EY729288

Overview
NameEY729288
Unique NameEY729288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY729288_ssr14 microsatellite EY729288_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12501 contig Csv1_Contig12501:14..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_CLOD6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium difficile (strain 630) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.254e-26
Identity = 63/170 (37.06%), Postives = 100/170 (58.82%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            VA++++DG+G  K  K N I  + TP +D  KK  P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  ++  G  + ++       + +  +LH++GLLSDGGVHS +D L+ ++K A ++G +++ +H  TDGRD    S + + K ++  + E+
Sbjct:    6 VALIIMDGFGYNKDVKGNAIAESKTPNLDRIKKEYPNT--LINASGLDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKSIKDGDFFTNKVLCEAMDNAKENSLHVMGLLSDGGVHSHIDHLKAIIKMAKDKGVQKVYVHAFTDGRDTDPQSALEYAKEVQASMDEI 172          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_PROMT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain NATL2A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 66/166 (39.76%), Postives = 94/166 (56.63%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIE 624
            V + +LDGWG  +  ++N +  A TP +D+   + P    L+ A G+ VGLP E  MGNSEVGH  +GAGRI  Q    +   +   K+  +   N    S + G  TLH++GL SDGGVHS +  L  L++ A+ +G K + LH+ TDGRD    S   ++ TIE
Sbjct:   18 VVLAILDGWGYREEIEHNAVRQASTPVIDALWHAYPHT--LIEASGADVGLPDEQ-MGNSEVGHLTIGAGRIIQQELVRISNTVKENKLIANPALNQFSQSLKKGGGTLHIMGLCSDGGVHSHIKHLCGLIEWAASKGLKNVSLHLFTDGRDTSAKSATKYINTIE 180          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_LISMF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 66/174 (37.93%), Postives = 101/174 (58.05%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAELRW 648
            VA+++LDG+G+      N +  A+ P  D +  + P     L+A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   S + +++T++K +++L +
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAISDLNY 176          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_LISMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.551e-26
Identity = 66/174 (37.93%), Postives = 100/174 (57.47%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAELRW 648
            VA+++LDG+G+      N +  A+ P  D +    P     L+A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   S + +++T++K +++L +
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWADFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAISDLNY 176          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_THERP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.250e-26
Identity = 75/179 (41.90%), Postives = 98/179 (54.75%), Query Frame = 1
Query:  115 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAELR 645
            + R  +V +VVLDGW        N I  A TP MD  + + P     LR  G  VGLP +D MGNSEVGH  LGAGRI  Q    +DLA+  G  +Q+E F   +  + + G TLHL+GL+ DGGVHS    L  LL+ A+  G  R+ +H  TDGRD    S +  ++ +   L  LR
Sbjct:    1 MDRPPMVCLVVLDGWAIGPDYPGNAIRAAHTPVMDRLQATYP--MTTLRCWGRDVGLP-DDQMGNSEVGHLNLGAGRIVYQLITRIDLAIEDGSFFQNEAFQRALDRARQPGRTLHLMGLIGDGGVHSHQRHLLALLELAARAGISRVAVHAFTDGRDTAPTSGIEHLRELLAALDRLR 176          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_PROM1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain NATL1A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.250e-26
Identity = 66/166 (39.76%), Postives = 95/166 (57.23%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIE 624
            V + +LDGWG  +  ++N +  A TP +D+   + P    L+ A G+ VGLP E  MGNSEVGH  +GAGRI  Q    +   +   K+  +   N    S + G  TLH++GL SDGGVHS ++ L  L++ A+ +G K + LH+ TDGRD    S   ++ TIE
Sbjct:   18 VVLAILDGWGYREEIEHNAVRQASTPVIDALWHAYPHT--LIEASGADVGLPDEQ-MGNSEVGHLTIGAGRIIQQELVRISNTVKENKLITNPALNQFSQSLKKGGGTLHIMGLCSDGGVHSHINHLCGLIEWAASKGLKSVSLHLFTDGRDTSAKSANKYINTIE 180          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_LISW6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 66/174 (37.93%), Postives = 99/174 (56.90%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAELRW 648
            VA+++LDG+G+      N +  A+ P  D +    P     L+A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   S + +++T++K + +L +
