EY729026

Overview
NameEY729026
Unique NameEY729026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.300e-12
Identity = 74/276 (26.81%), Postives = 114/276 (41.30%), Query Frame = 1
Query:   19 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWA------QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYAYGFFXKQIPV----------DAVSTX**DDXXXXXXXXXXVIKVWSPVGVLPXSSPDPKGLR*GACIGAWHPARFL 798
            K   PR GSL F PRKRA     +++++PK+      R+  F GYKAGMTHI+   ++PG   + KE    VTIIET          Y +   GL +   V         ++S++ + R +  +              Y  D+ ++ +   LE + K   +V V A    +      +KK  +ME    G ++ EK +Y      K++ V          D ++                 +K W   G+   +  D KG R    IG WHPAR +
Sbjct:    3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKE---TEVRMLGFAGYKAGMTHILMIDDEPG-LTNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKF-TFYQLLKRRIATLPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAV-------TKGKGTQGPVKRW---GIKLRAHKDSKGRRKVGSIGPWHPARVM 262          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.895e-12
Identity = 60/206 (29.13%), Postives = 94/206 (45.63%), Query Frame = 1
Query:   31 PRHGSLGFLPRKRAARHRGKVKAFPK--DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSE-EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYAYGFFXKQIPVDAV 639
            PR GSLG+ PR RA   + K++ + +  D P    ++  F+G+KAGM+HIV   ++P S     E    VTI+E           Y  +P G + +   W   L   E      KN               Y+TDE    I A+L K K   + +RV+  T   ++ G+ +K   LME +  GG +A++ ++A     K + +  V
Sbjct:    7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQP----KIQGFVGFKAGMSHIVMVDDRPHSATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKN--------------GYKTDEQLAKI-AELVK-KGVVADLRVMTVTLTSEVSGIPKKVPELMENRIAGGDMAKRFEFAKSLMGKAVGIKDV 192          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.781e-12
Identity = 57/212 (26.89%), Postives = 91/212 (42.92%), Query Frame = 1
Query:    4 ASAHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYAYGFFXKQIPVDAV 639
            AS HR    P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IET          Y +   G +++   WA  L  E++RR                       EG ++I   +E+ +   S +R + +T  + + G+ +K   +ME       +  K +YA       + V  V
Sbjct:    2 ASIHR----PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDIKNSLTQGMEISVPVTVIETPAIRVAAVRAYTEDSTGEKAIAEAWAADLDSELKRRI-------------PIPAAGNQAEGLENIGKLIEEGR--VSDIRAVTYTLPKSLTGVPKKVPDIMESGISAKDLGAKFEYAKSILGNLVNVTDV 192          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.938e-12
Identity = 58/199 (29.15%), Postives = 86/199 (43.22%), Query Frame = 1
Query:    4 ASAHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYA 600
            AS HR    P+ GSL F PRKRA  H  + +A+P  + +   RL  F GYK GMTH++   +   S     E    VTIIET          Y +   G +++  VWA  L  E++RR                       E   +I   +E+ K   S +R + +T  + + G+ +K   +ME       +  K +YA
Sbjct:    2 ASIHR----PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPRLQGFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTIIETPAIRVAAIRAYAEDTAGEKAIAEVWATDLDPELKRRI-------------PVPKGDNMAETLGNIGKMIEEGK--VSDIRAVTYTLPKSLTGVPKKTPDIMESGISARDLNTKFEYA 179          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_THESM (50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.437e-11
Identity = 74/272 (27.21%), Postives = 106/272 (38.97%), Query Frame = 1
