EY729292

Overview
NameEY729292
Unique NameEY729292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729292 vs. ExPASy Swiss-Prot
Match: MSBA_SHIBS (Lipid A export ATP-binding/permease protein msbA OS=Shigella boydii serotype 4 (strain Sb227) GN=msbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.104e-47
Identity = 93/196 (47.45%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 LLSLLLRLYDVQQGQVLVDGKDVRDVTQHSLHQQIGLIPQEPGLFHRSIRENIHYGRLDA-SMEEVAEAIHRAGASEFIDSMEHGYESLVGERGVKLSGGQRQRIAIARVLLKNAPILVMDEATSSLDSITERFIQDKLDEIMEDKTVLVVAHRLSTVAHLDRILVFDNGRVIEDGSHEQLLRQGGQYARLWSRQF 585
            + SL+ R YD+ +G++L+DG D+R+ T  SL  Q+ L+ Q   LF+ ++  NI Y R +  S E++ EA   A A +FI+ M++G ++++GE GV LSGGQRQRIAIAR LL+++PIL++DEATS+LD+ +ER IQ  LDE+ +++T LV+AHRLST+   D I+V ++G ++E G+H  LL   G YA+L   QF
Sbjct:  385 IASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQF 580          
BLAST of EY729292 vs. ExPASy Swiss-Prot
Match: MSBA_ECOUT (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain UTI89 / UPEC) GN=msbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.104e-47
Identity = 93/196 (47.45%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 LLSLLLRLYDVQQGQVLVDGKDVRDVTQHSLHQQIGLIPQEPGLFHRSIRENIHYGRLDA-SMEEVAEAIHRAGASEFIDSMEHGYESLVGERGVKLSGGQRQRIAIARVLLKNAPILVMDEATSSLDSITERFIQDKLDEIMEDKTVLVVAHRLSTVAHLDRILVFDNGRVIEDGSHEQLLRQGGQYARLWSRQF 585
            + SL+ R YD+ +G++L+DG D+R+ T  SL  Q+ L+ Q   LF+ ++  NI Y R +  S E++ EA   A A +FI+ M++G ++++GE GV LSGGQRQRIAIAR LL+++PIL++DEATS+LD+ +ER IQ  LDE+ +++T LV+AHRLST+   D I+V ++G ++E G+H  LL   G YA+L   QF
Sbjct:  385 IASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQF 580          
BLAST of EY729292 vs. ExPASy Swiss-Prot
Match: MSBA_ECOLI (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain K12) GN=msbA PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.104e-47
Identity = 93/196 (47.45%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 LLSLLLRLYDVQQGQVLVDGKDVRDVTQHSLHQQIGLIPQEPGLFHRSIRENIHYGRLDA-SMEEVAEAIHRAGASEFIDSMEHGYESLVGERGVKLSGGQRQRIAIARVLLKNAPILVMDEATSSLDSITERFIQDKLDEIMEDKTVLVVAHRLSTVAHLDRILVFDNGRVIEDGSHEQLLRQGGQYARLWSRQF 585
            + SL+ R YD+ +G++L+DG D+R+ T  SL  Q+ L+ Q   LF+ ++  NI Y R +  S E++ EA   A A +FI+ M++G ++++GE GV LSGGQRQRIAIAR LL+++PIL++DEATS+LD+ +ER IQ  LDE+ +++T LV+AHRLST+   D I+V ++G ++E G+H  LL   G YA+L   QF
Sbjct:  385 IASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQF 580          
BLAST of EY729292 vs. ExPASy Swiss-Prot
Match: MSBA_ECOL6 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O6 GN=msbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.104e-47
