EY729288

Overview
NameEY729288
Unique NameEY729288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY729288_ssr14 microsatellite EY729288_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12501 contig Csv1_Contig12501:14..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_VIBFM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio fischeri (strain MJ11) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.745e-23
Identity = 66/178 (37.08%), Postives = 100/178 (56.18%), Query Frame = 1
Query:  115 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            +S    +A+V+LDG+G  +    N I  A+TP +D    + P    L+ A G  VGLP +  MGNSEVGH  +GAGR+  Q    +  A++ G+  Q+E   N I  + + G  +H++GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD    S    +K  ++  A+L
Sbjct:    1 MSAKKPMALVILDGYGHRETQADNAITNANTPVLDGLMANQPNT--LISASGMDVGLP-DGQMGNSEVGHTNIGAGRVVYQDLTRITKAISDGEFQQNETLVNAIDKAVKAGKAVHIMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAENSLKNFQELFAKL 175          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_VIBF1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.745e-23
Identity = 66/178 (37.08%), Postives = 100/178 (56.18%), Query Frame = 1
Query:  115 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            +S    +A+V+LDG+G  +    N I  A+TP +D    + P    L+ A G  VGLP +  MGNSEVGH  +GAGR+  Q    +  A++ G+  Q+E   N I  + + G  +H++GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD    S    +K  ++  A+L
Sbjct:    1 MSAKKPMALVILDGYGHRETQADNAITNANTPVLDGLMANQPNT--LISASGMDVGLP-DGQMGNSEVGHTNIGAGRVVYQDLTRITKAISDGEFQQNETLVNAIDKAVKAGKAVHIMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAENSLKNFQELFAKL 175          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_SYNJA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain JA-3-3Ab) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.745e-23
Identity = 71/176 (40.34%), Postives = 99/176 (56.25%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAELRW 648
            V +V+LDGWG  +  + N +  A TP +DS   + P    LL+A G AVGLP+   MGNSEVGH  LGAGR+  Q    +  A+ +G ++ +    E  + +K   + G  H IGL S+GGVHS +D L  LLK A++ G     +H +TDGRD L       +  +EK   EL+W
Sbjct:    9 VVLVILDGWGYREAPEGNAVLAARTPVVDSLWATYPHT--LLQASGRAVGLPS-GQMGNSEVGHLTLGAGRVVPQELVRISDAIETGSLFHEPLLVEVCHRLKE--QGGRFHFIGLCSEGGVHSHIDHLYGLLKLAAQAGIPAY-VHAITDGRDTLPRDGARVLAALEK---ELQW 175          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_NATPD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.745e-23
Identity = 66/171 (38.60%), Postives = 95/171 (55.56%), Query Frame = 1
Query:  136 AVVVLDGWGEFKPDKYNCIHVADTPTMDSF-KKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAE 639
            A+V+LDGWG    D+ + +  ADTP  D+  ++ A G+   L  HG +VGLP +  MGNSEVGH  +GAGR+  Q +  V   + +G    +E     +       G +H +GL+SDGGVHS    L  L+  A+ERG + +  H  TDGRD    S VGF++ +   + E
Sbjct:    4 ALVILDGWGLGDGDETDAVAAADTPAFDALAERGATGQ---LETHGRSVGLP-DGQMGNSEVGHLNIGAGRVVKQDSTRVTDDIDAGVFADNEALARAFDHADDHDGRVHFMGLVSDGGVHSYQSHLHALVDLAAERGVEAV-THAFTDGRDTAPKSGVGFIEDLAATVEE 169          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 7424) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.745e-23
Identity = 70/172 (40.70%), Postives = 92/172 (53.49%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            V +V+LDGWG  +   YN I VA+TP MDS  ++ P    L+R  G  VGLP E  MGNSEVGH  +GAGRI  Q    +  A+  G I+Q      +    +   G LHLIGL S GGVHS L  L  LL  A       + +H +TDGRD      V  ++ I+  + ++
Sbjct:    9 VVLVILDGWGYRQTTDYNAIAVANTPVMDSLWEAYPKT--LIRTSGKDVGLP-EGQMGNSEVGHLNIGAGRIVPQELVRITDAIEDGSIFQSPVLINLCDEVKGRGGKLHLIGLSSAGGVHSHLCHLLGLLDLAKLHSVSDVCVHAITDGRDTNPTEGVNVIEAIQAHIDKI 177          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI1_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.745e-23
Identity = 60/151 (39.74%), Postives = 85/151 (56.29%), Query Frame = 1
Query:  139 VVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDV 585
            +++LDGWG  +  + N I  A TP +D   +  P  W  L A G AVGLP E  MGNSEVGH  +GAGRI  Q    ++ ++  G  +++  F            +LHL+GL+S GGVHS +  +  L+K A + G K++ +H   DGRDV
Sbjct:   13 LIILDGWGYREAREGNAILAARTPNLDHLIEEYP--WCFLEASGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQDLTRINFSIRKGDFFKNPAFLGAISNAKANDSSLHLMGLVSYGGVHSYMAHIHALIKLAQQEGVKKVYIHAFLDGRDV 160          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_PSEE4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas entomophila (strain L48) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.799e-23
