EY729156

Overview
NameEY729156
Unique NameEY729156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729156 vs. ExPASy Swiss-Prot
Match: IF4A3_RAT (Eukaryotic initiation factor 4A-III OS=Rattus norvegicus GN=Eif4a3 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.652e-36
Identity = 85/246 (34.55%), Postives = 138/246 (56.10%), Query Frame = 3
Query:   87 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYTNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVXFDLPNDIDDYVHRIGRTGRAGKSGL 821
            GG  + + +R+L+ G  ++  TPGR+ D++ R  +  + I+ L LDEAD ML+ GF+ QI  + + +    P   Q +L SAT P EI  + + F+ + I + V R   + + I Q    V   + K   L DL                ++F  TK+  D L   +    F  +++HGD  Q+ERE  ++ F+SG + +L++TDV ARGLD+P V+ ++ +DLPN+ + Y+HRIGR+GR G+ G+
Sbjct:  142 GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL----PPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA-------VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 376          
BLAST of EY729156 vs. ExPASy Swiss-Prot
Match: IF4A3_PIG (Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.652e-36
Identity = 85/246 (34.55%), Postives = 138/246 (56.10%), Query Frame = 3
Query:   87 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYTNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVXFDLPNDIDDYVHRIGRTGRAGKSGL 821
            GG  + + +R+L+ G  ++  TPGR+ D++ R  +  + I+ L LDEAD ML+ GF+ QI  + + +    P   Q +L SAT P EI  + + F+ + I + V R   + + I Q    V   + K   L DL                ++F  TK+  D L   +    F  +++HGD  Q+ERE  ++ F+SG + +L++TDV ARGLD+P V+ ++ +DLPN+ + Y+HRIGR+GR G+ G+
Sbjct:  142 GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL----PPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA-------VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 376          
BLAST of EY729156 vs. ExPASy Swiss-Prot
Match: IF4A3_MOUSE (Eukaryotic initiation factor 4A-III OS=Mus musculus GN=Eif4a3 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 8.652e-36
Identity = 85/246 (34.55%), Postives = 138/246 (56.10%), Query Frame = 3
Query:   87 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYTNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVXFDLPNDIDDYVHRIGRTGRAGKSGL 821
            GG  + + +R+L+ G  ++  TPGR+ D++ R  +  + I+ L LDEAD ML+ GF+ QI  + + +    P   Q +L SAT P EI  + + F+ + I + V R   + + I Q    V   + K   L DL                ++F  TK+  D L   +    F  +++HGD  Q+ERE  ++ F+SG + +L++TDV ARGLD+P V+ ++ +DLPN+ + Y+HRIGR+GR G+ G+
Sbjct:  142 GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL----PPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA-------VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 376          
BLAST of EY729156 vs. ExPASy Swiss-Prot
Match: IF4A3_MACFA (Eukaryotic initiation factor 4A-III OS=Macaca fascicularis GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 8.652e-36
Identity = 85/246 (34.55%), Postives = 138/246 (56.10%), Query Frame = 3
Query:   87 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYTNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVXFDLPNDIDDYVHRIGRTGRAGKSGL 821
            GG  + + +R+L+ G  ++  TPGR+ D++ R  +  + I+ L LDEAD ML+ GF+ QI  + + +    P   Q +L SAT P EI  + + F+ + I + V R   + + I Q    V   + K   L DL                ++F  TK+  D L   +    F  +++HGD  Q+ERE  ++ F+SG + +L++TDV ARGLD+P V+ ++ +DLPN+ + Y+HRIGR+GR G+ G+
Sbjct:  142 GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL----PPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA-------VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 376          
BLAST of EY729156 vs. ExPASy Swiss-Prot
Match: IF4A3_HUMAN (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4)

