EY729116

Overview
NameEY729116
Unique NameEY729116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_MYCBO (2-isopropylmalate synthase OS=Mycobacterium bovis GN=leuA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.788e-46
Identity = 88/134 (65.67%), Postives = 106/134 (79.10%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDA----------VWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEF 372
            L TL LNL+++GV P +DFS+IDE+RR  EYCNQLPVH RHPY GDLV+TAFSGSHQDAI KG    + DA          +W+VPYLPIDP D+GR+Y+AVIRVNSQ GKGGV+Y+++ +HGL LPRRLQIEF
Sbjct:  324 LVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVHERHPYGGDLVYTAFSGSHQDAINKGLDAMKLDADAADCDVDDMLWQVPYLPIDPRDVGRTYEAVIRVNSQSGKGGVAYIMKTDHGLSLPRRLQIEF 457          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_ARTS2 (2-isopropylmalate synthase OS=Arthrobacter sp. (strain FB24) GN=leuA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.788e-46
Identity = 91/134 (67.91%), Postives = 103/134 (76.87%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDA----------VWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEF 372
            L TL LN++ QG+ P +DFSDID+VRR  EYCNQLPV  R PY GDLVFTAFSGSHQDAIKKGF   + DA           W+VPYLP+DP DLGRSY+AVIRVNSQ GKGGV+YLL++EH L LPRR QIEF
Sbjct:  292 LVTLGLNMFVQGIDPMIDFSDIDDVRRTVEYCNQLPVAERSPYGGDLVFTAFSGSHQDAIKKGFEALEKDAAAAGKDVADYTWQVPYLPVDPKDLGRSYEAVIRVNSQSGKGGVAYLLKNEHSLDLPRRAQIEF 425          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_STRAW (2-isopropylmalate synthase OS=Streptomyces avermitilis GN=leuA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.865e-46
Identity = 88/136 (64.71%), Postives = 107/136 (78.68%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAV----------WEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEFRR 378
            L TL +NL++QGV P +DFS+IDEVRR AEYCNQ+ VH RHPY GDLV+T+FSGSHQDAIKKGF   + DA           W VPYLPIDP D+GRSY+AVIRVNSQ GKGG++Y+L+++H L LPRR+QIEF +
Sbjct:  292 LVTLGMNLFSQGVDPQIDFSNIDEVRRTAEYCNQMEVHARHPYVGDLVYTSFSGSHQDAIKKGFDAMEADAAAKGVTVDDIEWAVPYLPIDPKDVGRSYEAVIRVNSQSGKGGIAYVLKNDHKLDLPRRMQIEFSK 427          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_MYCUA (2-isopropylmalate synthase OS=Mycobacterium ulcerans (strain Agy99) GN=leuA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.158e-45
Identity = 88/136 (64.71%), Postives = 106/136 (77.94%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDA----------VWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEFRR 378
            L TL LNL+++GV P +DFS+IDE+RR  EYCNQLPV  RHPY GDLV+TAFSGSHQDAI KG    + DA          +W+VPYLPIDP D+GR+Y+AVIRVNSQ GKGGV+Y+++ +HGL LPRRLQIEF R
Sbjct:  284 LATLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVPERHPYGGDLVYTAFSGSHQDAINKGLDAMEFDADAADSDMDDMLWQVPYLPIDPKDVGRTYEAVIRVNSQSGKGGVAYIMKADHGLALPRRLQIEFSR 419          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_RENSM (2-isopropylmalate synthase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=leuA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.512e-45
