EY729165

Overview
NameEY729165
Unique NameEY729165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE6_HUMAN (Copine-6 OS=Homo sapiens GN=CPNE6 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.657e-18
Identity = 73/227 (32.16%), Postives = 108/227 (47.58%), Query Frame = 2
Query:   47 NNRSLHAIGDT-PNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEV-----FSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIV--EKSGGQ---YHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDK---------IPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            +++SLH +    PN Y +A+  +G     +D D   P FGFG     + EV      +F  ++  C     V+A YR  +P ++L GPT+ AP++    +    E+S GQ   Y VL+++ DG V            S   +T  +IV AS  P+SI++VGVG+  + DM+  D           +PA   D  QFV F     K+A PS    A A   L E+P Q
Sbjct:  322 SSQSLHCLSPRQPNHYLQALRAVGGICQDYDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPIINRVAEPAQREQSTGQATKYSVLLVLTDGVV------------SDMAETRTAIVRASRLPMSIIIVGVGNADFSDMRLLDGDDGPLRCPRGVPAAR-DIVQFVPFRDF--KDAAPS----ALAKCVLAEVPRQ 529          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE6_PONAB (Copine-6 OS=Pongo abelii GN=CPNE6 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.470e-18
Identity = 73/227 (32.16%), Postives = 108/227 (47.58%), Query Frame = 2
Query:   47 NNRSLHAIGDT-PNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEV-----FSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIV--EKSGGQ---YHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDK---------IPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            +++SLH +    PN Y +A+  +G     +D D   P FGFG     + EV      +F  ++  C     V+A YR  +P ++L GPT+ AP++    +    E+S GQ   Y VL+++ DG V            S   +T  +IV AS  P+SI++VGVG+  + DM+  D           +PA   D  QFV F     K+A PS    A A   L E+P Q
Sbjct:  322 SSQSLHCLSPRQPNHYLQALRAVGGICQDYDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPIINRVAEPAQREQSTGQATKYSVLLVLTDGVV------------SDMAETRTAIVRASRLPMSIIIVGVGNADFSDMRLLDGDDGPLRCPRGVPAAR-DIVQFVPFRDF--KDAAPS----ALAKRVLAEVPRQ 529          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE6_BOVIN (Copine-6 OS=Bos taurus GN=CPNE6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 74/227 (32.60%), Postives = 109/227 (48.02%), Query Frame = 2
Query:   47 NNRSLHAIGDT-PNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEV-----FSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVE--AAMDIVEKSGGQ---YHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDK---------IPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            +++SLH +    PN Y +A+  +G     +D D   P FGFG     + EV      +F  ++  C     V+A YR  +P ++L GPT+ AP++   A     E+S GQ   Y VL+++ DG V            S   +T  +IV AS  P+SI++VGVG+  + DM+  D           +PA   D  QFV F     K+A+PS    A A   L E+P Q
Sbjct:  322 SSQSLHCLSPRQPNHYLQALRAVGGICQDYDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPIINRVAGPAQREQSTGQATKYSVLLVLTDGVV------------SDMAETRTAIVRASRLPMSIIIVGVGNADFSDMRLLDGDDGTLRCPRGVPAAR-DIVQFVPFRDF--KDASPS----ALAKCVLAEVPRQ 529          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE3_MOUSE (Copine-3 OS=Mus musculus GN=Cpne3 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.919e-18
Identity = 66/220 (30.00%), Postives = 101/220 (45.91%), Query Frame = 2
Query:   56 SLHAIGDTP-NPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEV-----FSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVE-----AAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD-----KIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            SLH I     N Y  AI  +G  +  +D D + P FGFG       +V      +F+  +  C+G + ++  YR  +P +RL GPT+++P++      AA    +++  QY VL+II DG +T               +T ++IV A+  P+SI++VGVG   +  M+  D      + P+ E      V F         P E   A A   L EIP Q
