EY729288

Overview
NameEY729288
Unique NameEY729288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY729288_ssr14 microsatellite EY729288_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12501 contig Csv1_Contig12501:14..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_PROMP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.046e-24
Identity = 69/168 (41.07%), Postives = 97/168 (57.74%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQ----DEGFNYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIE 624
            V + +LDGWG  + +  N I  A+TP MDS   + P    L+ A G+ VGLP    MGNSEVGH  +G+GRI  Q    +   + + ++ Q     E  N IK   + GTLH+ GL SDGGVHS +D L  L+K ASE   +++ +H++TDGRD    S   +++ IE
Sbjct:   19 VVLAILDGWGHREENLDNAIKNANTPIMDSLWHAYPHT--LINASGADVGLPN-GQMGNSEVGHLTIGSGRIIQQELVRITNVVKNNQLTQVNELKEMANSIKK--KKGTLHITGLCSDGGVHSHIDHLLGLIKWASEEHIEKVAIHIITDGRDTPAKSAYKYIRQIE 181          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_CHLSY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.046e-24
Identity = 67/180 (37.22%), Postives = 99/180 (55.00%), Query Frame = 1
Query:  115 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            ++R   V ++++DGWG   P   N   +ADTP +D++  + P  +  L A G  VGLP E  +GNSEVGH  +GAG +  Q    +  A+A G  + +    +   ++K       LHL+GL   GGVH+  D L  LL+ A     +R+ LH+  DGRDVL  S +GF+ T+E  +A L
Sbjct:    1 MTRPRPVVLIIMDGWGIAPPGPGNAADLADTPHVDAWMANCP--FTTLGASGLDVGLP-EGQIGNSEVGHLNIGAGFVVYQELTRISKAIADGDFFTNPVLLQAIEHVKQ--RNSALHLMGLFGPGGVHAHEDHLHALLELAHRHHLQRVYLHLFLDGRDVLPRSALGFLDTLEGVIARL 175          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.046e-24
Identity = 67/180 (37.22%), Postives = 99/180 (55.00%), Query Frame = 1
Query:  115 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            ++R   V ++++DGWG   P   N   +ADTP +D++  + P  +  L A G  VGLP E  +GNSEVGH  +GAG +  Q    +  A+A G  + +    +   ++K       LHL+GL   GGVH+  D L  LL+ A     +R+ LH+  DGRDVL  S +GF+ T+E  +A L
Sbjct:    1 MTRPRPVVLIIMDGWGIAPPGPGNAADLADTPHVDAWMANCP--FTTLGASGLDVGLP-EGQIGNSEVGHLNIGAGFVVYQELTRISKAIADGDFFTNPVLLQAIEHVKQ--RNSALHLMGLFGPGGVHAHEDHLHALLELAHRHHLQRVYLHLFLDGRDVLPRSALGFLDTLEGVIARL 175          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_BACLD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.978e-24
Identity = 70/175 (40.00%), Postives = 98/175 (56.00%), Query Frame = 1
Query:  124 NNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            N + A+++LDG+G       N +  A  P  D +    P +   L A G AVGLP +  MGNSEVGH  +GAGRI  Q    V++A+  G+  Q+E F   +K   E GT LHL GLLSDGGVHS +  L  LLK A + G + + +H   DGRDV   +   ++K ++  + E+
Sbjct:    3 NKLAALIILDGFGLRDETVGNAVAQAKKPNFDRYWNKYPHQ--TLTASGEAVGLP-DGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFEQNETFLAAMKHVKEKGTNLHLFGLLSDGGVHSHIHHLYALLKLAKKEGVENVYIHGFLDGRDVGPQTAEKYIKELQDQIEEI 174          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_METMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanosarcina mazei GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.196e-24
Identity = 62/166 (37.35%), Postives = 99/166 (59.64%), Query Frame = 1
Query:  139 VVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIE 624
            +++LDGWG  +  + N I  A TP +D  +K  P  +  L   G AVGLP +  MGNSEVGH  +GAGR+  Q    +++++ +G  +++    +  + +K      +LHL+GL+S GGVHS +  L  L+K A E+G K++ +H+  DGRDV   + +G VK ++
Sbjct:   16 LMILDGWGYREEKEGNAILAASTPHLDRLQKERPSCF--LETSGEAVGLP-QGQMGNSEVGHLNIGAGRVVYQDLTKINVSIRNGDFFENPVLLDAISNVK--LNNSSLHLMGLVSYGGVHSHMTHLYALIKLAQEKGLKKVYIHVFLDGRDVPPKAALGDVKELD 176          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_GEOKA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacillus kaustophilus GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.196e-24
Identity = 70/174 (40.23%), Postives = 102/174 (58.62%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGT-LHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAE 639
            VA+++LDG+        N +  A+ P  D +    P    +L+A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F    N++K   + GT LHL GLLSDGGVHS +  L  LL+ A++ G KR+ +H   DGRDV   +   ++K +++ + E
Sbjct:    6 VALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHT--MLKACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNIAIREGEFDRNETFLAAMNHVK---QHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKE 173          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_FLAPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.196e-24
Identity = 70/172 (40.70%), Postives = 96/172 (55.81%), Query Frame = 1