Identity = 63/172 (36.63%), Postives = 96/172 (55.81%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            + +++LDG+G  +  +YN I  A+TP  D  + + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ +++        K +     +H++GLLSDGGVHS  D L  + + A++RGA++I LH   DGRD    S    ++ ++   A+L
Sbjct:    8 LVLIILDGFGHSESPEYNAIFAANTPVYDRLRATQPHG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPVLTGAVDKAASAGKAVHILGLLSDGGVHSHQDHLIAMAELAAQRGAEKIYLHAFLDGRDTPPRSAQSSIELLDATFAKL 176          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_PHOPR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Photobacterium profundum GN=gpmI PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.280e-22
Identity = 65/178 (36.52%), Postives = 99/178 (55.62%), Query Frame = 1
Query:  115 LSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            +S    +A+V+LDGWG  + +  N I  A+TP MDS   +      L+ A G  VGLP +  MGNSEVGH  +GAGR+  Q    +  ++A G  +++E     +  +   G  +H++GL+S GGVHS  D +   ++ A++RGA++I LH   DGRD    S    ++  +   AEL
Sbjct:    1 MSAKKPLALVILDGWGYREDNSDNAIANANTPVMDSLIANEANT--LISASGFDVGLP-DGQMGNSEVGHTNIGAGRVVYQDLTRITKSIADGDFFENEALTTAMDKAINAGKAVHIMGLMSPGGVHSHEDHIAAAIEMAAKRGAEKIYLHCFLDGRDTPPRSAQNSLERFDALFAEL 175          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_MICAN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Microcystis aeruginosa (strain NIES-843) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.280e-22
Identity = 70/178 (39.33%), Postives = 97/178 (54.49%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAELRWER 654
            V +V+LDGWG       N I +A TP MDS  +  P    L+R     VGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I Q++        I+P  +   LHLIGL S+GGVHS LD L  LL  A  +G   + +H++TDGRD      +  +K I++ + +++  R
Sbjct:    9 VVLVILDGWGYRPQRSDNAIAMAKTPIMDSLWEVYPHT--LIRTSAKDVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAIEDGSIQQNQALLKLCAEIRP--KKSKLHLIGLCSEGGVHSHLDHLLGLLDLAKVQGISDVCIHVITDGRDTNVTDGMPAIKRIQEHINKIKLGR 181          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_SYNJB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.671e-22
Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAELRW 648
            V +V+LDGWG       N +  A+TP +DS   + P    LL+A G AVGLP    MGNSEVGH  LGAGR+  Q    +  A+ +G ++QD     +        G  H +GL S+GGVHS +D L  LLK A++       +H +TDGRD L       +  +EK   EL+W
Sbjct:    9 VVLVILDGWGYRDALDGNAVLAAETPVLDSLWAAYPHT--LLQASGRAVGLPA-GQMGNSEVGHLTLGAGRVVPQELVRISDAIETGSLFQDPLLMQVCRQLRERGGRFHFVGLCSEGGVHSHIDHLYGLLKLAAQAEIPAY-VHAITDGRDTLPRDGARVLAALEK---ELQW 175          
The following BLAST results are available for this feature:
BLAST of EY729288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_VIBFM5.745e-2337.082,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBF15.745e-2337.082,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNJA5.745e-2340.342,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_NATPD5.745e-2338.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP75.745e-2340.702,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METBF5.745e-2339.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEE49.799e-2336.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PHOPR1.280e-2236.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MICAN1.280e-2239.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNJB1.671e-2239.662,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-A03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729288 ID=EY729288; Name=EY729288; organism=Citrus sinensis; type=EST; length=830bp
CACGCGTCCGCTCTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCG
CCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAA
AAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGTTG
GATGGCTGGGGCGAGTTCAAGCCCGACAAGTATAACTGCATCCATGTCGC
CGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCCCCTGGGAGGTGGA
GGTTGCTCCGAGCTCACGGTAGTGCTGTGGGGCTTCCAACTGAAGATGAC
ATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTT
TGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCT
ATCAAGATGAGGGATTTAATTACATTAAGCCATCTTTTGAAACCGGCACA
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTANGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATGCTTACTGACGGGCGTGATGTTTTGGATGGTTCAANC
GTAGGATTCGTAAAAACTATTGAGAAAGATCTTGCAGAATTGCGTTGGGA
AAGGTGTTGACCCGCAGATTGCATCTGGAGGGAGGCGGATGTTCCTCCCC
ATGGACCGTTATGAGAATGATTGGGATGTTGGCAACCAAGGATGGGATGC
CCCCCTCTTGGGAGAGCGTCCCCACGGTTTACAGCCCCGTTGAGACGTGC
AAGAAGCGAGGGAGCACCCAGATGCAGTGA
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