EY729153

Overview
NameEY729153
Unique NameEY729153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729153 vs. ExPASy Swiss-Prot
Match: NACA_PICST (Nascent polypeptide-associated complex subunit alpha OS=Pichia stipitis GN=EGD2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.439e-16
Identity = 52/150 (34.67%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  231 KLGMKPIPGVSRVTVQKSKNILFVISQPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDL------SHVVSKPESSAMARDDE---------------EVDETGVEPPDIELVMTQAGVSPAKAVKALKAGDGDVFHLSWSLT 617
            KL +K I G++RVT ++  N+++ I  PDV++S    TYV+FGEAK++D++ ++    A Q    D       SH        A+  D E               EVDE+G++  DI++++ Q  VS AKAVKAL+  DGD+ +    L+
Sbjct:   28 KLNLKQIKGITRVTFKQRGNLIYAIDAPDVYRS-AAGTYVVFGEAKVDDMNQRIADAQAAQAAETDAHAGHTHSHGEEDKSPEAITADLEKASLTEKIEEEEEEGEVDESGLDAKDIDIIVEQTQVSRAKAVKALRKHDGDMVNAIMELS 176          
BLAST of EY729153 vs. ExPASy Swiss-Prot
Match: NACA_YEAST (Nascent polypeptide-associated complex subunit alpha OS=Saccharomyces cerevisiae GN=EGD2 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 7.572e-16
Identity = 58/149 (38.93%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  231 KLGMKPIPGVSRVTVQKSKNILFVISQPDVFKSPTTDTYVIFGEAKIEDLSSQL---QTQAAEQFKAPDLSHVVSK-PE--------------SSAMARDDE--EVDETGVEPPDIELVMTQAGVSPAKAVKALKAGDGDVFHLSWSLT 617
            KLG+K IPG+ RVT +K  N ++ I +P+VF+S     YV+FGEAK+++ + +L   Q QA      P    V +K PE              ++A   DDE  EVD   +   DIELV+ Q  VS  +A+KALKA +GD+ +   SL+
Sbjct:   26 KLGLKQIPGIIRVTFRKKDNQIYAIEKPEVFRS-AGGNYVVFGEAKVDNFTQKLAAAQQQAQASGIMPSNEDVATKSPEDIQADMQAAAEGSVNAAAEEDDEEGEVDAGDLNKDDIELVVQQTNVSKNQAIKALKAHNGDLVNAIMSLS 173          
BLAST of EY729153 vs. ExPASy Swiss-Prot
Match: NACA_YEAS7 (Nascent polypeptide-associated complex subunit alpha OS=Saccharomyces cerevisiae (strain YJM789) GN=EGD2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.572e-16
Identity = 58/149 (38.93%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  231 KLGMKPIPGVSRVTVQKSKNILFVISQPDVFKSPTTDTYVIFGEAKIEDLSSQL---QTQAAEQFKAPDLSHVVSK-PE--------------SSAMARDDE--EVDETGVEPPDIELVMTQAGVSPAKAVKALKAGDGDVFHLSWSLT 617
            KLG+K IPG+ RVT +K  N ++ I +P+VF+S     YV+FGEAK+++ + +L   Q QA      P    V +K PE              ++A   DDE  EVD   +   DIELV+ Q  VS  +A+KALKA +GD+ +   SL+
Sbjct:   26 KLGLKQIPGIIRVTFRKKDNQIYAIEKPEVFRS-AGGNYVVFGEAKVDNFTQKLAAAQQQAQASGIMPSNEDVATKSPEDIQADMQAAAEGSVNAAAEEDDEEGEVDAGDLNKDDIELVVQQTNVSKNQAIKALKAHNGDLVNAIMSLS 173          
BLAST of EY729153 vs. ExPASy Swiss-Prot
Match: NACA_CRYNE (Nascent polypeptide-associated complex subunit alpha OS=Cryptococcus neoformans GN=EGD2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.572e-16
Identity = 51/153 (33.33%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  222 AMLKLGMKPIPGVSRVTVQKSKNILFVISQPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKA----------------------PDLSHVVSKPESSAMARDDEEVDETG-----VEPPDIELVMTQAGVSPAKAVKALKAGDGDVFH 599
            A+  LG+K + G+ RVT+++++N+L V+S P+V+KSP +D Y++FGEAK+ED +S  Q QA  Q  A                       +L       +SSA A   E  D +      V   +I+L++ Q GV  AKA +A  +  GD+ +
Sbjct:   33 ALEGLGLKRVQGIQRVTLRRARNVLLVVSSPEVYKSPGSDCYIVFGEAKVEDPNSAAQLQAQAQLAASSQAAQQAHAHGGFKEGVPKSLEELMQDAPSTDSSAPAPSGEATDASASGDFKVSDEEIQLIVAQTGVDEAKAREAYISEKGDLIN 185          
