EY729288

Overview
NameEY729288
Unique NameEY729288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY729288_ssr14 microsatellite EY729288_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12501 contig Csv1_Contig12501:14..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_BACHD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus halodurans GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24
Identity = 67/174 (38.51%), Postives = 100/174 (57.47%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            VA+++LDG+      K N +  A+ P  D +    P    LL+A G AVGLP E  MGNSEVGH  +GAGRI  Q    V+L++  G+ +++E F    N++K   +  +LH+ GL+SDGG+HS ++ L  LL+ A     +R+ +H   DGRDV   S   ++  +E  + EL
Sbjct:    6 VALIILDGFAMRDEAKGNAVAQANKPNFDRYWNQYPHA--LLKADGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNLSIREGEFFENETFLNAMNHVKE--KGSSLHIYGLVSDGGIHSHINHLYALLELAKREQVERVYIHGFLDGRDVGPTSAESYLVDLEAKMKEL 174          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_VESOH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.863e-24
Identity = 67/180 (37.22%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  118 SRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGT-----LHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            S+     +++LDGWG  K  K N I +A+T   D   ++ P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +   L +G  +++     ++ S E        +H++GLLSDGGVHS  +Q+  +L+  S +G K + LH+ TDGRD    S   ++K +E  + EL
Sbjct:    3 SKKQTKLLLILDGWGYSKTTKNNAIALANTSVWDRLNQTFPHS--LIHTSGKDVGLPGKQ-MGNSEVGHLNLGAGRIVKQDFTRIYNELQNGDFFRNP---ILRNSLEYANDNNKAIHIMGLLSDGGVHSHEEQIHAMLEMTSRQGCKNVYLHIFTDGRDCAQKSAKKYIKKLESKMKEL 176          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_SYNY3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechocystis sp. (strain PCC 6803) GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.863e-24
Identity = 69/173 (39.88%), Postives = 97/173 (56.07%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPD-KYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            V +V+LDGWG ++PD + N I  A+TP MDS   + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    +  A+  G  + ++    +  +     G LHLIGL SDGGVHS +D L  L+  A  +G  ++ +H +TDGRD        FV+ I+  L ++
Sbjct:    9 VVLVILDGWG-YRPDTRANAIAQANTPIMDSLIAAYPNT--LVNTSGKDVGLP-KGQMGNSEVGHLNLGAGRVVPQELVRISDAIEDGTFFDNQALIEVCQRVRDRRGKLHLIGLCSDGGVHSHIDHLLGLIDLAKLQGISQLCIHAITDGRDTPTNEGAHFVQQIQAHLEKI 177          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_GRATL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gracilaria tenuistipitata var. liui GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.863e-24
Identity = 70/171 (40.94%), Postives = 92/171 (53.80%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAE 639
            + + +LDGWG  +  K N I +ADTPT+D    S P    LL A G  VGLP E  MGNSEVGH  +GAGRI  Q    +  ++     + +E  N I  K +F    LHLIGL S+GGVHS +  L  LL  A  R   +I +H +TDGRD        F++ I   + +
Sbjct:    4 IILTILDGWGYSENKKGNAIQIADTPTIDKLWNSYPNT--LLNASGRDVGLP-EGQMGNSEVGHTTIGAGRIINQDLVRISKSIEDRSFFNNEAINSICQKINFYNTKLHLIGLCSNGGVHSHIKHLFALLDIAM-RYKIQICIHAITDGRDTSPYGSKIFIEEINNQIQQ 170          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_BACCN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.863e-24
Identity = 69/161 (42.86%), Postives = 95/161 (59.01%), Query Frame = 1
Query:  136 AVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFV 612
            A+++LDG+G  +    N +  A  P  D +    P     L A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F N IK   E GT LHL GLLSDGGVHS +D +  LL+ A++ G +++ +H   DGRDV   +  G++
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDRYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQNAIKHVKEKGTALHLFGLLSDGGVHSHIDHMFALLRLAAKEGVEKVYIHAFLDGRDVGPQTAKGYI 163          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_THICR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thiomicrospira crunogena (strain XCL-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.158e-23
Identity = 64/179 (35.75%), Postives = 101/179 (56.42%), Query Frame = 1
Query:  121 RNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGT-----LHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            +N    +++LDGWG  +  ++N I  A TP  D+  K       L+   G AVGLP E  MGNSEVGH  LGAGR+  Q    +   +  G+ +++   N +  + +  +     +H++GLLSDGGVHS +  ++  +K A +RGAK + +H+ TDGRD    S + +++ +E  + EL
Sbjct:    8 KNRPTGLIILDGWGHREATQHNAIAQAHTPNWDNLLKDY--HHTLINTSGLAVGLP-EGQMGNSEVGHMNLGAGRVVYQELTRIQKDIDDGRFFEN---NALVKAIDAASNRDHKVHILGLLSDGGVHSHISHIKASIKMAHDRGAK-VYVHIFTDGRDTAPQSALQYIEELETFMKEL 179          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_SYNP6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.158e-23
Identity = 69/170 (40.59%), Postives = 93/170 (54.71%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLA 636