Identity = 92/134 (68.66%), Postives = 102/134 (76.12%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDA----------VWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEF 372
            L TL LN+++QGV P +DFSDIDE+RR  EYCNQLP   R PY GDLVFTAFSGSHQDAIKKGF   + DA          VW VPYLP+DP DLGRSY+AVIRVNSQ GKGGV+YLL+ EH L LPRR QIEF
Sbjct:  292 LVTLGLNMFSQGVDPMIDFSDIDEIRRTVEYCNQLPAPERMPYGGDLVFTAFSGSHQDAIKKGFEALERDADAAGIAVADTVWAVPYLPVDPKDLGRSYEAVIRVNSQSGKGGVAYLLKSEHSLDLPRRAQIEF 425          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_THEFY (2-isopropylmalate synthase OS=Thermobifida fusca (strain YX) GN=leuA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.400e-45
Identity = 87/136 (63.97%), Postives = 106/136 (77.94%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAV----------WEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEFRR 378
            L TL LNL++QG+ P +DFS+IDE+RR  E+C QLPV+PRHPY GDLV+TAFSGSHQDAIKKGF   + DA           W +PYLPIDP D+GR+Y+AVIRVNSQ GKGGVSY+L+ ++ + LPRRLQIEF R
Sbjct:  291 LVTLGLNLFSQGIDPMIDFSNIDEIRRTVEHCTQLPVNPRHPYGGDLVYTAFSGSHQDAIKKGFHALEADAAAAGVPVDEYRWNMPYLPIDPKDVGRTYEAVIRVNSQSGKGGVSYVLQRDYSIDLPRRLQIEFSR 426          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_KOCRD (2-isopropylmalate synthase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=leuA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.400e-45
Identity = 92/134 (68.66%), Postives = 102/134 (76.12%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDA----------VWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEF 372
            L TL LNL TQGV P +DFSDI+E+RR  EYCNQLPV  R PY GDLVFTAFSGSHQDAIKKGF   + DA           W VPYLPIDP D+GRSY+AVIRVNSQ GKGGV+YLL+ E+G+ LPRR QIEF
Sbjct:  292 LVTLGLNLLTQGVDPQIDFSDIEEIRRTVEYCNQLPVPERSPYGGDLVFTAFSGSHQDAIKKGFEAMERDAEQQGVGVDELEWAVPYLPIDPKDVGRSYEAVIRVNSQSGKGGVAYLLKSEYGIDLPRRAQIEF 425          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_MYCLE (2-isopropylmalate synthase OS=Mycobacterium leprae GN=leuA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.280e-44
Identity = 87/136 (63.97%), Postives = 106/136 (77.94%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDA----------VWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEFRR 378
            L TL LNL+++GV P +DFS+IDE+RR  EYCN+L VH RHPY GDLV+TAFSGSHQDAI KG    + DA          +W+VPYLPIDP D+GR+Y+AVIRVNSQ GKGGV+Y+++ +HGL LPRRLQIEF R
Sbjct:  327 LVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNKLRVHERHPYGGDLVYTAFSGSHQDAINKGLDQMKIDADAADSDVDDILWQVPYLPIDPRDVGRTYEAVIRVNSQSGKGGVAYIMKADHGLELPRRLQIEFSR 462          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_KINRD (2-isopropylmalate synthase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=leuA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.852e-44
Identity = 90/136 (66.18%), Postives = 102/136 (75.00%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAV----------WEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEFRR 378
            L TL +NL++QG+ P +DFSDID +RR  E+CNQLPV  R PY GDLVFTAFSGSHQDAIKKG    + DA           W VPYLPIDP D+GRSY+AVIRVNSQ GKGGV+YLL+ EH L LPRRLQIEF R
