EY729288

Overview
NameEY729288
Unique NameEY729288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY729288_ssr14 microsatellite EY729288_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12501 contig Csv1_Contig12501:14..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_BACAH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus thuringiensis (strain Al Hakam) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.671e-22
Identity = 66/152 (43.42%), Postives = 91/152 (59.87%), Query Frame = 1
Query:  136 AVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDV 585
            A+++LDG+G  +    N +  A  P  D +    P     L A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F + IK   E GT LHL GLLSDGGVHS ++ +  LL+ A++ G +++ +H   DGRDV
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDV 154          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_SILPO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter pomeroyi GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.183e-22
Identity = 64/169 (37.87%), Postives = 89/169 (52.66%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDL 633
            V + +LDGWG       N  ++A TPT D+     P   RL+  HG  VGLP+   MGNSEVGH  +GAGR+ A     +DLA+  G  + +        +     GT HL+GL+SDGGVH  L+ +    +  +  G   + +H +TDGRDV   S  GF+  +E  L
Sbjct:    7 VVLCILDGWGLSDDKTANAPYLAKTPTFDAIMTKGPHA-RLI-THGPDVGLPS-GQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEDGSFFDNAALRDFIARTRAAGGTAHLMGLVSDGGVHGHLNHIIAAAQAITNAGVP-VVMHAITDGRDVAPKSAYGFMAELEDRL 171          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_PSYA2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.183e-22
Identity = 63/170 (37.06%), Postives = 93/170 (54.71%), Query Frame = 1
Query:  139 VVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            +++LDG+G  + DK N I  AD P +D   +  P    L+ A G  VGLP +   GNSEVGH  LGAGR+  Q +  +   +AS   Y++E   N +K +   G  +H++GLLSDGGVHS  D ++ +   A   GAK + +H   DGRD    S   ++  +   + +L
Sbjct:   34 LMILDGFGHREDDKDNAIAAADMPNLDKIYEQYPHG--LISASGEDVGLP-DGQFGNSEVGHMNLGAGRVLYQDSTRISSEVASRDFYKNEALVNAVKAANTLGGNVHIMGLLSDGGVHSNQDHIEAMCHSALVHGAKNVFVHCFLDGRDTPPKSADKYINRLRDHIIKL 200          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_CLOTH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.183e-22
Identity = 63/176 (35.80%), Postives = 95/176 (53.98%), Query Frame = 1
Query:  121 RNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            ++ +V +++LDG+G     + N I  A+ P +D F +  P    ++R  G  VGLP +  MGNSEVGH  +GAGRI  Q    +  ++  G  ++ + F     +       LHL GLLSDGGVHS    L  LL+ A  +  K + +H   DGRDV   S +G+V+ +E  + E+
Sbjct:    2 KDKLVMLIILDGYGINPRKEGNAIEAANKPNIDRFMREYPNT--IVRTSGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQELTRITKSIQDGDFFEKKEFLDAAENCRKHNSKLHLFGLLSDGGVHSHNTHLYGLLEFAKRQNLKDVYVHCFFDGRDVPPDSAMGYVEELENKIREI 174          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_PELCD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.851e-22
Identity = 62/172 (36.05%), Postives = 94/172 (54.65%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF--ETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            VA+V+LDGWG     ++N +  ADTP + +  +S P     + A G  VGLP +  MGNSEVGH  +GAGR   Q    + L++     +++     +        G LHL+GLLSDGGVHS ++ L  L++ A   G +++ +H   DGRD    S  G++  +E  L ++
Sbjct:    9 VALVILDGWGINPVCEHNAVCQADTPRLRALLESWPHA--RIGASGRDVGLP-DGQMGNSEVGHLNIGAGRTVYQDLTRISLSIEEDTFFENTELRKVMQQVVESQGKLHLMGLLSDGGVHSHMEHLYALVEMARRAGVEQVCIHAFMDGRDTPPQSGAGYLAQLEDKLQDI 177          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_FLAJ1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.851e-22
Identity = 65/171 (38.01%), Postives = 96/171 (56.14%), Query Frame = 1
Query:  124 NNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDE----GFNYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIE 624
            N  V +++LDGWG+    K + I  A+ P ++S  K+ P     LR  G  VGLP E  MGNSEVGH  LGAGRI  Q    ++LA+A   + +++     F Y K + +   +H +GL+SDGGVHS    L+ L+  + E G  ++ +H  TDGRDV   S   ++  ++
Sbjct:    2 NKKVILMILDGWGKSPDPKVSAIDNANVPFINSLYKNYPSAQ--LRTDGLNVGLP-EGQMGNSEVGHMNLGAGRIVYQDLAKINLAVAHKTLAKEQVLIDAFTYAKENNKK--VHFLGLVSDGGVHSHTSHLRGLIDASQEYGLDQVYVHAFTDGRDVDPKSGAKYIHDLQ 167          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 8801) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.851e-22
Identity = 68/172 (39.53%), Postives = 90/172 (52.33%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            V +V+LDGWG  +  + N I +A TP MD    S P    L+   G  VGLP    MGNSEVGH  LGAGRI  Q    +  A+    + ++     I          LHLIGL SDGGVHS LD L  LL+ A E+   ++ +H++TDGRD      +  V  +E  + E+
