EY729288

Overview
NameEY729288
Unique NameEY729288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_BACST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus stearothermophilus GN=gpmI PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.512e-23
Identity = 69/174 (39.66%), Postives = 101/174 (58.05%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGT-LHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAE 639
            VA+++LDG+        N +  A+ P  D +    P     L+A G AVGLP E  MGNSEVGH  +GAGRI  Q    +++A+  G+  ++E F    N++K   + GT LHL GLLSDGGVHS +  L  LL+ A++ G KR+ +H   DGRDV   +   ++K +++ + E
Sbjct:    6 VALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHT--TLKACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVK---QHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKE 173          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_AKKM8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.743e-23
Identity = 72/177 (40.68%), Postives = 97/177 (54.80%), Query Frame = 1
Query:  115 LSRNNIVAVVVLDGWGE--FKPD---KYNCIHV-ADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEK 627
            +S    V +V+ DGWG     PD   +Y    V ADTP  D    + P    LL A G  VGLP +  MGNSEVGH  LGAGR+  Q    VD A+  G + ++           +  LHL+GL+SDGGVHS ++ L  ++K A E G + I +H +TDGRD    S VGF++ +E+
Sbjct:    1 MSSKKPVVLVIRDGWGRNPLGPDVAKEYGDATVLADTPFTDYLLANYPHS--LLGASGEDVGLP-DGQMGNSEVGHLNLGAGRVVFQDLCRVDNAIKDGSMGENAVLKTAFSQAASSRLHLLGLVSDGGVHSHINHLIGIVKYAYEAGVRDICIHAITDGRDCSPTSGVGFIRQLEE 174          

HSP 2 Score: 23.483 bits (49), Expect = 1.743e-23
Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = 2
Query:  692 FLPMDRYENDWDVGNQGWDAPLLG 763
            F  MDR +  WD     WDA +LG
Sbjct:  190 FYAMDR-DKRWDRNKLAWDAIVLG 212          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_HALOH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.974e-23
Identity = 68/180 (37.78%), Postives = 104/180 (57.78%), Query Frame = 1
Query:  115 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN----YIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            ++R   +A++++DG+G  +    N I  A TP +D F +  P    +L A G AVGLP E  MGNSEVGH  LGAGRI  Q    ++ A+  G + +++       ++K +     LHL+GLLSDGGVHS ++ L  LL+ A  +  +++ +H + DGRD    S   ++  +E+ LAEL
Sbjct:    1 MNRPKPLALIIMDGFGLSEKSDGNAIKQAHTPNLDKFFEEYPDT--VLDASGEAVGLP-EGQMGNSEVGHLNLGAGRIVYQDYTRINKAIEEGTLPENDALKNAIQHVKDN--NSALHLMGLLSDGGVHSHINHLFGLLEMARVKNIEKVYVHPILDGRDTPPRSAEKYLNQLEEKLAEL 175          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_CLOTE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium tetani GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.974e-23
Identity = 64/172 (37.21%), Postives = 95/172 (55.23%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            V +++LDG+G    +  N + +A+ P  D   +  P     L+A G  VGLP E  MGNSEVGH  +G+GR+  Q    +   +  G  +++   NY   +      +LHL+GLLSDGGVHS +D L+ +LK A ++G  R+ +H   DGRDV   S   ++  IE  + EL
Sbjct:    6 VMLMILDGFGITNHEDGNAVKMANKPNFDKLLREYPHTQ--LKASGLNVGLP-EGQMGNSEVGHLNIGSGRVIYQELTRITKDINDGVFFENTEINYAIDEAIKNNSSLHLLGLLSDGGVHSHIDHLKAILKLAKDKGLNRVYVHAFLDGRDVPPSSAKEYIINIENYMKEL 174          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_CLOK5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.974e-23
Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF--ETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            V +++LDG+G  K D  N +  A  P +D + K  P     L A G +VGLP E  MGNSEVGH  +GAGRI  Q    +  ++  G+ +++E  N    +       LHL+GL+S GGVHS  + L+ LL+ A ++GA R+ +H  TDGRDV   S   ++  +EK + ++
Sbjct:    6 VMLMILDGFGISKIDNGNAVKAAYKPNLDKYFKKYPHTE--LGASGLSVGLP-EGQMGNSEVGHLNIGAGRIVYQALTRITKSINEGQFFKNEVLNSAVDNAVKNNSDLHLLGLVSPGGVHSHTNHLKGLLQLAKQKGASRVYIHAFTDGRDVPPSSAYMYIDDMEKYIQKI 174          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_CLOB1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.974e-23
Identity = 65/172 (37.79%), Postives = 96/172 (55.81%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            V +++LDG+G       N +  A+ P +D+  K  P     L A G  VGLP E  MGNSEVGH  +GAGRI  Q    +  +++ G  +++   N    + +    TLHL+GLLS GGVHS +D L+ L+K A E+  K++ +H   DGRDV   S   +++ IE  + E+
Sbjct:    6 VVLMILDGFGLTNKVDGNAVSAANKPNLDNILKKYPHTQ--LGASGMDVGLP-EGQMGNSEVGHLNIGAGRIVYQALTKITKSISDGDFFENVALNKAIENVKKNNSTLHLLGLLSPGGVHSHIDHLKGLIKLAKEKDIKKVYIHAFLDGRDVAPSSAKEYIEDIENYMNEI 174          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_BACSK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus clausii (strain KSM-K16) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.974e-23