HSP 1 Score: 150.984 bits (380), Expect = 8.652e-36
Identity = 85/246 (34.55%), Postives = 138/246 (56.10%), Query Frame = 3
Query:   87 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYTNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVXFDLPNDIDDYVHRIGRTGRAGKSGL 821
            GG  + + +R+L+ G  ++  TPGR+ D++ R  +  + I+ L LDEAD ML+ GF+ QI  + + +    P   Q +L SAT P EI  + + F+ + I + V R   + + I Q    V   + K   L DL                ++F  TK+  D L   +    F  +++HGD  Q+ERE  ++ F+SG + +L++TDV ARGLD+P V+ ++ +DLPN+ + Y+HRIGR+GR G+ G+
Sbjct:  142 GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL----PPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA-------VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 376          
BLAST of EY729156 vs. ExPASy Swiss-Prot
Match: IF4A3_CHICK (Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.652e-36
Identity = 85/246 (34.55%), Postives = 138/246 (56.10%), Query Frame = 3
Query:   87 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYTNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVXFDLPNDIDDYVHRIGRTGRAGKSGL 821
            GG  + + +R+L+ G  ++  TPGR+ D++ R  +  + I+ L LDEAD ML+ GF+ QI  + + +    P   Q +L SAT P EI  + + F+ + I + V R   + + I Q    V   + K   L DL                ++F  TK+  D L   +    F  +++HGD  Q+ERE  ++ F+SG + +L++TDV ARGLD+P V+ ++ +DLPN+ + Y+HRIGR+GR G+ G+
Sbjct:  143 GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL----PPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA-------VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 377          
BLAST of EY729156 vs. ExPASy Swiss-Prot
Match: IF4A3_BOVIN (Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 8.652e-36
Identity = 85/246 (34.55%), Postives = 138/246 (56.10%), Query Frame = 3
Query:   87 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYTNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVXFDLPNDIDDYVHRIGRTGRAGKSGL 821
            GG  + + +R+L+ G  ++  TPGR+ D++ R  +  + I+ L LDEAD ML+ GF+ QI  + + +    P   Q +L SAT P EI  + + F+ + I + V R   + + I Q    V   + K   L DL                ++F  TK+  D L   +    F  +++HGD  Q+ERE  ++ F+SG + +L++TDV ARGLD+P V+ ++ +DLPN+ + Y+HRIGR+GR G+ G+
Sbjct:  142 GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL----PPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA-------VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 376          
BLAST of EY729156 vs. ExPASy Swiss-Prot
Match: DRS1_PICGU (ATP-dependent RNA helicase DRS1 OS=Pichia guilliermondii GN=DRS1 PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 8.652e-36
Identity = 96/249 (38.55%), Postives = 144/249 (57.83%), Query Frame = 3
Query:   78 VAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLV-FVETKKGADALEHWLYTNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVXFDLPNDIDDYVHRIGRTGRAGKSG 818
            +A GG  + QQ ++L+   DI+VATPGRL+D +  +   S++ +  L +DEADRML+ GF+ ++ +I   +++ P   RQTMLFSAT   +IQ L    L   + + V     +   +VQ  EFV    KR HL   L   +   V  +Q   +V FV  K+ A  L   L   G   + +HG  TQ++R  +++ F+S   P+L+ TD+AARGLDIP +  V+ FD+P   + Y+HR+GRT RAG+ G
Sbjct:  303 LAVGGLNLRQQEQQLKSRPDIVVATPGRLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEI---LELIPKHKRQTMLFSATMNTKIQDLIQLSLDKPVRIMVNPPKQAASKLVQ--EFVRIR-KREHLKPALLYHLLRLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLGMKVSELHGSLTQEQRLQSVKDFRSLAVPVLICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREG 545          
BLAST of EY729156 vs. ExPASy Swiss-Prot
Match: DRS1_DEBHA (ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.652e-36
Identity = 94/249 (37.75%), Postives = 143/249 (57.43%), Query Frame = 3