Sbjct:  310 SLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRTCLPQIRLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVIT------------DLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDGDGGSLRAPSGEVAIRDIVQFVPFRQFQNAPKE---ALAQCVLAEIPQQ 514          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE9_RAT (Copine-9 OS=Rattus norvegicus GN=Cpne9 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.731e-18
Identity = 65/207 (31.40%), Postives = 99/207 (47.83%), Query Frame = 2
Query:   89 YEKAITIIGKTLAPFDEDNLIPCFGFG-----DATTHDQEVFSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEK--SGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD---KIPAR----EFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            Y  A+  +G+ +  +D D L P +GFG     +     Q   + +D+   C G E VL  Y   +  ++L GPT +APV+        K   G QY+VL+II DG +            S   +T ++IV+ASS P+SI++VGVG   +E M++ D    ++ +R    E D  QFV F   + ++          A   L EIP Q
Sbjct:  330 YAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNNDEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQVARAAAKISDGSQYYVLLIITDGVI------------SDMTQTKEAIVSASSLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDIVQFVPFRDYVDRSGNQVLSMARLAKDVLAEIPEQ 524          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE9_MOUSE (Copine-9 OS=Mus musculus GN=Cpne9 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.731e-18
Identity = 65/207 (31.40%), Postives = 99/207 (47.83%), Query Frame = 2
Query:   89 YEKAITIIGKTLAPFDEDNLIPCFGFG-----DATTHDQEVFSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEK--SGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD---KIPAR----EFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            Y  A+  +G+ +  +D D L P +GFG     +     Q   + +D+   C G E VL  Y   +  ++L GPT +APV+        K   G QY+VL+II DG +            S   +T ++IV+ASS P+SI++VGVG   +E M++ D    ++ +R    E D  QFV F   + ++          A   L EIP Q
Sbjct:  330 YAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNNDEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQVARAAAKISDGSQYYVLLIITDGVI------------SDMTQTKEAIVSASSLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDIVQFVPFRDYVDRSGNQVLSMARLAKDVLAEIPEQ 524          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE3_PONAB (Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.722e-17
Identity = 65/220 (29.55%), Postives = 102/220 (46.36%), Query Frame = 2
Query:   56 SLHAIGDTP-NPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEV-----FSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVE-----AAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD-----KIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            SLH I     N Y  A+  +G  +  +D D + P FGFG       +V      +F+  +  C+G + ++  YR+ +P ++L GPT+++P++      AA    +++  QY VL+II DG +T               +T ++IV AS  P+SI++VGVG   +  M+  D      + P+ E      V F         P E   A A   L EIP Q
Sbjct:  310 SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPIINHVARFAAAAAQQQTASQYFVLLIITDGVIT------------DLDETRQAIVNASRLPMSIIIVGVGGADFSAMEFLDGDGGGLRSPSGEVAIRDIVQFVPFRQFQNAPKE---ALAQCVLAEIPQQ 514          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE3_HUMAN (Copine-3 OS=Homo sapiens GN=CPNE3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 65/220 (29.55%), Postives = 101/220 (45.91%), Query Frame = 2
Query:   56 SLHAIGDTP-NPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEV-----FSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVE-----AAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD-----KIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            SLH I     N Y  A+  +G  +  +D D + P FGFG       +V      +F+  +  C+G + ++  YR+ +P ++L GPT+++P++      AA    +++  QY VL+II DG +T               +T ++IV AS  P+SI++VGVG   +  M+  D      + P  E      V F         P E   A A   L EIP Q
Sbjct:  310 SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVIT------------DLDETRQAIVNASRLPMSIIIVGVGGADFSAMEFLDGDGGSLRSPLGEVAIRDIVQFVPFRQFQNAPKE---ALAQCVLAEIPQQ 514          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNA_DICDI (Copine-A OS=Dictyostelium discoideum GN=cpnA PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.904e-16