Identity = 66/174 (37.93%), Postives = 99/174 (56.90%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            VA+++LDG+G  + +K N +  A  P  D +    P     LRA G  VGLP E  MGNSEVGH  +GAGRI  Q    V+L++  G  +++E F    +++K   +   LH+ GLLSDGG+HS +D +  LL  A ++  +R+ +H   DGRDV   S   ++K ++    E+
Sbjct:    6 VALIILDGFGLREEEKGNAVAHAQKPNFDRYWNEFPHA--TLRADGENVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNLSIREGDFFKNETFIKAMDHVKE--KQSALHIYGLLSDGGIHSHIDHIYALLDMAKQQNVERVYVHGFLDGRDVGPTSAEVYLKGLQDKFDEV 174          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI2_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.974e-23
Identity = 61/164 (37.20%), Postives = 94/164 (57.32%), Query Frame = 1
Query:  139 VVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKP-SFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIE 624
            +++ DGWG  +  + N +  A TP +D  +K  P  W  L+A G AVGLP +  MGNSEVGH  +GAGRI  Q    +++++ +G  +++  F N I        +LHL+GL S GG+HS +  L  LLK   E+  K++ +H   DGRD    + +G +K ++
Sbjct:   10 LIIFDGWGYREAKEGNAVMTARTPNLDRLEKECP--WCFLKASGEAVGLP-KGMMGNSEVGHLTIGAGRIVNQDLTRINISIKNGDFFKNPVFLNAISNVKANASSLHLMGLASCGGIHSYMPHLHALLKLVQEKDLKKVYIHAFLDGRDEPPKAALGDIKKLD 170          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_PSEMY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas mendocina (strain ymp) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.579e-23
Identity = 64/172 (37.21%), Postives = 94/172 (54.65%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            + +++LDG+G     +YN IH A TP  D  + + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ + +   N  +  +   G  +H++GLLSDGGVHS  D +  + + A+ RGA++I LH   DGRD    S    ++ ++   A L
Sbjct:    8 LVLIILDGFGHSDKPEYNAIHAASTPVYDRLRATYPHG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFDNAAINQAVDKAVAAGKAVHILGLLSDGGVHSHQDHIVAMAELAARRGAEKIYLHAFLDGRDTPPKSAQPSIELLDAAFARL 176          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_ACIBL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Acidobacteria bacterium (strain Ellin345) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.579e-23
Identity = 62/170 (36.47%), Postives = 92/170 (54.12%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAE 639
            + +++LDGWG   P   N I +A  P  D      P    L+   G  VGLP    MGNSEVGH  +GAGR+       +DLA+ +  +++++   + +K +     LH  GLLSDGGVHS  + L  LL+ A E G +R+ +H   DGRD L  + V +V  +++ + E
Sbjct:    7 LVLIILDGWGYAPPSNANAISLARKPNYDKLLTDFPNT--LIHTSGRYVGLPP-GQMGNSEVGHLNIGAGRVVYMDITKIDLAIENKSLFKNQTLLDAMKHAANGRQLHFFGLLSDGGVHSHQNHLYALLRMAKENGVERVFVHPFMDGRDTLPTNGVKYVDQLQQKMRE 173          
The following BLAST results are available for this feature:
BLAST of EY729288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_BACST1.512e-2339.662,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AKKM81.743e-2340.682,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALOH1.974e-2337.782,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOTE1.974e-2337.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOK51.974e-2338.372,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOB11.974e-2337.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACSK1.974e-2337.932,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI2_METBF1.974e-2337.202,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEMY2.579e-2337.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ACIBL2.579e-2336.472,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-A03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729288 ID=EY729288; Name=EY729288; organism=Citrus sinensis; type=EST; length=830bp
CACGCGTCCGCTCTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCG
CCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAA
AAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGTTG
GATGGCTGGGGCGAGTTCAAGCCCGACAAGTATAACTGCATCCATGTCGC
CGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCCCCTGGGAGGTGGA
GGTTGCTCCGAGCTCACGGTAGTGCTGTGGGGCTTCCAACTGAAGATGAC
ATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTT
TGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCT
ATCAAGATGAGGGATTTAATTACATTAAGCCATCTTTTGAAACCGGCACA
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTANGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATGCTTACTGACGGGCGTGATGTTTTGGATGGTTCAANC
GTAGGATTCGTAAAAACTATTGAGAAAGATCTTGCAGAATTGCGTTGGGA
AAGGTGTTGACCCGCAGATTGCATCTGGAGGGAGGCGGATGTTCCTCCCC
ATGGACCGTTATGAGAATGATTGGGATGTTGGCAACCAAGGATGGGATGC
CCCCCTCTTGGGAGAGCGTCCCCACGGTTTACAGCCCCGTTGAGACGTGC
AAGAAGCGAGGGAGCACCCAGATGCAGTGA
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