Query:   78 VAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVH-GKQALTLVFVETKKGADALEHWLYTNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVXFDLPNDIDDYVHRIGRTGRAGKSG 818
            +A GG  + QQ ++L+   DI++ATPGRL+D +  +   S+  +  L +DEADRMLD GF+ ++ +I   + + P   RQT+L+SAT   +IQ L    L   + + +    S+   +VQ  EFV    KR HL   L  Q+   V   +Q   +VFV  K+ A  L   L   G   + +HG  TQ++R  ++  FK+   P+L+ TD+AARGLDIP +  V+ +D+P   + Y+HR+GRT RAG+ G
Sbjct:  363 LAVGGLNLRQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQAELTEI---LSLIPRHKRQTLLYSATMNTKIQDLIQLSLQKPVRVMIDPPKSAAIKLVQ--EFVRIR-KRDHLKPALLFQLIKSVDPSQQNRIVVFVARKESAHKLRIILGLLGMRVSELHGSLTQEQRLASVNDFKNLTVPVLICTDLAARGLDIPKIEIVINYDMPKTHEIYLHRVGRTARAGREG 605          
BLAST of EY729156 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.130e-35
Identity = 91/261 (34.87%), Postives = 138/261 (52.87%), Query Frame = 3
Query:   63 GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ-RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYTNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVXFDLPNDIDDYVHRIGRTGRAGKSGLGTALFTR 842
            GVKV    GG  + +  R L+ GV ++V TPGR+ D+L+R  +    I+   LDEAD ML  GF+ QI  I Q +   PP + Q  +FSAT P E   +   F++  + + V R   + + I Q  V    E  K   L DL               +++FV T++  D L   + +     +  HGD  Q  R++ +R F+SG + +L+ TD+ ARG+D+  V+ V+ FDLP   ++Y+HRIGR+GR G+ G+     TR
Sbjct:  135 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLL---PPKI-QVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQ-------SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTR 384          
The following BLAST results are available for this feature:
BLAST of EY729156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_RAT8.652e-3634.55Eukaryotic initiation factor 4A-III OS=Rattus norv... [more]
IF4A3_PIG8.652e-3634.55Eukaryotic initiation factor 4A-III OS=Sus scrofa ... [more]
IF4A3_MOUSE8.652e-3634.55Eukaryotic initiation factor 4A-III OS=Mus musculu... [more]
IF4A3_MACFA8.652e-3634.55Eukaryotic initiation factor 4A-III OS=Macaca fasc... [more]
IF4A3_HUMAN8.652e-3634.55Eukaryotic initiation factor 4A-III OS=Homo sapien... [more]
IF4A3_CHICK8.652e-3634.55Eukaryotic initiation factor 4A-III OS=Gallus gall... [more]
IF4A3_BOVIN8.652e-3634.55Eukaryotic initiation factor 4A-III OS=Bos taurus ... [more]
DRS1_PICGU8.652e-3638.55ATP-dependent RNA helicase DRS1 OS=Pichia guillier... [more]
DRS1_DEBHA8.652e-3637.75ATP-dependent RNA helicase DRS1 OS=Debaryomyces ha... [more]
IF4A1_ARATH1.130e-3534.87Eukaryotic initiation factor 4A-1 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-013-C04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729156 ID=EY729156; Name=EY729156; organism=Citrus sinensis; type=EST; length=893bp
CACGCGTCCGCATTTATGGGTTGCAGATCCATGTTGAAGCCAAGAAATTT
TCCTATCAAACTGGTGTCAAGGTGGTGGTTGCTTACGGAGGAGCACCAAT
CAACCAACAGTTGCGAGAGCTTGAGAGAGGGGTTGATATTCTTGTGGCAA
CTCCAGGAAGATTGGTTGATCTGCTTGAGAGAGCTAGAGTTTCATTGCAG
ATGATTAGATACTTAGCTCTCGATGAGGCAGATCGGATGCTGGATATGGG
TTTTGAGCCTCAAATCAGAAAAATAGTGCAACAAATGGATATGCCTCCAC
CTGGTATGAGACAGACAATGCTTTTCAGTGCCACCTTCCCGAAAGAGATA
CAGAGATTGGCTTCGGACTTCCTAGCAAATTATATTTTTCTGGCTGTTGG
AAGGGTTGGTTCAAGCACTGATTTAATTGTTCAAAGAGTTGAGTTCGTTC
ACGAGTCAGACAAAAGAAGCCATCTGATGGACCTCTTGCATGCACAGGTG
GCAAATGGAGTTCATGGCAAGCAAGCTTTGACATTAGTTTTTGTTGAGAC
AAAGAAAGGTGCTGACGCATTGGAACACTGGTTGTATACGAATGGGTTTC
CTGCAACTACTATTCATGGTGACAGAACACAACAGGAAAGAGAACTAGCA
TTGAGATCATTTAAGAGTGGAAAGACACCAATTTTAGTAGCTACAGATGT
GGCAGCACGTGGTCTTGATATACCACATGTAGCTCATGTAGTCNACTTTG
ATCTGCCCAATGACATCGATGATTATGTTCATCGGATAGGAAGGACAGGA
CGAGCTGGGAAATCAGGATTGGGCACAGCCCTTTTTACGAGAACATATGT
CCTTGGCAAGGCTCTACTGAGCTATGCAGAAGCTATCCAGAGT
back to top