Identity = 93/196 (47.45%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 LLSLLLRLYDVQQGQVLVDGKDVRDVTQHSLHQQIGLIPQEPGLFHRSIRENIHYGRLDA-SMEEVAEAIHRAGASEFIDSMEHGYESLVGERGVKLSGGQRQRIAIARVLLKNAPILVMDEATSSLDSITERFIQDKLDEIMEDKTVLVVAHRLSTVAHLDRILVFDNGRVIEDGSHEQLLRQGGQYARLWSRQF 585
            + SL+ R YD+ +G++L+DG D+R+ T  SL  Q+ L+ Q   LF+ ++  NI Y R +  S E++ EA   A A +FI+ M++G ++++GE GV LSGGQRQRIAIAR LL+++PIL++DEATS+LD+ +ER IQ  LDE+ +++T LV+AHRLST+   D I+V ++G ++E G+H  LL   G YA+L   QF
Sbjct:  385 IASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQF 580          
BLAST of EY729292 vs. ExPASy Swiss-Prot
Match: MSBA_ECOL5 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=msbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.104e-47
Identity = 93/196 (47.45%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 LLSLLLRLYDVQQGQVLVDGKDVRDVTQHSLHQQIGLIPQEPGLFHRSIRENIHYGRLDA-SMEEVAEAIHRAGASEFIDSMEHGYESLVGERGVKLSGGQRQRIAIARVLLKNAPILVMDEATSSLDSITERFIQDKLDEIMEDKTVLVVAHRLSTVAHLDRILVFDNGRVIEDGSHEQLLRQGGQYARLWSRQF 585
            + SL+ R YD+ +G++L+DG D+R+ T  SL  Q+ L+ Q   LF+ ++  NI Y R +  S E++ EA   A A +FI+ M++G ++++GE GV LSGGQRQRIAIAR LL+++PIL++DEATS+LD+ +ER IQ  LDE+ +++T LV+AHRLST+   D I+V ++G ++E G+H  LL   G YA+L   QF
Sbjct:  385 IASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQF 580          
BLAST of EY729292 vs. ExPASy Swiss-Prot
Match: MSBA_ECO57 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O157:H7 GN=msbA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.104e-47
Identity = 93/196 (47.45%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 LLSLLLRLYDVQQGQVLVDGKDVRDVTQHSLHQQIGLIPQEPGLFHRSIRENIHYGRLDA-SMEEVAEAIHRAGASEFIDSMEHGYESLVGERGVKLSGGQRQRIAIARVLLKNAPILVMDEATSSLDSITERFIQDKLDEIMEDKTVLVVAHRLSTVAHLDRILVFDNGRVIEDGSHEQLLRQGGQYARLWSRQF 585
            + SL+ R YD+ +G++L+DG D+R+ T  SL  Q+ L+ Q   LF+ ++  NI Y R +  S E++ EA   A A +FI+ M++G ++++GE GV LSGGQRQRIAIAR LL+++PIL++DEATS+LD+ +ER IQ  LDE+ +++T LV+AHRLST+   D I+V ++G ++E G+H  LL   G YA+L   QF
Sbjct:  385 IASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQF 580          
BLAST of EY729292 vs. ExPASy Swiss-Prot
Match: AB21B_ARATH (ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.104e-47
Identity = 98/210 (46.67%), Postives = 147/210 (70.00%), Query Frame = 1
Query:    1 LLSLLLRLYDVQQGQVLVDGKDVRDVTQHSLHQQIGLIPQEPGLFHRSIRENIHYGRLDASMEEVAEAIHRAGASEFIDSMEHGYESLVGERGVKLSGGQRQRIAIARVLLKNAPILVMDEATSSLDSITERFIQDKLDEIMEDKTVLVVAHRLSTVAHLDRILVFDNGRVIEDGSHEQLLRQ-GGQYARLW-----SRQFSDALDEVAL 612
            ++SL+ R YD Q G+V +DG ++++     +  +IGL+ QEP LF  SI+ENI YG+ +A++EE+ +A   A AS+FID +  G +++VGE G +LSGGQ+QRIA+AR +LK+  IL++DEATS+LD+ +ER +Q+ LD IM ++T +VVAHRLSTV + D I V   G+++E GSH +LLR   G Y++L      ++Q  D+ DE  L
Sbjct:  447 VVSLIERFYDPQSGEVRIDGINLKEFQLKWIRSKIGLVSQEPVLFTSSIKENIAYGKENATVEEIRKATELANASKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQEDTKQTEDSTDEQKL 656          

