EY729059

Overview
NameEY729059
Unique NameEY729059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_CLOB8 (3-isopropylmalate dehydratase large subunit OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=leuC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.267e-17
Identity = 48/146 (32.88%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT+T+KI A  +    +  G  +  N+D+++ +D+  P +   FKK FG + KV+ + +I I+PDH+    D +A   V  +R+F     I+ F+++ ++G          + H  L +KG    G+V++G DSHTCT GA G F+
Sbjct:    3 MTMTQKILAAHAGLEAVKAGQLIEANLDLVLGNDITTPVAVNEFKK-FGTD-KVFSKSQIAIVPDHFTPNKDIKAAEQVKYIREFAQNMEIENFFEVGEMG----------IEHCLLPEKGLVVAGDVVIGADSHTCTYGALGAFS 136          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_THETN (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter tengcongensis GN=leuC PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.184e-17
Identity = 47/146 (32.19%), Postives = 88/146 (60.27%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            +TLT+KI +  + + ++ PG+ + ++VD+++ +D+  P +   F+K  G + KV+D  KI ++PDH++ + D ++   V+++R F  + NI  F+++  +          G+ H  L ++G   PG+V++G DSHTCT GA   FA
Sbjct:    3 LTLTQKILSAKAGR-EVKPGELIEIDVDMVLGNDITAPVAIKEFEK-IGVD-KVFDNTKIALVPDHFVPSKDIKSAEQVNVMRKFAKKYNIVNFFEVGRM----------GIEHALLPEQGLVLPGDVVIGADSHTCTYGALTCFA 135          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC1_PYRAB (3-isopropylmalate dehydratase large subunit 1 OS=Pyrococcus abyssi GN=leuC1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.184e-17
Identity = 52/146 (35.62%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT+ EKI A  SE+ ++ PG+ V   +D +  +DV  P +   F+ E G   +V+DRE+I I+ DH+    D ++       R+F  E  IK+F++   +G          V H  L + G   PG++++G DSHTCT GA G FA
Sbjct:    3 MTIAEKILADHSEREEVKPGEIVMAKLDFVFGNDVTMPLAIKKFR-ELGVK-RVFDRERIAIVLDHFTPNKDIKSAEQCKSSREFAKEMGIKWFFEGGSVG----------VEHCLLPELGLVLPGDLIIGADSHTCTYGALGAFA 136          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_NAUPA (3-isopropylmalate dehydratase large subunit OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=leuC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.381e-16
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT+TEKIFA    + ++ PG+ +  +VD+ + +D+  P S   F +   E  K+   +   I+ DH+I   D  +     I RDF  + ++K F+D KD+G          + H  L +KG   PG+V++G DSHTCT GA G F+
Sbjct:    3 MTITEKIFAEHIGR-EVKPGEIIMCDVDMTIGNDITTPISIRAFNESGAE--KLAKPDNFAIVLDHFIPPKDIASANQAKINRDFAYKHDLKNFFDEKDMG----------IEHRLLPEKGLVIPGDVIIGADSHTCTHGALGAFS 135          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_THEP3 (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=leuC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.110e-16
Identity = 49/146 (33.56%), Postives = 85/146 (58.22%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            +TLT+KI + A    ++ PG+ + V+VD+++ +DV  P +   F+K  G + +V+D  KI ++PDH++   D ++   V+I+R F  +  I  F+++  +          G+ H  L +KG   PG+V++G DSHTCT GA   F+
Sbjct:    3 LTLTQKILS-AKVGREVKPGELIEVDVDMVLGNDVTAPVAIKEFEK-IGID-RVFDNTKIALVPDHFVPNKDIKSAEQVNIMRKFAKKHGIVNFFEVGQM----------GIEHALLPEKGLVLPGDVVIGADSHTCTYGALTCFS 135          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC1_METAC (3-isopropylmalate dehydratase large subunit 1 OS=Methanosarcina acetivorans GN=leuC1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.928e-16
Identity = 51/145 (35.17%), Postives = 77/145 (53.10%), Query Frame = 1
Query:  367 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            T++EKIF+RA+   +    D V  +VD  M HD     +   FK+   E  KVWD  +IV+  DH    ++E +      +R++  EQ I  FY++ +           G+CH  L + G   PG++++G DSH+CT GAFG FA
Sbjct:   14 TISEKIFSRAAGT-EAKANDFVLADVDYAMAHDGTSVLAVNAFKEM--EMEKVWDPSRIVVPFDHIAPANNETSATLQREIREWVKEQGIPNFYEVGE-----------GICHQVLPENGFALPGKLVVGADSHSCTYGAFGAFA 144          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_WOLSU (3-isopropylmalate dehydratase large subunit OS=Wolinella succinogenes GN=leuC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.049e-16
Identity = 49/145 (33.79%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  367 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            TLTEKIF+  + K Q+S G+ +   +D+++ +D+  P S   F++      K+ + +   I+ DH+I   D  +     I RDF  +  +K+++D +D+G          + H  L +KG   PG+V++G DSHTCT GA G FA
