EY729026

Overview
NameEY729026
Unique NameEY729026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.345e-19
Identity = 64/203 (31.53%), Postives = 95/203 (46.80%), Query Frame = 1
Query:   19 KFEHPRHGSLGFLPRKRAARHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYAYGFFXKQI 624
            +   PR GS+ F PRKRAAR   +VK++P+ D+P     L A  GYKAGMTH++    +  S     E    VTI+E           Y KT RGL++L  V A    +++RR+                   Y+ +   + I++ +E    Y + VRV+ HT  R +  + +KK  + E    G T  EK +YA     K +
Sbjct:    3 RHHQPRKGSVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSPTEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRKL------------TPPADDYDQEAAIEKIRSNME----YVADVRVIVHTNPR-LASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDV 184          

HSP 2 Score: 24.6386 bits (52), Expect = 3.345e-19
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 3
Query:  681 KVKGNKGVVPRWGVTXFLARSQRSS 755
            K KG +G V RWG+     ++ RSS
Sbjct:  203 KGKGFQGPVKRWGIRIQYGKAARSS 227          

HSP 3 Score: 21.1718 bits (43), Expect = 3.345e-19
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  659 IDIIGVTKGKG 691
            +D I VTKGKG
Sbjct:  196 VDAIAVTKGKG 206          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 67/207 (32.37%), Postives = 101/207 (48.79%), Query Frame = 1
Query:   19 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYAYGFFXKQIPVDAV 639
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ET          Y KT +GL++L  VWA+   +E+ R+                  + E  +  +S+ A LEK       +RV+ HT   K  G+ +KK  ++EI+  G ++AEK+ YA     K + ++ V
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------TVTKKEEIKTVESLDAVLEKTVD----LRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDV 188          

HSP 2 Score: 21.1718 bits (43), Expect = 1.449e-18
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  653 KMIDIIGVTKGKG 691
            + ID + VTKGKG
Sbjct:  193 EFIDTLAVTKGKG 205          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 67/207 (32.37%), Postives = 101/207 (48.79%), Query Frame = 1
Query:   19 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYAYGFFXKQIPVDAV 639
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ET          Y KT +GL++L  VWA+   +E+ R+                  + E  +  +S+ A LEK       +RV+ HT   K  G+ +KK  ++EI+  G ++AEK+ YA     K + ++ V
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------TVTKKEEIKTVESLDAVLEKTVD----LRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDV 188          

HSP 2 Score: 21.1718 bits (43), Expect = 1.449e-18
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  653 KMIDIIGVTKGKG 691
            + ID + VTKGKG
Sbjct:  193 EFIDTLAVTKGKG 205          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 66/207 (31.88%), Postives = 100/207 (48.31%), Query Frame = 1
Query:   19 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYAYGFFXKQIPVDAV 639
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ET          Y KT +GL++L  VWA+ L  ++ R+                       E KK+  A L+ + + A+ VR + HT   K  G+ +KK  ++EI+  G ++AE++ YA     K + +  V
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDGDLGRKL-----------------TLAKKEEKKTADA-LDAVVEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDV 188          

HSP 2 Score: 21.1718 bits (43), Expect = 1.449e-18
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  653 KMIDIIGVTKGKG 691
            ++ID + +TKGKG
Sbjct:  193 EIIDTLAITKGKG 205          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.884e-18
Identity = 66/207 (31.88%), Postives = 100/207 (48.31%), Query Frame = 1
Query:   19 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYAYGFFXKQIPVDAV 639
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ET          Y KT +GL++L  VWA+ L  ++ R+                       E KK+  A L+ + + A+ VR + HT   K  G+ +KK  ++EI+  G ++AE++ YA     K + +  V
Sbjct:    4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLQALTEVWAEQLDGDLGRKL-----------------TLVKKEEKKTADA-LDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDV 188          

HSP 2 Score: 21.1718 bits (43), Expect = 1.884e-18
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  653 KMIDIIGVTKGKG 691
            ++ID + +TKGKG
Sbjct:  193 EIIDTLAITKGKG 205          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.141e-18
Identity = 65/204 (31.86%), Postives = 99/204 (48.53%), Query Frame = 1
Query:   31 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYAYGFFXKQIPVDAV 639
            PR GSL F PRKRA R   +++++P++D     RL AF  YKAGM+H     + P S    +E    +TI+E           Y +  R  L +L  VWA +L +E+ R+                  +    E +K+++  LE +K     VRVL HT   K+  L +KK  ++EI+  G  I E+++YA     KQ+ +  V
Sbjct:    8 PRRGSLAFSPRKRAKRPVPRIRSWPEED---TVRLQAFPVYKAGMSHAFIKEDNPKSPNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI-----------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTN-PKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDV 189          

HSP 2 Score: 25.0238 bits (53), Expect = 4.141e-18
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  647 DDKMIDIIGVTKGKG 691
            + +++D IGVTKGKG
Sbjct:  192 EGELVDTIGVTKGKG 206          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.183e-17
Identity = 61/212 (28.77%), Postives = 102/212 (48.11%), Query Frame = 1
Query:   13 HRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYAS---VVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYAYGFFXKQIPVDAV 639
            HRK   PR GS G  PRKRA+      +++P    ++P +L  F+GYK GM+HI    +KP S  + KE    V++IET          YV  P+G  +  T +   +SE++ +   +               + + D  K+ ++ +L++I    +    +RVL  TQ + +  L +KK  ++E+Q  GG I  +++Y      K + V  V
Sbjct:    3 HRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEP-KLLGFVGYKVGMSHIFMIDDKPTSPNYGKEIYVPVSVIETPPVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLIQQR-----------KVTRLKID--KEKMKGKLDEINNKLNDILYLRVLIATQPKLVPSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDV 200          