            V +V+LDGWG     + N I  A+TP MD+  ++ P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +  A+  G I ++        +       LHLIGL SDGGVH+ LD L  LLK A+ +G + + +H +TDGRD      V  +  IE+ +A
Sbjct:    9 VVLVILDGWGYRNATEGNAIRTAETPIMDALWEAYPST--LIHTSGKDVGLP-DGQMGNSEVGHLNLGAGRIVPQELVRITDAVEDGSILENPALLQACSAVRQHGSKLHLIGLCSDGGVHAHLDHLGGLLKLAAAQGIQDVYIHAITDGRDTNPTEGVNCITKIERLIA 175          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_SYNE7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus elongatus (strain PCC 7942) GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.158e-23
Identity = 69/170 (40.59%), Postives = 93/170 (54.71%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLA 636
            V +V+LDGWG     + N I  A+TP MD+  ++ P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +  A+  G I ++        +       LHLIGL SDGGVH+ LD L  LLK A+ +G + + +H +TDGRD      V  +  IE+ +A
Sbjct:    9 VVLVILDGWGYRNATEGNAIRTAETPIMDALWEAYPST--LIHTSGKDVGLP-DGQMGNSEVGHLNLGAGRIVPQELVRITDAVEDGSILENPALLQACSAVRQHGSKLHLIGLCSDGGVHAHLDHLGGLLKLAAAQGIQDVYIHAITDGRDTNPTEGVNCITKIERLIA 175          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_TRIEI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Trichodesmium erythraeum (strain IMS101) GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.512e-23
Identity = 69/167 (41.32%), Postives = 95/167 (56.89%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKY-NCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF--ETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIE 624
            V +++LDGWG ++ +KY N I V  TP +DS  ++ P    L++A G AVGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I Q++    I          LHL+GL S GGVHS ++ L  LL  A  +G   + +H +TDGRD    S +  +K IE
Sbjct:    9 VVLIILDGWG-YREEKYGNAIAVGKTPNIDSLWQAYPRT--LIQASGKAVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAIEDGLIVQNQAIKKICQDVIERNSKLHLVGLCSSGGVHSHVNHLLGLLDVAKAKGISDVCVHAITDGRDTNPKSGLHVLKQIE 171          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_PORPU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Porphyra purpurea GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.512e-23
Identity = 68/178 (38.20%), Postives = 94/178 (52.81%), Query Frame = 1
Query:   94 KLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI-KPSFETGT-LHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTI 621
            K K HP       + + +LDGWG     + N I +A TPT+DS  ++ P    LL A G  VGLP +  MGNSEVGH  +G GR+  Q    +  ++ +   + +   N     +  T T LHLIGL S+GGVHS LD L  L+  A  +    + +H++TDGRD    S   F+K I
Sbjct:    3 KKKVHP-------IVLAILDGWGHSNSHQGNAIKIAKTPTIDSLLETYPNT--LLVASGEEVGLP-KGQMGNSEVGHTTIGGGRVVEQELVKIGNSIENKSFFNNVQLNCACDHAISTQTSLHLIGLCSNGGVHSHLDHLLALIHVAESKKVPNLYIHLITDGRDTNSNSAKSFIKLI 170          
The following BLAST results are available for this feature:
BLAST of EY729288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_BACHD6.786e-2438.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VESOH8.863e-2437.222,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNY38.863e-2439.882,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GRATL8.863e-2440.942,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACCN8.863e-2442.862,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THICR1.158e-2335.752,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNP61.158e-2340.592,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNE71.158e-2340.592,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_TRIEI1.512e-2341.322,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PORPU1.512e-2338.202,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-A03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729288 ID=EY729288; Name=EY729288; organism=Citrus sinensis; type=EST; length=830bp
CACGCGTCCGCTCTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCG
CCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAA
AAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGTTG
GATGGCTGGGGCGAGTTCAAGCCCGACAAGTATAACTGCATCCATGTCGC
CGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCCCCTGGGAGGTGGA
GGTTGCTCCGAGCTCACGGTAGTGCTGTGGGGCTTCCAACTGAAGATGAC
ATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTT
TGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCT
ATCAAGATGAGGGATTTAATTACATTAAGCCATCTTTTGAAACCGGCACA
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTANGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATGCTTACTGACGGGCGTGATGTTTTGGATGGTTCAANC
GTAGGATTCGTAAAAACTATTGAGAAAGATCTTGCAGAATTGCGTTGGGA
AAGGTGTTGACCCGCAGATTGCATCTGGAGGGAGGCGGATGTTCCTCCCC
ATGGACCGTTATGAGAATGATTGGGATGTTGGCAACCAAGGATGGGATGC
CCCCCTCTTGGGAGAGCGTCCCCACGGTTTACAGCCCCGTTGAGACGTGC
AAGAAGCGAGGGAGCACCCAGATGCAGTGA
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