Identity = 63/209 (30.14%), Postives = 96/209 (45.93%), Query Frame = 2
Query:   83 NPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEV-----FSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIV----EKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQ----FVNFTAIMSKNATPSEKETAFALAALMEIPIQY 670
            N Y  AI  +G  + P+    LIP +GFG       EV      + +  +T C G   VL CY + +  ++L GPT +AP++  A         +S  +Y +L+II DG++  + N            TI +IV +S  PLSI++VGVG+  + +M   D    A +    +     V F A+      P+E     A   L EIP Q+
Sbjct:  315 NQYANAICSVGNVIVPYTTTPLIPVYGFGGIMPGQSEVSHCFPMTLNASNTLCCGVNGVLDCYYDNISKIQLHGPTYFAPLINMAARYASQGQSQSNQKYTILMIITDGEILDADN------------TIDAIVKSSGLPLSIIIVGVGNANFTNMNILDGDDAALQSGGVRAERDIVQFVAMRDYLNRPNE----LAAEVLREIPTQF 507          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE8_MOUSE (Copine-8 OS=Mus musculus GN=Cpne8 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.487e-16
Identity = 61/210 (29.05%), Postives = 97/210 (46.19%), Query Frame = 2
Query:   83 NPYEKAITIIGKTLAPFDEDNLIPCFGFG-----DATTHDQEVFSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVE--KSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD---KIPAR----EFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQY 670
            N Y  A+  +G+ +  +D D + P  GFG     D     +   + +  +  C G E V+  Y   + +++L GPT++APV+          K G QY VL+I+ DG +            S   +T +SIV AS  P+SI++VGVG   ++ M + D    ++ +R    E D  QFV F   + ++          A   L EIP Q+
Sbjct:  338 NAYGMALKAVGEIVQDYDSDKMFPALGFGAKLPPDGRISHEFALNGNPQNPYCDGIEGVMEAYYRSLKSVQLYGPTNFAPVINHVARYASSVKDGSQYFVLLIVTDGVI------------SDMAQTKESIVNASKLPMSIIIVGVGPAEFDAMVELDGDDVRVSSRGKYAERDIVQFVPFRDYIDRSGNHILSMARLAKDVLAEIPEQF 535          
The following BLAST results are available for this feature:
BLAST of EY729165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CPNE6_HUMAN2.657e-1832.16Copine-6 OS=Homo sapiens GN=CPNE6 PE=1 SV=3[more]
CPNE6_PONAB3.470e-1832.16Copine-6 OS=Pongo abelii GN=CPNE6 PE=2 SV=1[more]
CPNE6_BOVIN4.532e-1832.60Copine-6 OS=Bos taurus GN=CPNE6 PE=2 SV=1[more]
CPNE3_MOUSE5.919e-1830.00Copine-3 OS=Mus musculus GN=Cpne3 PE=1 SV=2[more]
CPNE9_RAT7.731e-1831.40Copine-9 OS=Rattus norvegicus GN=Cpne9 PE=2 SV=1[more]
CPNE9_MOUSE7.731e-1831.40Copine-9 OS=Mus musculus GN=Cpne9 PE=2 SV=1[more]
CPNE3_PONAB1.722e-1729.55Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1[more]
CPNE3_HUMAN2.938e-1729.55Copine-3 OS=Homo sapiens GN=CPNE3 PE=1 SV=1[more]
CPNA_DICDI1.904e-1630.14Copine-A OS=Dictyostelium discoideum GN=cpnA PE=2 ... [more]
CPNE8_MOUSE2.487e-1629.05Copine-8 OS=Mus musculus GN=Cpne8 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-013-D04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729165 ID=EY729165; Name=EY729165; organism=Citrus sinensis; type=EST; length=866bp
CCACGCGTCCGCTAAAAGCAATGAATGGACTGGCAAAGTTTCATTCAATA
ATCGGAGCCTTCATGCCATTGGCGACACACCTAATCCATATGAGAAAGCC
ATCACTATCATTGGAAAGACTCTGGCTCCATTTGATGAAGACAACTTAAT
TCCTTGTTTTGGTTTTGGTGATGCTACCACACATGATCAAGAAGTGTTTA
GTTTTCATGATGATCATACCCCGTGCCATGGTTTTGAAGAAGTTTTGGCC
TGCTATAGAAACATTGTTCCAAACTTGCGACTTGCAGGACCAACTTCTTA
TGCTCCGGTGGTTGAGGCTGCAATGGACATTGTGGAGAAGAGTGGAGGCC
AGTATCATGTTTTGGTTATCATTGCAGATGGCCAGGTTACAAGGAGTGTC
AATACAGGTGATGGAGAACTGAGTTCACAAGAACAGAAAACAATAAAGTC
AATTGTTGCTGCAAGTTCATATCCACTTTCCATTGTGCTTGTTGGAGTCG
GTGATGGACCTTGGGAAGACATGCAGAAATTTGATGACAAGATCCCTGCA
CGTGAATTTGATAATTTTCAGTTTGTTAATTTTACCGCCATTATGTCAAA
AAATGCAACTCCATCTGAGAAAGAAACAGCTTTTGCTCTTGCCGCTCTCA
TGGAGATACCTATTCAATACAAAGCTGCAGTAGAACTTGGTATTATGGGA
CGCACGACAGGGAGAGCNAAAGAAATAGCTCCACGACCTCCTCCAGCTCC
TTATTCTCGCCGTGCCCTGNCAGAACGTCAACCAGGCGGTGGTTCAACCC
CTGTNGCGGAAACCCAGGCTTGCCCATTTTGCTGACCATTGCAAAGGACT
TGGCCTTTGGCTGTGG
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