIYETSIDRGVSHFVSSLAFKSTHGATESQVLKTMAGLGGNLFCTATRESILYQGSVLHHDLPRTVQLLADTTLRPALTEEEIAERRATIAFEAED 141          
BLAST of EY729342 vs. ExPASy Swiss-Prot
Match: MPPB_YEAST (Mitochondrial-processing peptidase subunit beta OS=Saccharomyces cerevisiae GN=MAS1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.712e-12
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = 3
Query:  303 PGKTKISTLPNGVKIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRXPV 635
            PG T+ S LPNG+ IA+E    +  A++ ++V  GS  E+  + GT H LE +AF+ T+NRS   I  E+E IG ++ A  SRE   Y   +L+  +P+ V++L D +   V
Sbjct:   24 PG-TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRSQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSV 134          
BLAST of EY729342 vs. ExPASy Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  312 TKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVR 626
            T+ISTL NG+ +A+E+   +  A++ +++  GS  E+  + GT H LE MAF+ T  RS   +  EVE IG ++ A  SREQ  Y   +    VP  V+++ D ++
Sbjct:   29 TEISTLSNGLTVATESQPHAQTATVGVWIDAGSRAETDKTNGTAHFLEHMAFKGTGRRSQHALELEVENIGAHLNAYTSREQTVYYAKSFSKDVPVAVDIISDILQ 134          
The following BLAST results are available for this feature:
BLAST of EY729342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
QCR1_HUMAN3.779e-1530.60Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPA_BLAEM5.457e-1429.92Mitochondrial-processing peptidase subunit alpha O... [more]
MPPB_YEAST8.712e-1238.39Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_LENED5.647e-1136.79Mitochondrial-processing peptidase subunit beta OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-F10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729342 ID=EY729342; Name=EY729342; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGGCCAGTCTTCAACACTTGTCCCGTTCAAATTAGGGTTTT
GGAGAATTGACTATCAAATCAATCAGCATGTACAGAAACGCAGCCTCTCG
TCTTCGAGCCCTCAAGGGCCATGTGCGTTGTAGGGTGCCTTCAGCCACAA
GATTTGCAAGTTCCAGTGCCGTTGCTTCAACTTCATCCTCTTCGGGTGGT
CTCTTTAGCTGGTTGACTGGGGAACGGTCCAGTTCTTCACCTTCTCTGGA
CTTTCCACTTCCGGGTGTCTCTCTTCCACCTTCATTGCCTGATTATGTTG
AACCTGGTAAAACCAAGATTTCTACTCTACCAAATGGTGTCAAAATTGCC
TCGGAAACATCAGTGAGTCCTGTAGCCTCAATATCGTTATATGTTGGTTG
TGGTTCAATTTATGAGTCACCAATCTCATTTGGGACAACACACTTGCTTG
AGCGTATGGCTTTTAGAAGTACAAGAAATAGGAGTCACTTGCGTATTGTG
CGAGAAGTGGAGGCAATTGGTGGCAATGTCCAAGCCTCAGCTTCTAGGGA
GCAGATGGGTTACTCCTTTGATGCTTTGAAAACTTATGTTCCTGAAATGG
TAGAGCTTCTTATTGACTGTGTGAGANNACCTGTTTTTCTGGATTGGGAG
GTCAACGAACAGCTCACAAAGGTGAAATCTGAGATTAGTGAGGGTTCAAC
AATCCTCAAANCTTGCTTTTGGAGGCAATCACTCAGCTGGTTACTCTGTG
CATTGGCTCATCTCTTCTACCCCCGGATCTGCTATAATAGATTAACTCTA
CCTTCTCGAAGAATTGTTGTGAAAATAATATGGTCTCGGATGGTATTGCT
GCTTCTGTGTGGAAATGACAGTTGGTGTTGGTACAGACCCCTTTA
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