HSP 2 Score: 177.948 bits (450), Expect = 6.317e-44
Identity = 90/192 (46.88%), Postives = 134/192 (69.79%), Query Frame = 1
Query:    1 LLSLLLRLYDVQQGQVLVDGKDVRDVTQHSLHQQIGLIPQEPGLFHRSIRENIHYGRL-DASMEEVAEAIHRAGASEFIDSMEHGYESLVGERGVKLSGGQRQRIAIARVLLKNAPILVMDEATSSLDSITERFIQDKLDEIMEDKTVLVVAHRLSTVAHLDRILVFDNGRVIEDGSHEQLLR-QGGQYARL 570
            +++LL R YD   GQ+ +DG +++ +    L QQ GL+ QEP LF+ +IR NI YG+  DA+  E+  A   + A  FI  ++ GY+++VGERGV+LSGGQ+QR+AIAR ++K+  +L++DEATS+LD+ +ER +QD LD +M ++T +VVAHRLST+ + D I V  NG ++E G HE L+  + G YA L
Sbjct: 1092 VIALLQRFYDPDSGQITLDGVEIKTLQLKWLRQQTGLVSQEPVLFNETIRANIAYGKGGDATETEIVSAAELSNAHGFISGLQQGYDTMVGERGVQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLINIKDGVYASL 1283          
BLAST of EY729292 vs. ExPASy Swiss-Prot
Match: NDVA_RHOP5 (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhodopseudomonas palustris (strain BisA53) GN=ndvA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.972e-47
Identity = 97/194 (50.00%), Postives = 136/194 (70.10%), Query Frame = 1
Query:    4 LSLLLRLYDVQQGQVLVDGKDVRDVTQHSLHQQIGLIPQEPGLFHRSIRENIHYGRLDASMEEVAEAIHRAGASEFIDSMEHGYESLVGERGVKLSGGQRQRIAIARVLLKNAPILVMDEATSSLDSITERFIQDKLDEIMEDKTVLVVAHRLSTVAHLDRILVFDNGRVIEDGSHEQLLRQGGQYARLWSRQF 585
            ++LL R +D Q G + +DG DVR +T   L + IG++ QE  LF R+I +N+  G+ DA+ EE+  A  RA A +FI+  E  +++  GERG  LSGG+RQR++IAR LLK+ PIL++DEATS+LD++TE  +   LDE+M+ +T  V+AHRLST+ H  RILVFDNGRVIE GS ++LL + G +A L   QF
Sbjct:  388 IALLHRAFDPQSGVIKIDGMDVRGLTLAGLRRNIGVVFQEALLFDRTIADNLRVGKPDATEEEMRIAASRAQALDFIERSELKFDTNAGERGRMLSGGERQRLSIARALLKDPPILILDEATSALDAVTEAKVNLALDEVMKGRTTFVIAHRLSTIRHATRILVFDNGRVIESGSFDELLARRGYFAELAHAQF 581          
BLAST of EY729292 vs. ExPASy Swiss-Prot
Match: MSBA_SHISS (Lipid A export ATP-binding/permease protein msbA OS=Shigella sonnei (strain Ss046) GN=msbA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.972e-47
Identity = 93/196 (47.45%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    1 LLSLLLRLYDVQQGQVLVDGKDVRDVTQHSLHQQIGLIPQEPGLFHRSIRENIHYGRLDA-SMEEVAEAIHRAGASEFIDSMEHGYESLVGERGVKLSGGQRQRIAIARVLLKNAPILVMDEATSSLDSITERFIQDKLDEIMEDKTVLVVAHRLSTVAHLDRILVFDNGRVIEDGSHEQLLRQGGQYARLWSRQF 585
            + SL+ R YD+ +G++L+DG D+R+ T  SL  Q+ L+ Q   LF+ ++  NI Y R +  S E++ EA   A A +FI+ M++G ++++GE GV LSGGQRQRIAIAR LL+++PIL++DEATS+LD+ +ER IQ  LDE+ +++T LV+AHRLST+   D I+V ++G ++E G+H  LL   G YA+L   QF
Sbjct:  385 IASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAIDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQF 580          
BLAST of EY729292 vs. ExPASy Swiss-Prot
Match: MSBA_ALCBS (Lipid A export ATP-binding/permease protein msbA OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=msbA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.972e-47
