EY729058

Overview
NameEY729058
Unique NameEY729058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN2_DEBHA (5'-3' exoribonuclease 2 OS=Debaryomyces hansenii GN=RAT1 PE=3 SV=4)

HSP 1 Score: 174.481 bits (441), Expect = 7.598e-43
Identity = 91/200 (45.50%), Postives = 124/200 (62.00%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHLFKLL 661
            + VPGEGEHK+MS++R QR+ P YDPNT+HC+YGLDADLI L LATHE HF +LRE VF   Q  +  +  Q        +  A++ A             KKP+ +LH+  LREYL+ E   P+  F  DLE  +DD++FMCFFVGNDFLPH+P+L++R+  I++L+  +K+    L  Y+T     +L  VE L   L
Sbjct:  195 ATVPGEGEHKLMSFIRSQRSDPEYDPNTKHCIYGLDADLIFLGLATHEPHFRVLREDVFA-NQSRQMRISDQLSMTQDQKDSIAEQDA-------------KKPFLWLHVNVLREYLEIELYNPHLSFPFDLERAIDDWVFMCFFVGNDFLPHLPSLDVRDNGIDILVNCWKRMLPKLRDYITCDGNLNLESVEKLLSSL 380          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN2_CANGA (5'-3' exoribonuclease 2 OS=Candida glabrata GN=RAT1 PE=3 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 1.296e-42
Identity = 93/202 (46.04%), Postives = 121/202 (59.90%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVP--KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHLFKLL 661
            + VPGEGEHKIM+++R QR  P Y+PNT HC+YGLDADLI L LATHE HF ILRE VF    + +                  K      DE+ D +     +KP+ +LHI  LREYL  E   P  PF  DLE  +DD++FMCFF GNDFLPH+P L++RE +I++L+ ++K     L  Y+T   K +L  VE + K L
Sbjct:  198 ATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFAQDNRKR---------------NNVKDTIDMTDEEKDLIRKQDSEKPFLWLHISVLREYLSAELWTPKLPFPFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKSILPRLKTYMTCDGKLNLESVEMVLKEL 384          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN2_ASHGO (5'-3' exoribonuclease 2 OS=Ashbya gossypii GN=RAT1 PE=3 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 1.433e-41
Identity = 90/200 (45.00%), Postives = 123/200 (61.50%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHLFKLL 661
            + VPGEGEHKIM+++R QR    Y+PNT HC+YGLDADLI L LATHE HF ILRE VF    + +        H   +   + K+   E D +        KP+ +LH+  LREYL  E  +P   F  DLE  +DD++FMCFF GNDFLPH+P+L++RE +I++L+ ++K    +L  YLT   K +L+ VE +   L
Sbjct:  198 ATVPGEGEHKIMNFIRSQRADVQYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFAQDNRRR-----PRQHDMMDMSAEEKQALIEQDAE--------KPFLWLHVSVLREYLSAELLVPRLAFHFDLERAIDDWVFMCFFCGNDFLPHLPSLDVRENSIDILVDIWKAVLPSLKTYLTCDGKLNLKGVEKVLAQL 384          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN2_YEAST (5'-3' exoribonuclease 2 OS=Saccharomyces cerevisiae GN=RAT1 PE=1 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 4.169e-41
Identity = 91/200 (45.50%), Postives = 124/200 (62.00%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHLFKLL 661
            + VPGEGEHKIM+++R QR  P Y+PNT HC+YGLDADLI L LATHE HF ILRE VF    + +        +L        + K  +F +K +     ++P+ +LHI  LREYL  E  +P  PF  DLE  +DD++FMCFF GNDFLPH+P L++RE +I++L+ ++K     L  Y+T     +L  VE L + L
Sbjct:  198 ATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFAQDNRKR-------NNLKDTINMTEEEK--QFLQKQNS----EQPFLWLHINVLREYLSAELWVPGLPFTFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKVVLPKLKTYMTCDGVLNLPSVETLLQHL 384          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN2_KLULA (5'-3' exoribonuclease 2 OS=Kluyveromyces lactis GN=RAT1 PE=3 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.584e-40
