EY729162

Overview
NameEY729162
Unique NameEY729162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729162 vs. ExPASy Swiss-Prot
Match: STSY_CATRO (Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.439e-13
Identity = 56/188 (29.79%), Postives = 87/188 (46.28%), Query Frame = 1
Query:   49 WIKRLHKNGTWENWKXXXXXXXXXXXXXQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKFGLHNWGLDLL--EAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETIKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 597
            W K   +N T    +             + +++ + D    L  V +EG   T LA+ V G     L    +    G +YF+  S+       G++ +   +   G+L+KYDPS  ET++LL  L    G  +S D  ++VV E +  R +KYWL+G  K   E F+  +P  P NIK   DG FW++
Sbjct:   88 WNKAFCENSTDPEKRPLCGRTYDISYDYKNSQMYIVDGHYHLCVVGKEGGYATQLATSVQGVPFKWLYAVTVDQRTGIVYFTDVSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVAEFLSNRIVKYWLEGPKKGSAE-FLVTIP-NPGNIKRNSDGHFWVS 273          
BLAST of EY729162 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.410e-13
Identity = 51/164 (31.10%), Postives = 79/164 (48.17%), Query Frame = 1
Query:  142 EILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDL-IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETIKFRCLKYWLKGESKEQTEIFVENLPGGPDNIK-LAPDGSFWIAILQLSSPG 621
            ++ V DA  GL  +   G     +A  V G      D L +  T G +YF+  S+ FG  +    +      GK  KYDPS    ++L++ L  + G A+S D  +++V +  K    +YW+KG     +E F  N    PDNIK +   G+FW+A +  S+ G
Sbjct:  112 DLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFT-NSVSNPDNIKRIGSTGNFWVASVVNSATG 274          
The following BLAST results are available for this feature:
BLAST of EY729162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
STSY_CATRO6.439e-1329.79Strictosidine synthase OS=Catharanthus roseus GN=S... [more]
STS3_ARATH8.410e-1331.10Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-013-C11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729162 ID=EY729162; Name=EY729162; organism=Citrus sinensis; type=EST; length=934bp
CCACGCGTCCGCGGACGCGTGGGCCTTTATACGGCCACAAGAGATGGTTG
GATTAAAAGATTGCATAAAAATGGAACCTGGGAGAATTGGAAGCTGATTG
GGGGTGATACTTTACTTGGAATCACAACAACACAGGAAAATGAAATACTT
GTATGCGACGCAGATAAGGGTTTGCTTAAGGTTACAGAAGAGGGAGTAAC
AGTTCTTGCATCACATGTCAATGGATCCAGAATAAATTTGGCAGACGATC
TGATCGCGGCAACAGATGGGAGTATTTATTTTAGTGTGGCAAGCACCAAA
TTTGGGCTTCATAACTGGGGCCTAGACCTTCTCGAGGCGAAACCACACGG
AAAGCTGCTCAAATATGATCCTTCATTGAATGAAACATCGATTCTGCTTG
ATAGTTTGTTCTTCGCTAATGGCGTTGCACTCTCGAAAGATGAAGACTAT
TTAGTTGTCTGTGAAACGATTAAATTCAGGTGCCTTAAGTATTGGCTGAA
GGGCGAGAGTAAAGAACAAACAGAAATTTTTGTCGAAAACCTTCCAGGCG
GACCTGATAACATCAAACTCGCCCCAGATGGCTCTTTCTGGATCGCGATA
CTGCAGTTGAGTTCTCCAGGGCTAGAGTTTGTGCACACTTCCAAGGCAAC
CAAACATCTGCTANCAGCATTTCCANAACTAAATCAGCTGGTTGCCCCCT
TGCACAAGAAAGCGGCAGTAGTAAACGTTGCGGCAAATGGCATTGTAATC
AGAAAGTTTGAAGATCCTNNATGAAAGGTGATGTCCTTTGTGACTTCTGC
NTTGGAGTTTGATGATCATCTCTACTTGGGCAAGCCTCACACCAACTTCA
TCGGGAAACTGGCTCTGAAAGCTACATAATGGTCCGAATCGCTCAGGAAA
ATGGTTTCTCCACCGACAAAAGGGGAACCAATCT
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