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWADFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAMNDLNY 176          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_SILST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter sp. (strain TM1040) GN=gpmI PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.615e-25
Identity = 67/170 (39.41%), Postives = 96/170 (56.47%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN-YIKPSFET-GTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLA 636
            V + +LDGWG  +P   N  ++A TPT+D+  +S P     L  HG  VGLP+   MGNSEVGH  +GAGR+ A     +DLA+  G  Y ++    +I    ET G  HL+GL+SDGGVH  +  +   +K   + G   + LH +TDGRDV   S + ++  +E  +A
Sbjct:    7 VVLCILDGWGSAEPGPANAPYLAKTPTLDAIMQSCPTA--RLVTHGPDVGLPS-GQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEDGSFYDNDALQAFIAKLKETGGAAHLMGLVSDGGVHGHVTHILAAIKAIRDAGVP-VWLHAITDGRDVAPKSALTYLDQLEAGMA 172          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI1_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina acetivorans GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.615e-25
Identity = 68/165 (41.21%), Postives = 98/165 (59.39%), Query Frame = 1
Query:  139 VVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYI-KPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEK 627
            +++LDGWG  + ++ N +  A TP +D   K  P  W LL A G AVGLP E  MGNSE GH  +GAGRI  Q    +++++ +G  +++  F N I K      +LHLIGL+S GGVHS    L  L+K A E+G K++ +H   DGRDV   + +G +K + +
Sbjct:   10 LIILDGWGYREVEEGNAVLSAGTPNLDRLVKDYP--WCLLEASGGAVGLP-EGMMGNSEDGHLNIGAGRIVYQNLTRINISIRNGDFFKNPVFLNAISKVKANDSSLHLIGLVSCGGVHSYTPHLHALIKLAKEKGLKKVYIHAFLDGRDVPPKTALGDIKKLNE 171          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_PROM3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain MIT 9303) GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.598e-25
Identity = 66/166 (39.76%), Postives = 96/166 (57.83%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIE 624
            V + +LDGWG  +  ++N I  A+TP MD+   + P    L+ A G+AVGLP ++ MGNSEVGH  +GAGR+  Q    +   + +G++ Q      +        GTLHL+GL SDGGVHS ++ L  LL  A+  G  ++ LH++TDGRD    S   ++  IE
Sbjct:   18 VVLAILDGWGHREELEHNSIRSAETPIMDALWHAYPHT--LIEASGAAVGLP-DNQMGNSEVGHLTIGAGRVIRQELVRISETVQTGRLGQTPALIALAERLRKSDGTLHLLGLCSDGGVHSHINHLCGLLHWAAAAGLNKVALHLITDGRDTPTQSASNYLHQIE 180          
The following BLAST results are available for this feature:
BLAST of EY729288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_CLOD63.254e-2637.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMT4.250e-2639.762,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISMF4.250e-2637.932,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISMO5.551e-2637.932,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THERP7.250e-2641.902,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROM17.250e-2639.762,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISW61.237e-2537.932,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SILST1.615e-2539.412,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METAC1.615e-2541.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROM33.598e-2539.762,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-A03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729288 ID=EY729288; Name=EY729288; organism=Citrus sinensis; type=EST; length=830bp
CACGCGTCCGCTCTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCG
CCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAA
AAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGTTG
GATGGCTGGGGCGAGTTCAAGCCCGACAAGTATAACTGCATCCATGTCGC
CGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCCCCTGGGAGGTGGA
GGTTGCTCCGAGCTCACGGTAGTGCTGTGGGGCTTCCAACTGAAGATGAC
ATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTT
TGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCT
ATCAAGATGAGGGATTTAATTACATTAAGCCATCTTTTGAAACCGGCACA
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTANGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATGCTTACTGACGGGCGTGATGTTTTGGATGGTTCAANC
GTAGGATTCGTAAAAACTATTGAGAAAGATCTTGCAGAATTGCGTTGGGA
AAGGTGTTGACCCGCAGATTGCATCTGGAGGGAGGCGGATGTTCCTCCCC
ATGGACCGTTATGAGAATGATTGGGATGTTGGCAACCAAGGATGGGATGC
CCCCCTCTTGGGAGAGCGTCCCCACGGTTTACAGCCCCGTTGAGACGTGC
AAGAAGCGAGGGAGCACCCAGATGCAGTGA
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