Identity = 91/200 (45.50%), Postives = 122/200 (61.00%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHLFKLL 661
            + VPGEGEHKIM+++R QR    Y+PNT HC+YGLDADLI L LATHE HF ILRE VF      K     +P  +  N   + K++  + D +        KP+ +LHI  LREYL  E  IP+  F+ D E  +DD++FMCFF GNDFLPH+P L++RE +I++L+ ++K        YLT     +L  VE L + L
Sbjct:  198 ATVPGEGEHKIMNFIRSQRADTQYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFANNNYKK----PKPQDMI-NLSEEEKQQLIQQDSE--------KPFLWLHISVLREYLSAELAIPHLSFQFDFERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILVDIWKTVLPKTKTYLTCDGTLNLEPVEALLEQL 384          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN1_SCHPO (5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe GN=exo2 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.303e-38
Identity = 86/194 (44.33%), Postives = 116/194 (59.79%), Query Frame = 2
Query:   71 PGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILR-EVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNP--PFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE 643
            PGEGEHKIM Y+R Q+  P Y+PNTRHCLYGLDADLIML L +H+ HF +LR EV F P  ++                 ++K  A              + +  LH+  LREYL++EF+       F+ DLE I+DDFI + FFVGNDFLPH+P L I EGA+ L+ ++YKK   + GGY+ +    ++ R+E
Sbjct:  173 PGEGEHKIMEYIRTQKAQPSYNPNTRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGPASRN-----------------RSKELA-------------HQKFYLLHLSLLREYLEFEFQECRSTFTFKYDLEKILDDFILLAFFVGNDFLPHLPGLHINEGALALMFSIYKKVMPSAGGYINEKGVINMARLE 336          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN1_HUMAN (5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.092e-36
Identity = 87/205 (42.44%), Postives = 113/205 (55.12%), Query Frame = 2
Query:   71 PGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK-PYQFLHIWTLREYLDYEFRI--PNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE-HLFKLLDLMR 673
            PGEGEHKIM ++R ++  P +DPNTRHCLYGLDADLIML L +HE HFS+LRE V   G                              +K   V  P++  +  LH+  +REY+DYEF +      F+ D+E I+DD+I M F VGNDF+PH+P L I   A+ LL   Y      LGGY+ +    +L R E +L KL D  R
Sbjct:  174 PGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGG------------------------------KKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDR 348          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN1_MOUSE (5'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.175e-35
Identity = 87/205 (42.44%), Postives = 112/205 (54.63%), Query Frame = 2
Query:   71 PGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK-PYQFLHIWTLREYLDYEFRI--PNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE-HLFKLLDLMR 673
            PGEGEHKIM ++R ++  P +DPNTRHCLYGLDADLIML L +HE HFS+LRE V   G                              +K   V  P++  +  LH+  +REY+DYEF        F+ D+E I+DD+I M F VGNDF+PH+P L I   A+ LL   Y      LGGY+ +    +L R E +L KL D  R
Sbjct:  174 PGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGG------------------------------KKTQRVCAPEETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDR 348          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN2_YARLI (5'-3' exoribonuclease 2 OS=Yarrowia lipolytica GN=RAT1 PE=3 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 2.004e-35
Identity = 85/200 (42.50%), Postives = 115/200 (57.50%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEI--DLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHLFK 655