HSP 2 Score: 28.1054 bits (61), Expect = 1.183e-17
Identity = 15/30 (50.00%), Postives = 18/30 (60.00%), Query Frame = 2
Query:  647 DDKMIDIIGVTKGKG**RCGPPLGCYRLPR 736
            + ++IDIIGVTKGKG        G   LPR
Sbjct:  203 EGQLIDIIGVTKGKGFQGVVKRYGVVELPR 232          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.712e-17
Identity = 66/208 (31.73%), Postives = 95/208 (45.67%), Query Frame = 1
Query:   13 HRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQL-EKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYAYGFFXKQIPV 630
            HRK   PR GS G  PRKRA       K +P  +  +P +L  F+GYKAGMTH+    +KP S  + KE    VTI+E+          Y    +G L  L   WA    EE   ++ K                 + D  K   +  L +K     + +R+L  TQ   +  L +K+  ++EIQ  GG+I ++++Y      KQIPV
Sbjct:    3 HRKLSSPRRGSAGLRPRKRADEILPTPKNWPLVNLKEP-KLLGFIGYKAGMTHVYMIDDKPTSPNYGKEVYTPVTIVESPPILGLALRAYHIDSKGELSVLVDYWANF--EEGSLKYLKR-----------KITSLKVDSSKMKEKLDLIQKNLNNITYMRLLVSTQPWLVPSLGKKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPV 196          

HSP 2 Score: 25.409 bits (54), Expect = 5.712e-17
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  647 DDKMIDIIGVTKGKG 691
            + ++ DIIGVTKGKG
Sbjct:  202 EGQLTDIIGVTKGKG 216          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.483e-16
Identity = 57/190 (30.00%), Postives = 94/190 (49.47%), Query Frame = 1
Query:   31 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYA 600
            PR GS+GF PR RAA    +  ++P DD  +P  L  F GYKAGM+H+V   ++P S    +E    VT++ET          Y  TP G R L  VW   + E++ R                   + ++ + +  I+  L+  +   + VRV+ HT    +  + +K+  +ME +  GG+++++VD+A
Sbjct:    7 PRKGSMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVAINDEPNSPREGQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLERSL--------------SVPEEQSGDIEGDIRTALD--EGALADVRVITHTVPGALSSVPKKEPDVMETRVGGGSLSDRVDFA 178          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 5.637e-16
Identity = 58/190 (30.53%), Postives = 85/190 (44.74%), Query Frame = 1
Query:   31 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYA 600
            PR GS+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ET          Y  TP G + L  VWA    E + R                       DEG  + +       +  + +RV+ HT      G+ +K   +ME +  GGT+A+++++A
Sbjct:    7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFA 176          
The following BLAST results are available for this feature:
BLAST of EY729026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RL3_METTH3.345e-1931.5350S ribosomal protein L3P OS=Methanobacterium ther... [more]
RL3_METVS1.449e-1832.3750S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METVA1.449e-1832.3750S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METM51.449e-1831.8850S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM61.884e-1831.8850S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METJA4.141e-1831.8650S ribosomal protein L3P OS=Methanocaldococcus ja... [more]
RL3_SULTO1.183e-1728.7750S ribosomal protein L3P OS=Sulfolobus tokodaii G... [more]
RL3_SULAC5.712e-1731.7350S ribosomal protein L3P OS=Sulfolobus acidocalda... [more]
RL3_NATPD1.483e-1630.0050S ribosomal protein L3P OS=Natronomonas pharaoni... [more]
RL3_HALSA5.637e-1630.5350S ribosomal protein L3P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-011-F02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729026 ID=EY729026; Name=EY729026; organism=Citrus sinensis; type=EST; length=875bp
CACGCGTCCGCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGG
ATTTCTTCCAAGGAAGAGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTT
TTCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGT
TACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGGATC
TAAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCC
CTCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGT
CTTCGCTCTTTGAACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAG
AAGAAGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAA
AATACTCAAAGCAGTATGAGACAGATGAAGGGAAGAAAAGTATCCAAGCT
CAGCTGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCA
CACTCAGATTAGGAAAATGAAGGGTTTGAAGCAAAAGAAGGCACACCTGA
TGGAAATCCAGGGTCATGGTGGCACCATTGCTGAAAAAGTTGACTATGCA
TATGGCTTCTTTGANAAGCAAATTCCTGTTGATGCTGTNTCCACANGATG
ATAAGATGATTGACATCATCGGTGTCACGAAAGGTAAAGGGTAATAAAGG
TGTGGTCCCCCGTTGGGGTGTTACCGNCTTCCTCGCCAGATCCCAAAGGT
CTTCGTTAAGGGGCTTGTATTGGTGCCTGGCATCCTGCTAGGTTCCTTCC
CATTGGCATGGGGNTCAAAATGATACCATCCTCTACTAAATGACAAAAAG
TTACACCTGGCCAGGGTTGACAGAA
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