EY729297

Overview
NameEY729297
Unique NameEY729297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: MURR_SHIDS (HTH-type transcriptional regulator murR OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=murR PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.027e-15
Identity = 56/199 (28.14%), Postives = 94/199 (47.24%), Query Frame = -2
Query:   25 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAG-------ASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITL 600
            +E K+AD +  + +  +       A  +GIS+ +IV+F + +G  GF +L++ L    +A        A     +I  DDS+   + K+       L +     D   LQK +  +S+A  ++  G G S  V  D   K  ++       +D H+QA  +  LK  DV I IS SG  K++++ A   R+ GAT+I +
Sbjct:   17 NEQKIADFLRANVSELKSVSSRKMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIARKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVTCEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAI 215          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: YFHH_ECOLI (Uncharacterized HTH-type transcriptional regulator yfhH OS=Escherichia coli (strain K12) GN=yfhH PE=4 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.753e-15
Identity = 53/196 (27.04%), Postives = 92/196 (46.94%), Query Frame = -2
Query:   25 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHE----DDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITL 600
            S+ K+AD++L  P   RH      A+  G+S+ ++V+F + +G  GF  LKL L+++LA+        IH     DD +     K+       +          +L + VT +  A+R+   G GASG VA +   K  ++   AAA  D H    +     P D+ + IS +G  ++L + A+ +   G  ++ +
Sbjct:   17 SDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYKGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAI 212          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: MURR_SALAR (HTH-type transcriptional regulator murR OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=murR PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.484e-14
Identity = 53/199 (26.63%), Postives = 95/199 (47.74%), Query Frame = -2
Query:   25 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAG-------ASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITL 600
            +E K+A  +L      +     + A  + IS+ +IV+F + +G +GF +L++ L +  +         A     +I  +DS+   + K+    +  L E    +D   L++ +  +S+A  ++  G G S  V  D   K  ++    A   D H+QA  A  L+  DV I IS SG  K++++ A   R+ GAT+I +
Sbjct:   17 NEQKIATFLLAHVGELKTVSSRNMAKQLEISQSSIVKFAQKLGANGFTELRMALIEEHSVSREKKRDKAVHLHSSITSEDSLEMMARKLNREKIVALEETYNLMDYERLEQVINLISKAPLIQITGVGGSALVGRDLSFKLMKIGFRVACEVDTHVQATIAQALRQGDVQIAISYSGSKKEIVLCAEAARKQGATVIAI 215          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: MURR_CITK8 (HTH-type transcriptional regulator murR OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=murR PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.531e-14
Identity = 52/199 (26.13%), Postives = 95/199 (47.74%), Query Frame = -2
Query:   25 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAG-------ASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITL 600
            +E K+A  +L   +  +     + A  + +S+ +IV+F + +G  GF +L++ L +  +         A      I  +DS+   + K+    +  L E    +D   L++ +  +S+A+ ++  G G S  V  D   K  ++    A   D H+QA  A  L+  DV I IS SG  K++++ A   R+ GAT+I +
Sbjct:   17 NEQKIASFLLAHVSELKTVSSRNLAKQLEVSQSSIVKFAQKLGAKGFTELRMALIEEYSVNREKKHDTALHLHSTITSEDSLEVIARKLNREKMFALEETCSLMDFDRLKQVINLISKARLIQITGVGGSALVGRDLSFKLMKIGYRVACEVDTHVQATIAQALQEGDVQIAISYSGSKKEIVLCAEAARKQGATVIAI 215          
The following BLAST results are available for this feature:
BLAST of EY729297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
MURR_SHIDS1.027e-1528.14HTH-type transcriptional regulator murR OS=Shigell... [more]
YFHH_ECOLI1.753e-1527.04Uncharacterized HTH-type transcriptional regulator... [more]
MURR_SALAR1.484e-1426.63HTH-type transcriptional regulator murR OS=Salmone... [more]
MURR_CITK82.531e-1426.13HTH-type transcriptional regulator murR OS=Citroba... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-B01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729297 ID=EY729297; Name=EY729297; organism=Citrus sinensis; type=EST; length=910bp
CGCCAATGGCGTCTGGCTCGGGCACAGGGTAATCAGGGTCGCGCCGCTTT
CACGCACCAGGTTGGCGGTGATCAGCAAATCCTTGGAGCGGCCGGACTGG
GAAATGCAGATCGCCACGTCGGTGGGCTTCAACGTCACTGCCGACATCGC
CTGCATGTGCGGGTCGCTGTAGGCCGCCGCCGTCAGCAGCAAACGGAAGA
ACTTGTGCTGGGCATCCGCCGCCACCGCACCGGACGCGCCGAAACCATAG
AACTCCACGCGCTGGGCCTGGGACATGGCGGTCACGGCTTTTTGCAGCTC
TACCGGGTCAAGCTTTTCCCGCACTTCCATCAGGGTATGCAGGGTGGTGT
CGAAAATTTTCAGGCTGTANTCGGCGACGGAGTCGTCTTCGTGAATCGCG
AACTGCCCGAAGCTCGCACCGGCGGCGAGGCTCTGGGCCAGCTTGAGCTT
CAAGTCCTGGAACCCGGAGCAACCAATGGCGCGGCAGAAGCGCACGATGG
TCGGCTCGCTGATTCCCACGCTGTGGGCCGAGTCCGCCATGGGACTGTGC
CTTCAAGCCGCAGGGTCATGCAGCACGTGATCGGCAACCTTGATTTCCGA
TGTGCGTATCAGGTGGCCCGACGGGGCGATATGTTGCACAGGGTCCAAGG
GCTGGGACTCTGTTGTGGGCGGACGCCGGGGAGGTAGCGCGCGGTGGGTG
GGGGGGCCTCAGTACCGCTAGGGCCGGCGATGCGTCGGTTAGTGGGGCGT
TGCCGGTGAGACGGGCGAGGGACCGTGGAGCCCGCCGTGGGGTGGCGTCC
ACGATGGAAACGCGGATGGTGGTAGCAAACGGAGAAACGCCGGCTCCGCG
GACGGTCGAGGTGAGCGGGCGCTGCTGGGGACGCCGCTGCGGGGAGTGAG
CGGAAGGGGT
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