            + VPGEGEHKIM ++R QR  P Y+ NT HC+YGLDADLI L LATHE  F +LRE VF   +Q+K       GH                          KKP+ +L+I  LREYL  + R  +P  +I  DLE  +DD++F+CFFVGNDFLPH+P  ++R+G+IN+L+  +K        Y+T     +L + + L K
Sbjct:  215 ATVPGEGEHKIMEFIRSQRGDPTYNANTSHCIYGLDADLIFLGLATHEPKFKLLREDVF---RQNK-----TAGH-------------------------QKKPFIWLNIDILREYLREDLRFTHPQTKIPFDLERAIDDWVFLCFFVGNDFLPHLPACDVRDGSINVLVNQWKNGMTRWKDYITCDGHVNLAQAQDLLK 381          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN1_YEAST (5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae GN=KEM1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.648e-30
Identity = 74/193 (38.34%), Postives = 112/193 (58.03%), Query Frame = 2
Query:   68 VPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFR--IPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRV 640
            VPGEGEHKIM+++R  ++   ++ NTRHC+YGLDADLIML L+TH  HF++LRE V T G++              N E K+               +  + +  LH+  LREY++ EF+       FE + E I+DDFI + F +GNDFLP++P L + +GA  +L+  +K+      GY+ +  K +L+R+
Sbjct:  173 VPGEGEHKIMNFIRHLKSQKDFNQNTRHCIYGLDADLIMLGLSTHGPHFALLREEV-TFGRR--------------NSEKKS---------------LEHQNFYLLHLSLLREYMELEFKEIADEMQFEYNFERILDDFILVMFVIGNDFLPNLPDLHLNKGAFPVLLQTFKEALLHTDGYINEHGKINLKRL 335          
The following BLAST results are available for this feature:
BLAST of EY729058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
XRN2_DEBHA7.598e-4345.505'-3' exoribonuclease 2 OS=Debaryomyces hansenii G... [more]
XRN2_CANGA1.296e-4246.045'-3' exoribonuclease 2 OS=Candida glabrata GN=RAT... [more]
XRN2_ASHGO1.433e-4145.005'-3' exoribonuclease 2 OS=Ashbya gossypii GN=RAT1... [more]
XRN2_YEAST4.169e-4145.505'-3' exoribonuclease 2 OS=Saccharomyces cerevisia... [more]
XRN2_KLULA1.584e-4045.505'-3' exoribonuclease 2 OS=Kluyveromyces lactis GN... [more]
XRN1_SCHPO3.303e-3844.335'-3' exoribonuclease 1 OS=Schizosaccharomyces pom... [more]
XRN1_HUMAN3.092e-3642.445'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE... [more]
XRN1_MOUSE1.175e-3542.445'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE... [more]
XRN2_YARLI2.004e-3542.505'-3' exoribonuclease 2 OS=Yarrowia lipolytica GN=... [more]
XRN1_YEAST5.648e-3038.345'-3' exoribonuclease 1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-012-A07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729058 ID=EY729058; Name=EY729058; organism=Citrus sinensis; type=EST; length=921bp
CACGCGTCCGCACTGAAAGAATTATCCAAGCTTTAAGGGGTATAACCGTC
CCACCGTCCTCTCAAATGTTCCTGGTGAAGGGGAACACAAGATTATGTCA
TACGTTCGCCTTCAAAGAAATCTTCCTGGTTATGATCCAAATACTCGCCA
TTGCTTGTATGGTTTGGATGCGGATCTGATTATGTTGGCTTTGGCAACGC
ATGAAGTTCATTTTTCAATCCTTCGAGAGGTTGTATTTACTCCTGGACAG
CAAGACAAATGCTTTCTTTGTGGTCAGCCTGGTCATCTGGCTGCCAATTG
TGAAGGAAAGGCGAAGAGAAAGGCAGGAGAATTTGATGAAAAAGGGGATG
AGGTCGTTGTGCCTAAAAAGCCCTATCAGTTTCTCCACATATGGACCCTT
AGAGAATATCTGGACTACGAGTTCAGAATTCCTAATCCTCCATTTGAGAT
CGACTTAGAATGCATTGTGGATGATTTTATCTTTATGTGTTTCTTTGTTG
GCAATGACTTTTTGCCGCATATGCCAACATTGGAGATTCGTGAGGGTGCA
ATCAACTTGTTGATGGCAGTTTACAAGAAGGAATTTAGGGCTTTGGGCGG
GTACTTGACTGATGGAAGCAAGCCAAGTCTGCGCCGGGTGGAGCATTTAT
TCAAGCTGTTGGATCTTATGAGGATAGAATATTCCGAANAGAGCACGACT
CCATCAGAGACATGCTGAAAGAAATCAGCGTGAAAAGGGCACAGCAGAAG
AGGAGATGATGTGGAGCCCCTANCCCANCCTGATTCCTTANTTCCTGGTT
CTCNGATTCATGGTTCTCGTCTTGCTTCAGGGCCCTTCTCTTCACCATAT
CANCAAAGTGCTTGTGTTGGCAGGCTTAAATACGGTAAAGGAACTTCCGG
TCGCCCCATAAAGTCCTCGTT
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