Query:  124 NNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEK 627
            N  V +++LDGWG+    K + I  A+ P ++S  K+ P     LR  G  VGLP E  MGNSEVGH  LGAGRI  Q    ++LA+ +  + Q+    E F Y K + +   +H +GLLSDGGVHS    L+ LL  A   G K+  +H  TDGRDV   S +  ++ + K
Sbjct:    2 NKKVILMILDGWGKSPDPKVSAIDNANIPFINSLYKNYPSAQ--LRTDGLNVGLP-EGQMGNSEVGHMNLGAGRIVYQDLAKINLAVQNKTLSQEKALKEAFQYAKENNKP--IHFLGLLSDGGVHSHTSHLRGLLDAAQNFGLKKTFIHAFTDGRDVDPKSAIATIENLNK 168          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_CELJU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cellvibrio japonicus (strain Ueda107) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.196e-24
Identity = 62/160 (38.75%), Postives = 91/160 (56.88%), Query Frame = 1
Query:  115 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET----GTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRD 582
            +S    V +++LDG+G  +  KYN ++ A TP  D+  K+ P    L+   G AVGLP    MGNSEVGH  +GAGR+  Q    ++ +++ G  + +    Y+K           +H++GLLS+GGVHS  D L  ++  A ERGAK++ LH   DGRD
Sbjct:    1 MSAKKPVVLLILDGYGYSERTKYNAVYAAQTPVYDNLWKTCPNT--LIDTSGMAVGLPA-GQMGNSEVGHTTIGAGRVVYQSFTRINKSISDGDFFTNP--EYVKAIDSAIANDRAVHILGLLSEGGVHSHQDHLYAMINMAVERGAKQVYLHAFLDGRD 155          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Corby) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24
Identity = 65/177 (36.72%), Postives = 103/177 (58.19%), Query Frame = 1
Query:  115 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAE 639
            +S N  + +++LDGWG  + D+YN I  A+TP  D + ++ P    LL+A G  VGLP E  MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGVHS    L  LL   +++  + + LH+  DGRD    S +  +K + ++L +
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPHI--LLKASGLPVGLPDEQ-MGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRDTPPQSALDSLKCLNEELVK 174          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_GEOTN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24
Identity = 70/174 (40.23%), Postives = 102/174 (58.62%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGT-LHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAE 639
            VA+++LDG+   +    N +  A+ P  D +    P     L+A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F    N++K   + GT LHL GLLSDGGVHS +  L  LL+ A++ G KR+ +H   DGRDV   +   ++K +++ + E
Sbjct:    6 VALIILDGFALREETYGNAVAQANKPNFDRYWNEYPHA--TLKACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNIAIREGEFDRNETFLAAMNHVK---QHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKE 173          
The following BLAST results are available for this feature:
BLAST of EY729288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_PROMP3.046e-2441.072,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLSY3.046e-2437.222,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAA3.046e-2437.222,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACLD3.978e-2440.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METMA5.196e-2437.352,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GEOKA5.196e-2440.232,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FLAPJ5.196e-2440.702,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CELJU5.196e-2438.752,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPC6.786e-2436.722,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GEOTN6.786e-2440.232,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-A03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729288 ID=EY729288; Name=EY729288; organism=Citrus sinensis; type=EST; length=830bp
CACGCGTCCGCTCTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCG
CCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAA
AAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGTTG
GATGGCTGGGGCGAGTTCAAGCCCGACAAGTATAACTGCATCCATGTCGC
CGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCCCCTGGGAGGTGGA
GGTTGCTCCGAGCTCACGGTAGTGCTGTGGGGCTTCCAACTGAAGATGAC
ATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTT
TGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCT
ATCAAGATGAGGGATTTAATTACATTAAGCCATCTTTTGAAACCGGCACA
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTANGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATGCTTACTGACGGGCGTGATGTTTTGGATGGTTCAANC
GTAGGATTCGTAAAAACTATTGAGAAAGATCTTGCAGAATTGCGTTGGGA
AAGGTGTTGACCCGCAGATTGCATCTGGAGGGAGGCGGATGTTCCTCCCC
ATGGACCGTTATGAGAATGATTGGGATGTTGGCAACCAAGGATGGGATGC
CCCCCTCTTGGGAGAGCGTCCCCACGGTTTACAGCCCCGTTGAGACGTGC
AAGAAGCGAGGGAGCACCCAGATGCAGTGA
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