Identity = 93/196 (47.45%), Postives = 139/196 (70.92%), Query Frame = 1
Query:    7 SLLLRLYDVQQGQVLVDGKDVRDVTQHSLHQQIGLIPQEPGLFHRSIRENIHYGRLDASME-EVAEAIHRAGASEFIDSMEHGYESLVGERGVKLSGGQRQRIAIARVLLKNAPILVMDEATSSLDSITERFIQDKLDEIMEDKTVLVVAHRLSTVAHLDRILVFDNGRVIEDGSHEQLLRQGGQYARLWSRQFSD 591
            ++L R +D  QG++L+DG  +++     L  QI ++ Q   LF+ S+R NI YG L +S +  + +A   A A  FI+ +EHG ++L+G+ GV+LSGGQRQRIAIAR LLK+AP+L++DEATS+LDS +E  IQ  L+++M+ +T LV+AHRLST+   DRI+V D G++IE GSH+QLL + G Y +++   FS+
Sbjct:  386 AMLPRFFDPDQGRILLDGIPLQEYQLSELRNQIAMVSQRVVLFNDSVRNNIAYGELRSSDDASIIKAAKDAHAWSFIEQLEHGLDTLLGQDGVQLSGGQRQRIAIARALLKDAPVLILDEATSALDSESEHHIQQALEQVMQGRTTLVIAHRLSTIEKADRIMVLDQGQLIEQGSHQQLLEKNGLYTQMYRMNFSE 581          
The following BLAST results are available for this feature:
BLAST of EY729292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MSBA_SHIBS6.104e-4747.45Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOUT6.104e-4747.45Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOLI6.104e-4747.45Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOL66.104e-4747.45Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOL56.104e-4747.45Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECO576.104e-4747.45Lipid A export ATP-binding/permease protein msbA O... [more]
AB21B_ARATH6.104e-4746.67ABC transporter B family member 21 OS=Arabidopsis ... [more]
NDVA_RHOP57.972e-4750.00Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_SHISS7.972e-4747.45Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ALCBS7.972e-4747.45Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-A08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729292 ID=EY729292; Name=EY729292; organism=Citrus sinensis; type=EST; length=869bp
CTGCTGAGCCTGCTGCTACGTCTTTACGACGTGCAGCAAGGCCAGGTGCT
GGTGGACGGCAAGGACGTACGCGACGTCACCCAGCATTCGCTGCACCAGC
AGATCGGCCTGATTCCCCAGGAGCCGGGCTTGTTCCACCGCAGCATTCGC
GAAAACATCCATTACGGCCGCCTGGATGCCTCGATGGAAGAGGTCGCCGA
GGCGATCCACCGCGCCGGCGCCAGTGAGTTTATCGACAGCATGGAACACG
GCTACGAATCGTTGGTGGGCGAGCGTGGGGTCAAGTTGTCCGGCGGCCAG
CGTCAGCGCATTGCGATTGCCCGGGTGTTGCTGAAGAACGCGCCGATCCT
GGTGATGGACGAAGCCACTTCCAGTCTGGACTCGATCACCGAGCGCTTTA
TCCAGGACAAGCTCGACGAAATCATGGAGGACAAGACCGTGCTGGTGGTG
GCGCATCGGCTGTCCACCGTGGCCCATCTGGACCGCATCCTGGTGTTCGA
CAATGGCCGGGTGATCGAGGACGGCAGCCACGAACAGTTGCTGCGCCAGG
GCGGGCAATATGCGCGGTTGTGGAGTCGCCAGTTCAGTGATGCGCTGGAT
GAAGTCGCGCTGTGATCAGGCGGCGTNACGGGTACGCCGCGCAGTGCAGG
TCAGATCGACAGGTGCAGCACTCCCTCGTCTTTGGCGCCAGCCAGCGGGC
GGCGCTTGTTGACCTTCAACTCACCCANGTTGATCAGCAAGGTGCGGGTC
ACGTTGCGGGTCATCCCAGCAACTCCGGCGGGTGCACCTGGTTGTGATGG
CCCACCCGGGTAGCGGGGGTCACAGGCTGGGTGCCACTGGTTCGGGGAGG
TGGCGATCTGTGCTCCAAC
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