Sbjct:    9 VVLVILDGWGYRQSTEANAIALAKTPVMDCLWTSYPRT--LIHTSGKDVGLPN-GQMGNSEVGHLNLGAGRIVPQELVRISDAVEDKSLLRNPALVNICQEVRDRQSKLHLIGLCSDGGVHSHLDHLIGLLELAKEQHLDQVCIHVITDGRDTNTNEGINAVAKLESSIKEI 177          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mycoides subsp. mycoides SC GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.724e-22
Identity = 67/174 (38.51%), Postives = 94/174 (54.02%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEG----FNYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            V + +LDGWG  +PDK N +  A+   ++  KK+ P  W    A G  VGLP E+ MGNSEVGH  LGAGRI  +    ++    +  I +++     F Y+K +     LHL+GL S+GGVHS  D +  + K A + G   I+  ++TDGRD        F+    KDL EL
Sbjct:    7 VLLAILDGWGISEPDKGNAVDNANMVFVEYLKKTYP--WLKAHASGKWVGLP-ENQMGNSEVGHIHLGAGRINLESLAKLNHETKTNNIAKNDEIVKTFEYVKKN--NSALHLMGLFSNGGVHSHFDHMIAIYKAAIDYGITNIKFDLITDGRDTKPKLAYDFI----KDLLEL 171          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_BACP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus pumilus (strain SAFR-032) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.724e-22
Identity = 67/173 (38.73%), Postives = 96/173 (55.49%), Query Frame = 1
Query:  136 AVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIEKDLAEL 642
            A+++LDG+G       N +  A  P  D +    P +   L A G AVGLP +  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F     Y K + +   LHL GLLSDGGVHS +  L  LLK A + G  ++ +H   DGRDV   +   ++K +E+ + E+
Sbjct:    7 ALIILDGFGLRGETVGNAVAQAKKPNFDRYWNEFPHQ--TLTASGEAVGLP-QGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIRDGEFEKNETFLEAMTYAKENDKA--LHLFGLLSDGGVHSHIQHLFALLKLAKKEGLTKVYIHGFLDGRDVGQKTAKVYLKQLEEQIKEI 174          
BLAST of EY729288 vs. ExPASy Swiss-Prot
Match: GPMI_SYNP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.863e-22
Identity = 66/168 (39.29%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  133 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGT----LHLIGLLSDGGVHSXLDQLQLLLKGASERGAKRIRLHMLTDGRDVLDGSXVGFVKTIE 624
            V +V+LDGWG  +    N I  A+TP +D+F  + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    +  A+  G   +++    +K   ET      LHLIGL SDGGVHS L+ L  LL  A   G   + +H +TDGRD      + +++ I+
Sbjct:    9 VVLVILDGWGYRQEANANAIAAANTPNVDAFFATYPST--LIHTSGKRVGLP-DGQMGNSEVGHLNLGAGRVVPQELVRISDAIEDGSFLRNDVL--VKVCRETRQAGKKLHLIGLCSDGGVHSHLNHLLGLLDLAKVNGIADVHIHAITDGRDTNTTEGINYLQQIQ 171          
The following BLAST results are available for this feature:
BLAST of EY729288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_BACAH1.671e-2243.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SILPO2.183e-2237.872,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSYA22.183e-2237.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOTH2.183e-2235.802,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PELCD2.851e-2236.052,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FLAJ12.851e-2238.012,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP82.851e-2239.532,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCMS3.724e-2238.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACP23.724e-2238.732,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNP24.863e-2239.292,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-A03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729288 ID=EY729288; Name=EY729288; organism=Citrus sinensis; type=EST; length=830bp
CACGCGTCCGCTCTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCG
CCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAA
AAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGTTG
GATGGCTGGGGCGAGTTCAAGCCCGACAAGTATAACTGCATCCATGTCGC
CGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCCCCTGGGAGGTGGA
GGTTGCTCCGAGCTCACGGTAGTGCTGTGGGGCTTCCAACTGAAGATGAC
ATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTT
TGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCT
ATCAAGATGAGGGATTTAATTACATTAAGCCATCTTTTGAAACCGGCACA
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTANGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATGCTTACTGACGGGCGTGATGTTTTGGATGGTTCAANC
GTAGGATTCGTAAAAACTATTGAGAAAGATCTTGCAGAATTGCGTTGGGA
AAGGTGTTGACCCGCAGATTGCATCTGGAGGGAGGCGGATGTTCCTCCCC
ATGGACCGTTATGAGAATGATTGGGATGTTGGCAACCAAGGATGGGATGC
CCCCCTCTTGGGAGAGCGTCCCCACGGTTTACAGCCCCGTTGAGACGTGC
AAGAAGCGAGGGAGCACCCAGATGCAGTGA
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