Sbjct:  292 LVTLGMNLFSQGIDPQIDFSDIDHIRRTVEHCNQLPVGERVPYGGDLVFTAFSGSHQDAIKKGLEAMERDAAAAGKTVDEIPWAVPYLPIDPRDVGRSYEAVIRVNSQSGKGGVAYLLKAEHQLDLPRRLQIEFSR 427          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_LEIXX (2-isopropylmalate synthase OS=Leifsonia xyli subsp. xyli GN=leuA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.725e-44
Identity = 88/134 (65.67%), Postives = 103/134 (76.87%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGF----------ALQQPDAVWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEF 372
            L TL +NL+TQG+ P +DFSDID ++R  E+CNQLPV  R P+ GDLVFTAFSGSHQDAIKKGF          ++   D VW VPYLPIDP DLGRSY+AVIRVNSQ GKGGV+YLL+ +H L LPR+LQIEF
Sbjct:  292 LVTLGVNLFTQGIDPQIDFSDIDHIKRTVEHCNQLPVGERSPWGGDLVFTAFSGSHQDAIKKGFEAMAARAQRESVDVDDLVWAVPYLPIDPKDLGRSYEAVIRVNSQSGKGGVAYLLKSDHALDLPRKLQIEF 425          
The following BLAST results are available for this feature:
BLAST of EY729116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
LEU1_MYCBO6.788e-4665.672-isopropylmalate synthase OS=Mycobacterium bovis ... [more]
LEU1_ARTS26.788e-4667.912-isopropylmalate synthase OS=Arthrobacter sp. (st... [more]
LEU1_STRAW8.865e-4664.712-isopropylmalate synthase OS=Streptomyces avermit... [more]
LEU1_MYCUA1.158e-4564.712-isopropylmalate synthase OS=Mycobacterium ulcera... [more]
LEU1_RENSM1.512e-4568.662-isopropylmalate synthase OS=Renibacterium salmon... [more]
LEU1_THEFY4.400e-4563.972-isopropylmalate synthase OS=Thermobifida fusca (... [more]
LEU1_KOCRD4.400e-4568.662-isopropylmalate synthase OS=Kocuria rhizophila (... [more]
LEU1_MYCLE1.280e-4463.972-isopropylmalate synthase OS=Mycobacterium leprae... [more]
LEU1_KINRD2.852e-4466.182-isopropylmalate synthase OS=Kineococcus radiotol... [more]
LEU1_LEIXX3.725e-4465.672-isopropylmalate synthase OS=Leifsonia xyli subsp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-012-G02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729116 ID=EY729116; Name=EY729116; organism=Citrus sinensis; type=EST; length=871bp
CTGGGTACGCTGGCCTTGAACCTCTACACCCAGGGCGTGCACCCGGGCCT
GGACTTCTCGGACATCGATGAAGTGCGCCGCTGCGCCGAGTACTGCAACC
AGTTGCCCGTGCACCCGCGCCACCCGTACGCCGGCGACCTGGTCTTCACG
GCCTTCTCCGGTTCGCATCAGGACGCCATCAAGAAGGGCTTTGCCCTGCA
ACAGCCCGACGCCGTCTGGGAAGTGCCGTACCTGCCGATCGACCCGGCCG
ACCTCGGCCGCAGCTACGACGCCGTGATCCGCGTCAACAGCCAACCGGGC
AAGGGCGGGGTGTCGTACCTGCTCGAACACGAGCACGGCCTGTTGTTGCC
GCGCCGCCTGCAGATCGAATTCAGGCGCGGCCATCCAGCGCGGTCTCGAC
AAGACCGGCCGCTAAGTCGCGGCCGGAGACGTGCAGACCAGTCTCGATCG
CGAGTACCTGGAACAGAAGATCCGGGGGGAAGGTGTGCGCCACCGGTTNN
AGGGGAAGNNTGGCTTGTCCCTCTGTTTTTGTGGGGGNGGGGGTGGTGGA
GGGGGGGTGAGGGGGGGAGGATGTTGGGCCGGGCGGGTCCGCGTCACCTA
CTCTTTGTCTCGGGTGCGGGGCCGCCCGCCGTGAGGCGGGGCGGCGCGGC
GCCCCCGGCCGCCGGCGGTGCGCCGCCGGCGCTGGAGTCCCGGCGTGCCG
ACGGGAGCGCGTGGCCCGGGCCCGGGCCGAGTGTGCTGTGAATCGCTGTT
ACGGCCGCGGTTCCCGCTCGCCCCTCCTGTGTTGTGGAGTTGATGAGGGG
ATACGTCGGCGTTTGGGGCAGCGACGCGCGGAGCGATGTACCACTCTGTC
AGGGGGCTCTCCGCGCCATCC
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