BLAST of EY729153 vs. ExPASy Swiss-Prot
Match: NACA_CANGA (Nascent polypeptide-associated complex subunit alpha OS=Candida glabrata GN=EGD2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.687e-15
Identity = 48/140 (34.29%), Postives = 81/140 (57.86%), Query Frame = 3
Query:  231 KLGMKPIPGVSRVTVQKSKNILFVISQPDVFKSPTTDTYVIFGEAKIEDLSSQL---QTQAAEQFKAPDLSHVVSKPESSAMARD--------DEEVDETGVEPPDIELVMTQAGVSPAKAVKALKAGDGDVFHLSWSLT 617
            KLG+K +PG+ RVT +K  N +F I +P+VF+S     YV+FGEAK+++ + +L   Q QA  Q        + +  +++A+A +        +E+VD   +   DI+LV+ Q   +  +A+KALK  +GD+ +   SL+
Sbjct:   26 KLGLKKVPGIIRVTFRKKDNQIFAIEKPEVFRS-VGGNYVVFGEAKVDNFTQRLAAAQQQAQSQTATKTPEDIQADMQAAAVANENKTEGDAAEEDVDAGDLSNDDIDLVVQQTNATKGQAIKALKEHNGDIVNAIMSLS 164          
BLAST of EY729153 vs. ExPASy Swiss-Prot
Match: NACA_DICDI (Nascent polypeptide-associated complex subunit alpha OS=Dictyostelium discoideum GN=nacA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.877e-15
Identity = 44/141 (31.21%), Postives = 77/141 (54.61%), Query Frame = 3
Query:  222 AMLKLGMKPIPGVSRVTVQKSKNILFVISQPDVFKSPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMARDDEEV--------DETGVEPPDIELVMTQAGVSPAKAVKALKAGDGDVFHLSWSLTT 620
            AM KLG+ P+  + RVT+++ + +L V+++P+V+ SP+ +TYV+FG+   +D++S+LQ    +      +   +  P +   + + EE+        D  GV P D+E+VM +   S  K V+ L A   D+      LTT
Sbjct:   19 AMKKLGLAPVSDIFRVTIKQKEGVLVVVAEPEVYASPSGETYVVFGDHSFDDIASRLQKAVPKANVDDIVKAAMPAPTAVKESEESEEIVAQAVDSFDYKGVNPKDVEVVMKETKASREKVVETLIATKNDLVSAVLELTT 159          
The following BLAST results are available for this feature:
BLAST of EY729153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
NACA_PICST4.439e-1634.67Nascent polypeptide-associated complex subunit alp... [more]
NACA_YEAST7.572e-1638.93Nascent polypeptide-associated complex subunit alp... [more]
NACA_YEAS77.572e-1638.93Nascent polypeptide-associated complex subunit alp... [more]
NACA_CRYNE7.572e-1633.33Nascent polypeptide-associated complex subunit alp... [more]
NACA_CANGA1.687e-1534.29Nascent polypeptide-associated complex subunit alp... [more]
NACA_DICDI2.877e-1531.21Nascent polypeptide-associated complex subunit alp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-013-C01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729153 ID=EY729153; Name=EY729153; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGACTGCTCAGACCCAAGAAGAGCTTCTCGCCTCTCTTCTC
GAACAGCAAAAAATCGATGATGATAAGCCTGTTGTAGAAGATGATGAAGA
TGAAGACGAGGATGAGGATGAAGATGATGAGAAAGACGAAGATGAAGCTG
ACGAGGGACACCCAGATGGAGAGGCAGGTGGTAGGTCCAAACAGAGCANA
AGTGAAAAGAAGAGTCGCCAAGCAATGTTAAAGCTTGGAATGAAACCTAT
CCCTGGTGTTAGCCGGGTTACCGTCCAAAAGAGCAAGAATATCTTGTTTG
TGATCTCACAACCGGATGTTTTCAAGAGCCCGACAACAGATACATATGTA
ATCTTTGGTGAGGCGAAGATCGAGGACTTGAGCTCACAATTGCAGACTCA
GGCGGCAGAGCAATTTAAGGCTCCTGATCTCAGCCACGTGGTCTCCAAAC
CTGAGTCATCAGCCATGGCTCGGGACGATGAAGAAGTAGATGAGACCGGC
GTTGAGCCTCCGGACATAGAGTTAGTAATGACACAGGCAGGAGTCTCCCC
GGCAAAGGCTGTGAAAGCGCTGAAGGCTGGCGATGGGGACGTATTTCATC
TATCATGGAGCTTGACCACTGAGAGTTTCTTAGATGTTGGTGGTGGTGTA
GTAGACCTGCTATTATTTTCCCGGCCGGGGTGTCGGTGATCCCGCGTTGT
TTTCCGCCGGCGTGGGGGGGGATGGCCTGTTCCTGTGGTGGGGTTATGAA
TCCACGCGGGGCTGGGCCTTTTGAGGATAAAAGGAGGGCAAGTGTTGCCT
GGAGTCGGGTGCGTTCCACCCCAGGCGAGTGTGGGGGTGCGTCCCTCGAA
ACAGGTTCGGGCCCGGGTGTTGGGTTTCCAGTACCCATTGGT
back to top