EY729297

Overview
NameEY729297
Unique NameEY729297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: MURR_ECO5E (HTH-type transcriptional regulator murR OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=murR PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.585e-16
Identity = 57/199 (28.64%), Postives = 95/199 (47.74%), Query Frame = -2
Query:   25 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAG-------ASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITL 600
            +E K+AD +  + +  +       A  +GIS+ +IV+F + +G  GF +L++ L    +A        A     +I  DDS+   + K+       L +     D   LQK +  +S+A  ++  G G S  V  D   K  ++    A  +D H+QA  +  LK  DV I IS SG  K++++ A   R+ GAT+I +
Sbjct:   17 NEQKIADFLRANVSELKSVSSRKMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATAQHLHSSITSDDSLEVIARKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGCDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAI 215          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: MURR_ECO57 (HTH-type transcriptional regulator murR OS=Escherichia coli O157:H7 GN=murR PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.585e-16
Identity = 57/199 (28.64%), Postives = 95/199 (47.74%), Query Frame = -2
Query:   25 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAG-------ASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITL 600
            +E K+AD +  + +  +       A  +GIS+ +IV+F + +G  GF +L++ L    +A        A     +I  DDS+   + K+       L +     D   LQK +  +S+A  ++  G G S  V  D   K  ++    A  +D H+QA  +  LK  DV I IS SG  K++++ A   R+ GAT+I +
Sbjct:   17 NEQKIADFLRANVSELKSVSSRKMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATAQHLHSSITSDDSLEVIARKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGCDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAI 215          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: MURR_ECOLU (HTH-type transcriptional regulator murR OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=murR PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.070e-16
Identity = 58/199 (29.15%), Postives = 96/199 (48.24%), Query Frame = -2
Query:   25 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAG-------ASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITL 600
            +E K+AD +  + +  +       A  +GIS+ +IV+F + +G  GF +L++ L    +A        A     +I  DDS+   + K+       L +     D   LQK + A+S+A  ++  G G S  V  D   K  ++    A  +D H+QA  +  LK  DV I IS SG  K++++ A   R+ GAT+I +
Sbjct:   17 NEQKIADFLRANVSELKSVSSRKMAKLLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCALFDYARLQKIIEAISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAI 215          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: MURR_ECOLC (HTH-type transcriptional regulator murR OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=murR PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.704e-16
Identity = 57/199 (28.64%), Postives = 95/199 (47.74%), Query Frame = -2
Query:   25 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGAS-FGQFAIH------EDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITL 600
            +E K+AD +  + +  +       A  +GIS+ +IV+F + +G  GF +L++ L    +A        A+H       DDS+   + K+       L +     D   LQK +  +S+A  ++  G G S  V  D   K  ++    A  +D H+QA  +  LK  DV I IS SG  K++++ A   R+ GAT+I +
Sbjct:   17 NEQKIADFLRANVSELQSVSSRQMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNAMALHLHSSITSDDSLEVIARKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAI 215          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: MURR_ECO7I (HTH-type transcriptional regulator murR OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=murR PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.704e-16
Identity = 56/199 (28.14%), Postives = 95/199 (47.74%), Query Frame = -2
Query:   25 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAG-------ASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITL 600
            +E K+AD +  + +  +       A  +GIS+ +IV+F + +G  GF +L++ L    +A        A     +I  DDS+   + K+       L +     D   LQK +  +S+A  ++  G G S  V  D   K  ++       +D H+QA  +  LK  DV I IS SG  K++++ A + R+ GAT+I +
Sbjct:   17 NEQKIADFLRANVSELKSVSSRKMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKEQALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVTCEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEVARKQGATVIAI 215          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: MURR_SHIFL (HTH-type transcriptional regulator murR OS=Shigella flexneri GN=murR PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.531e-16
Identity = 57/199 (28.64%), Postives = 94/199 (47.24%), Query Frame = -2
Query:   25 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAG-------ASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITL 600
            +E K+AD +    +  +       A  +GIS+ +IV+F + +G  GF +L++ L    +A        A     +I  DDS+   + K+       L +     D   LQK +  +S+A  ++  G G S  V  D   K  ++    A  +D H+QA  +  LK  DV I IS SG  K++++ A   R+ GAT+I +
Sbjct:   17 NEQKIADFLRARVSELKSVSSRQMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHVHSSITSDDSLEVIARKLNREKEMALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAI 215          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: MURR_SHIBS (HTH-type transcriptional regulator murR OS=Shigella boydii serotype 4 (strain Sb227) GN=murR PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.531e-16
