EY729290

Overview
NameEY729290
Unique NameEY729290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11828 contig Csv1_Contig11828:1..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY729290 vs. ExPASy Swiss-Prot
Match: RS3A_TORRU (40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 5.447e-13
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1
Query:  592 QIASEGSQHRVFEVSLXDLSHEEEHAYRKIRLXXEDVQGKNVLTTFW 732
            +IAS+G   RVFEVSL DL ++E+ A+RKI+L  EDVQGKNVLT FW
Sbjct:   54 KIASDGLNFRVFEVSLADLQNDEDQAFRKIKLRAEDVQGKNVLTNFW 100          

HSP 2 Score: 28.8758 bits (63), Expect = 5.447e-13
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  816 LLNYLGHEFTTDKLRSWVR 872
            L N+ G +FTTDKLRS VR
Sbjct:   96 LTNFWGMDFTTDKLRSLVR 114          
BLAST of EY729290 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 7.062e-13
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1
Query:  592 QIASEGSQHRVFEVSLXDLSHEEEHAYRKIRLXXEDVQGKNVLTTFW 732
            +IASEG +HRVFEVSL DL  +E++AYRKIRL  EDVQG+NVL  FW
Sbjct:   55 KIASEGLKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLCQFW 101          

HSP 2 Score: 25.409 bits (54), Expect = 7.062e-13
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  816 LLNYLGHEFTTDKLRSWVR 872
            L  + G +FTTDKLRS V+
Sbjct:   97 LCQFWGMDFTTDKLRSLVK 115          
BLAST of EY729290 vs. ExPASy Swiss-Prot
Match: RS3A_CHLRE (40S ribosomal protein S3a OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_168484 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 3.556e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1
Query:  592 QIASEGSQHRVFEVSLXDLSHEEEHAYRKIRLXXEDVQGKNVLTTFW 732
            +IASE  + RVFEVSL DL   E+ A+RK+RL  EDVQG+N LT FW
Sbjct:   55 KIASEALKGRVFEVSLADLQKNEDDAFRKMRLRVEDVQGRNCLTNFW 101          

HSP 2 Score: 28.8758 bits (63), Expect = 3.556e-11
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  816 LLNYLGHEFTTDKLRSWVR 872
            L N+ G +FTTDKLRS VR
Sbjct:   97 LTNFWGMDFTTDKLRSLVR 115          
BLAST of EY729290 vs. ExPASy Swiss-Prot
Match: RS3A_OSTLU (40S ribosomal protein S3a OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_28528 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 5.989e-11
Identity = 26/46 (56.52%), Postives = 39/46 (84.78%), Query Frame = 1
Query:  592 QIASEGSQHRVFEVSLXDLSHEEEHAYRKIRLXXEDVQGKNVLTTF 729
            +IAS+G + R+FE+SL DL+++E+ ++RK++L  EDVQGKNVLT F
Sbjct:   55 KIASDGLKGRIFEISLADLNNDEDQSFRKMKLKCEDVQGKNVLTNF 100          

HSP 2 Score: 28.8758 bits (63), Expect = 5.989e-11
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  816 LLNYLGHEFTTDKLRSWVRNGY 881
            L N+ G +FTTDK+RS VR  +
Sbjct:   97 LTNFAGMDFTTDKIRSLVRKWF 118          
The following BLAST results are available for this feature:
BLAST of EY729290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RS3A_TORRU5.447e-1365.9640S ribosomal protein S3a OS=Tortula ruralis GN=RP... [more]
RS3A1_ARATH7.062e-1370.2140S ribosomal protein S3a-1 OS=Arabidopsis thalian... [more]
RS3A_CHLRE3.556e-1161.7040S ribosomal protein S3a OS=Chlamydomonas reinhar... [more]
RS3A_OSTLU5.989e-1156.5240S ribosomal protein S3a OS=Ostreococcus lucimari... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-A06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729290 ID=EY729290; Name=EY729290; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGGACCAATGATGATGCTCCTTTCTCTTTACATCTGTGAAT
GGGATATGTTGTTTACTCAGATTTATTGGTATTATACTAGAGCGCATGTG
TATGTAGGCTCGTAGAGGAGTTGGACTAAAATTTTATAGGATACCTGTTT
ATGCATCACATGTAGATTAAATGCTTTTATTTGTAAGATTGGAATACACG
GGATCACACACATATAGGTTTGGTAATATTGACTTGCTTAGTTAATGTTT
GATTTCATATGTGGCCTAAGTTGGTTCTTCATGATGAATGACTAATGGTG
ATGCTCCTTTCTCCTTTAATCCATTGATGGAATATGTTGTTTACTCAGAT
ATATTGGTATTGTACTATAGTACTGAGTTGATTCAATGGCTTGTGTCTGT
AGGCTTGAAGGGGAGTAGAAGTAACACTTTATTGGATATTTGTTTATGCA
TGACATGGAGAATAAATTATTTTATTTTGGACATACATGCATGGTTGGTG
TACGTCAAGCTTTCACTGCATTCGGCCAACCAACTAGGCTATCTTTTGTG
GAACACTCACACACTCATTTTAATTGCTCGAGTCTTTTTAACAGATTGCA
TCAGAAGGGTCTCAGCACAGAGTGTTTGAGGTATCACTANGTGATCTTTC
TCATGAAGAAGAGCATGCTTACAGGAAGATCAGACTGANANCTGAAGATG
TCCAAGGGAAGAATGTTTTGACTACCTTCTGGGTATACTTTAATGGATGG
GAAATGTTTTGTTTGCTTCACAAATTTTCACTCTGCTAGTGACATGCTAA
CGGTTTCACCATTTCCTTTTGAATTATTTAGGGCATGAATTCACTACAGA
CAAGCTGAGGTCTTGGGTTAGGAATGGATACTTGGATTGAAGCT
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