EY729288

Overview
NameEY729288
Unique NameEY729288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY729288_ssr14 microsatellite EY729288_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12501 contig Csv1_Contig12501:14..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_EHRCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ehrlichia chaffeensis (strain Arkansas) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.874e-14
Identity = 58/178 (32.58%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  124 NNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI-----KPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            N+ V + +LDGWG  +  ++N I  +  P  D+     P     L  HG  VGLP +  +GNSEVGH  LG+GRI  Q     DL   + +I   +   Y+     K     G  H+ GLLSDGGVHS    +  ++   S     +I +H+  DGRD    S + ++  + + +  L
Sbjct:    3 NHSVILCILDGWGNSENSQFNAIAQSYKPCWDNTILQYPKSQ--LITHGLNVGLP-DGQIGNSEVGHVNLGSGRIVLQ-----DLCKINNEIKYIKNNRYLLEFIKKIKQNNGICHIAGLLSDGGVHSLHTHMLDIIDTLSNFQI-QIAVHIFLDGRDTPPISAIKYINILREHIKHL 171          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_UREPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma parvum GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.562e-12
Identity = 46/166 (27.71%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  124 NNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTI 621
            N  + ++++DG G  K D  N +H+A+ PT++    + P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +  +   +  + +  + +   +H++G+ S+G VHS  + +  ++K   +    ++ LH+++DGRD        F++ I
Sbjct:    4 NKKIGLIIIDGLGIGKEDNTNAVHLANPPTLNYLINNFP--TLQISAAQQNIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINNYMKSVDYESAVLSNIKNEIVHIVGMYSNGLVHSNYEHIHWIIKQIIKNN-NQVVLHLISDGRDDYPYGFAQFIEQI 160          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_UREP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.562e-12
Identity = 46/166 (27.71%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  124 NNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTI 621
            N  + ++++DG G  K D  N +H+A+ PT++    + P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +  +   +  + +  + +   +H++G+ S+G VHS  + +  ++K   +    ++ LH+++DGRD        F++ I
Sbjct:    4 NKKIGLIIIDGLGIGKEDNTNAVHLANPPTLNYLINNFP--TLQISAAQQNIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINNYMKSVDYESAVLSNIKNEIVHIVGMYSNGLVHSNYEHIHWIIKQIIKNN-NQVVLHLISDGRDDYPYGFAQFIEQI 160          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_UREU1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=gpmI PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11
Identity = 47/169 (27.81%), Postives = 87/169 (51.48%), Query Frame = 1
Query:  115 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTI 621
            +S N  +A++++DG G  K D  N +++A+  T++   K+ P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +    + +  + +        +H++G+ S+G VHS  + +  ++K   +    ++ LH+++DGRD        F++ I
Sbjct:    1 MSLNKKLALIIIDGLGIGKKDDTNAVYLANPKTLNYLIKNYPTLE--ISAAQQPIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINSYTKRLDYESLVLNDINNEIVHVVGMYSNGLVHSNYEHIHWIIKELVKNN-NQVVLHLISDGRDDYPYGFAQFIEQI 160          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_TOBBP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Fragment) OS=Tomato big bud phytoplasma GN=gpmI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  268 GSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSXLD 501
            G AVGLP +  MGNSEVGH  LGAGR+  Q    ++  +  G  ++++ F  +    +T    LHL+GL+SDGGVHS LD
Sbjct:    1 GEAVGLPAQQ-MGNSEVGHLNLGAGRVVHQSLTYINRKIKDGSFFKNKCFLKVIQHVKTNKSKLHLLGLVSDGGVHSHLD 79          
The following BLAST results are available for this feature:
BLAST of EY729288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_EHRCR4.874e-1432.582,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREPA4.562e-1227.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREP24.562e-1227.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREU15.044e-1127.812,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_TOBBP8.604e-1146.252,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-A03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729288 ID=EY729288; Name=EY729288; organism=Citrus sinensis; type=EST; length=830bp
CACGCGTCCGCTCTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCG
CCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAA
AAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGTTG
GATGGCTGGGGCGAGTTCAAGCCCGACAAGTATAACTGCATCCATGTCGC
CGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCCCCTGGGAGGTGGA
GGTTGCTCCGAGCTCACGGTAGTGCTGTGGGGCTTCCAACTGAAGATGAC
ATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTT
TGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCT
ATCAAGATGAGGGATTTAATTACATTAAGCCATCTTTTGAAACCGGCACA
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTANGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATGCTTACTGACGGGCGTGATGTTTTGGATGGTTCAANC
GTAGGATTCGTAAAAACTATTGAGAAAGATCTTGCAGAATTGCGTTGGGA
AAGGTGTTGACCCGCAGATTGCATCTGGAGGGAGGCGGATGTTCCTCCCC
ATGGACCGTTATGAGAATGATTGGGATGTTGGCAACCAAGGATGGGATGC
CCCCCTCTTGGGAGAGCGTCCCCACGGTTTACAGCCCCGTTGAGACGTGC
AAGAAGCGAGGGAGCACCCAGATGCAGTGA
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