Identity = 58/209 (27.75%), Postives = 98/209 (46.89%), Query Frame = -2
Query:   25 IAPSGHLIRTSEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAG-------ASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITL 630
            I+ +G     +E K+AD +  + +  +       A  +GIS+ +IV+F + +G  GF +L++ L    +A        A     +I  DDS+   + K+       L +     D   LQK +  +S+A  ++  G G S  V  D   K  ++    A  +D H+QA  +  LK  DV I IS SG  K++++     R+ GAT+I +
Sbjct:    7 ISNAGSEFTENEQKIADFLQANVSELQSVSSRQMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNTTALHLHSSITSDDSLEVIARKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCVEAARKQGATVIAI 215          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: MURR_ECOHS (HTH-type transcriptional regulator murR OS=Escherichia coli O9:H4 (strain HS) GN=murR PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.531e-16
Identity = 57/199 (28.64%), Postives = 95/199 (47.74%), Query Frame = -2
Query:   25 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAG-------ASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITL 600
            +E K+AD +  + +  +       A  +GIS+ +IV+F + +G  GF +L++ L    +A        A     +I  DDS+   + K+       L +     D   LQK +  +S+A  ++  G G S  V  D   K  ++    A  +D H+QA  +  LK  DV I IS SG  K++++ A   R+ GAT+I +
Sbjct:   17 NEQKIADFLRANVSELKSVSSRKMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAI 215          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: MURR_SHISS (HTH-type transcriptional regulator murR OS=Shigella sonnei (strain Ss046) GN=murR PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.023e-16
Identity = 57/199 (28.64%), Postives = 95/199 (47.74%), Query Frame = -2
Query:   25 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAG-------ASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITL 600
            +E K+AD +  + +  +       A  +GIS+ +IV+F + +G  GF +L++ L    +A        A     +I  DDS+   + K+       L +     D   LQK +  +S+A  ++  G G S  V  D   K  ++    A  +D H+QA  +  LK  DV I IS SG  K++++ A   R+ GAT+I +
Sbjct:   17 NEQKIADFLRANVSELKSVSSRKMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVAYEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAI 215          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: MURR_SHIF8 (HTH-type transcriptional regulator murR OS=Shigella flexneri serotype 5b (strain 8401) GN=murR PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.023e-16
Identity = 57/199 (28.64%), Postives = 94/199 (47.24%), Query Frame = -2
Query:   25 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAG-------ASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITL 600
            +E K+AD +    +  +       A  +GIS+ +IV+F + +G  GF +L++ L    +A        A     +I  DDS+   + K+       L +     D   LQK +  +S+A  ++  G G S  V  D   K  ++    A  +D H+QA  +  LK  DV I IS SG  K++++ A   R+ GAT+I +
Sbjct:   17 NEQKIADFLRARVSELKSVSSRQMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAI 215          
The following BLAST results are available for this feature:
BLAST of EY729297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
MURR_ECO5E1.585e-1628.64HTH-type transcriptional regulator murR OS=Escheri... [more]
MURR_ECO571.585e-1628.64HTH-type transcriptional regulator murR OS=Escheri... [more]
MURR_ECOLU2.070e-1629.15HTH-type transcriptional regulator murR OS=Escheri... [more]
MURR_ECOLC2.704e-1628.64HTH-type transcriptional regulator murR OS=Escheri... [more]
MURR_ECO7I2.704e-1628.14HTH-type transcriptional regulator murR OS=Escheri... [more]
MURR_SHIFL3.531e-1628.64HTH-type transcriptional regulator murR OS=Shigell... [more]
MURR_SHIBS3.531e-1627.75HTH-type transcriptional regulator murR OS=Shigell... [more]
MURR_ECOHS3.531e-1628.64HTH-type transcriptional regulator murR OS=Escheri... [more]
MURR_SHISS6.023e-1628.64HTH-type transcriptional regulator murR OS=Shigell... [more]
MURR_SHIF86.023e-1628.64HTH-type transcriptional regulator murR OS=Shigell... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-B01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729297 ID=EY729297; Name=EY729297; organism=Citrus sinensis; type=EST; length=910bp
CGCCAATGGCGTCTGGCTCGGGCACAGGGTAATCAGGGTCGCGCCGCTTT
CACGCACCAGGTTGGCGGTGATCAGCAAATCCTTGGAGCGGCCGGACTGG
GAAATGCAGATCGCCACGTCGGTGGGCTTCAACGTCACTGCCGACATCGC
CTGCATGTGCGGGTCGCTGTAGGCCGCCGCCGTCAGCAGCAAACGGAAGA
ACTTGTGCTGGGCATCCGCCGCCACCGCACCGGACGCGCCGAAACCATAG
AACTCCACGCGCTGGGCCTGGGACATGGCGGTCACGGCTTTTTGCAGCTC
TACCGGGTCAAGCTTTTCCCGCACTTCCATCAGGGTATGCAGGGTGGTGT
CGAAAATTTTCAGGCTGTANTCGGCGACGGAGTCGTCTTCGTGAATCGCG
AACTGCCCGAAGCTCGCACCGGCGGCGAGGCTCTGGGCCAGCTTGAGCTT
CAAGTCCTGGAACCCGGAGCAACCAATGGCGCGGCAGAAGCGCACGATGG
TCGGCTCGCTGATTCCCACGCTGTGGGCCGAGTCCGCCATGGGACTGTGC
CTTCAAGCCGCAGGGTCATGCAGCACGTGATCGGCAACCTTGATTTCCGA
TGTGCGTATCAGGTGGCCCGACGGGGCGATATGTTGCACAGGGTCCAAGG
GCTGGGACTCTGTTGTGGGCGGACGCCGGGGAGGTAGCGCGCGGTGGGTG
GGGGGGCCTCAGTACCGCTAGGGCCGGCGATGCGTCGGTTAGTGGGGCGT
TGCCGGTGAGACGGGCGAGGGACCGTGGAGCCCGCCGTGGGGTGGCGTCC
ACGATGGAAACGCGGATGGTGGTAGCAAACGGAGAAACGCCGGCTCCGCG
GACGGTCGAGGTGAGCGGGCGCTGCTGGGGACGCCGCTGCGGGGAGTGAG
CGGAAGGGGT
back to top