Sbjct:    4 TLTEKIFSAHTNK-QVSAGEIIESPIDMVIGNDITTPLSIRAFEESGA--TKLANPDGFCIVMDHFIPAKDIASANQARISRDFAKKHQLKHYFDERDMG----------IEHAILPEKGLVLPGDVIIGADSHTCTHGALGAFA 135          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_THEPX (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter sp. (strain X514) GN=leuC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.049e-16
Identity = 48/146 (32.88%), Postives = 84/146 (57.53%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            +TLT+KI + A    ++  G+ + V+VD+++ +DV  P +   F+K   E  +V+D+ KI ++PDH++   D ++   V+I+R F  +  I  F+++  +          G+ H  L +KG   PG+V++G DSHTCT GA   F+
Sbjct:    3 LTLTQKILS-AKIGREVKAGELIEVDVDMVLGNDVTAPVAIKEFEKIGKE--EVFDKTKIALVPDHFVPNKDIKSAEQVNIMRKFAKKHGIVNFFEVGQM----------GIEHALLPEKGLVLPGDVVIGADSHTCTYGALTCFS 135          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_CLOD6 (3-isopropylmalate dehydratase large subunit OS=Clostridium difficile (strain 630) GN=leuC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.049e-16
Identity = 43/146 (29.45%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT+T+KI A+ ++  ++  G  +  ++D+++ +D+  P +   F+K   E+  V+D+ K+V++ DH+    D ++       R F   + +  F+D+ D+G          + H+ L +KG    G+V++G DSHTCT GA G F+
Sbjct:    3 MTMTQKILAKHAKLNEVKKGQLIEADLDVVLGNDITSPVAIREFEKLGIED--VYDKTKVVMVLDHFTPNKDIKSAEQCKFTRSFAKSKGVVNFFDVGDMG----------IEHVLLPEKGIVTAGDVIIGADSHTCTYGALGAFS 136          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_NITSB (3-isopropylmalate dehydratase large subunit OS=Nitratiruptor sp. (strain SB155-2) GN=leuC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.182e-15
Identity = 49/145 (33.79%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  367 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            T+TEKIF+    + ++  G+ V   +D+++ +D+  P S   F+    +  K+   +   I+ DH+I   D  +     I R+F  E N+K+F+D KD+G          + H  L +KG   PG+V++G DSHTCT GA G FA
Sbjct:    4 TITEKIFSEHVGR-EVKAGEIVECELDMIIGNDITTPISIKAFRDSGAK--KLAKPDNFAIVLDHFIPAKDIASANQAKISREFAYEHNLKHFFDEKDMG----------IEHALLPEKGLVVPGDVIIGADSHTCTHGALGAFA 135          
The following BLAST results are available for this feature:
BLAST of EY729059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
LEUC_CLOB86.267e-1732.883-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_THETN8.184e-1732.193-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC1_PYRAB8.184e-1735.623-isopropylmalate dehydratase large subunit 1 OS=P... [more]
LEUC_NAUPA2.381e-1634.933-isopropylmalate dehydratase large subunit OS=Nau... [more]
LEUC_THEP33.110e-1633.563-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC1_METAC6.928e-1635.173-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC_WOLSU9.049e-1633.793-isopropylmalate dehydratase large subunit OS=Wol... [more]
LEUC_THEPX9.049e-1632.883-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC_CLOD69.049e-1629.453-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_NITSB1.182e-1533.793-isopropylmalate dehydratase large subunit OS=Nit... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-012-A08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729059 ID=EY729059; Name=EY729059; organism=Citrus sinensis; type=EST; length=838bp
CCACGCGTCCGTGATTTTTTATATTGTTTGTGATCAAACTTTCTCTCAGC
CGCCGCCGCCACTTTCTTAGGAAACAAACTAAATTTAGACACTCTTAAAT
CTTAATCCCTACAGAACAAACCAAACCAAAAAAAAACAGGCCTCTTGTAG
CAAATAAACATGGCTTCCTCTGTCATTTCCCCAGCTCCAACATCTTCTTT
CATCAACAACAAGAAGGATTTGGGTAGCTTTTGTTTTTCGTCGACATCAC
AATTTTCAGTCAACAAATGCAAGAAATTGGCAGTCTCCAAGAAAATTGTG
TCGGTCATGGCACCTCAGCAATCAGAACGCCGGCCTGCCACCACTGGCTC
GGTAAAAAATGCGATGACGTTGACGGAGAAGATATTTGCCAGGGCTTCAG
AGAAACCCCAGTTGAGCCCGGGAGACAATGTGTGGGTTAATGTTGATATC
TTGATGACCCACGATGTTTGTGGCCCCGGCTCCTTTGGTATCTTTAAAAA
AGAGTTTGGTGAAAATGCTAAGGTTTGGGACCGTGAAAAGATTGTCATTA
TACCTGATCATTATATATTCACAAGTGATGAACGTGCAAATCGTAATGTG
GATATCCTGAGGGATTTCTGCATGGAGCAGAATATCAAGTACTTTTATGA
TATTAAAGATCTTGGGTACTTTAAGGCTAACCCGGATTATAAAGGCGTAT
GTCATATTGCACTTGCCCAAAAAGGCCATTGCAGGCCTGGAGAGGTCTTG
CTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCCATTTGC
ACTGGCATGGGCACACTGATGCAGGTTTATATTGGGCA
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