Query:   19 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQ--HLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYAYGFFXKQIPV----------DAVSTX**DDXXXXXXXXXXVIKVWSPVGVLPXSSPDPKGLR*GACIGAWHPARFL 798
            +   PR GSL + PRKRA     +++ +P++   +  R+  F GYKAGMTH++   + PG     KE    VTI+E           Y +   GL +   V      L     +R                  +  T+E  +    +LE + K   VV + A    +      +KK  +ME    G +I EK +Y      K+I V          D V+                 +K W   GV   S  D KG R  A IG WHPAR +
Sbjct:    3 RISRPRRGSLAYSPRKRAKSIVPRIRKWPQE---QEVRMLGFAGYKAGMTHVLMIDDAPG-LTKGKEIFVPVTIVEAPPLMVYGIRAYKRGYFGLETATEVIVPDFKLENYPSKRAKNVTFYKLLERRIKTLPKNYTEEVFQQKLGELEDLVKTGEVVELRALVATQPWLARIKKKPEVMEYAVGGTSIEEKFNYIKEKLGKEIRVGEILQEGELLDIVAV-------TKGKGTQGPVKRW---GVKLTSHKDSKGRRKVATIGPWHPARVM 260          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.437e-11
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 1
Query:    4 ASAHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRR 357
            AS HR    P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IET          Y +   G +++  VWA  L  E++RR
Sbjct:    2 ASIHR----PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTVIETPAIRVAAIRAYAEDSTGEKAIAEVWAADLDPELKRR 113          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_NANEQ (50S ribosomal protein L3P OS=Nanoarchaeum equitans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.876e-11
Identity = 52/203 (25.62%), Postives = 93/203 (45.81%), Query Frame = 1
Query:   31 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYAYGFFXKQIPVDAV 639
            PR GS+GF PRKRA+R   ++K +PK +  KP    AF  YK GMTH + ++       + +     VT++E           Y K    L+ +++++   L + V R+  K                Y  +E K+   ++ +     A  V+++  TQ  K+K   +K   + +I   G  + +K++YA     K++ ++ V
Sbjct:    9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKP---LAFAAYKVGMTHTILNI-------NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK-------------LKNYNFEEKKEQFLSKADN----ADEVKIIVSTQPWKIK--LKKTPEIFDIPIGGSDVNKKLEYALSLLGKELSINDV 182          
BLAST of EY729026 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.201e-11
Identity = 52/199 (26.13%), Postives = 82/199 (41.21%), Query Frame = 1
Query:   19 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKY-----ASVVRVLAHTQIRKMKGLKQKKAHLMEIQGHGGTIAEKVDYA 600
            K   PR GSL + PRKR+  H  + +++P+ D     +L  F GYK GMTH++   +   S     E    VTIIET          Y K   G  ++   W   L +++ RR                            + A LEK++       A+ +R++ +T    + G+ +K   +ME    G  +  K +YA
Sbjct:    3 KGHRPRRGSLAYSPRKRSQSHIPRFRSWPESDAEP--KLQGFAGYKVGMTHVIMIDDVKHSLTEGTEISVPVTIIETPAIRVAAIRAYGKDTYGEIAIAEAWTDVLDKDLSRRL--------------------KTAKNPDVNASLEKLETLVESGRANDIRLITYTLPSTLTGVPKKVPDVMETGVSGSDVKAKFEYA 179          
The following BLAST results are available for this feature:
BLAST of EY729026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RL3_PYRAB1.300e-1226.8150S ribosomal protein L3P OS=Pyrococcus abyssi GN=... [more]
RL3_UNCMA2.895e-1229.1350S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_METMA3.781e-1226.8950S ribosomal protein L3P OS=Methanosarcina mazei ... [more]
RL3_METBF4.938e-1229.1550S ribosomal protein L3P OS=Methanosarcina barker... [more]
RL3_THESM1.437e-1127.2150S ribosomal protein L3P OS=Thermococcus sibiricu... [more]
RL3_METAC1.437e-1135.5950S ribosomal protein L3P OS=Methanosarcina acetiv... [more]
RL3_NANEQ1.876e-1125.6250S ribosomal protein L3P OS=Nanoarchaeum equitans... [more]
RL3_METBU3.201e-1126.1350S ribosomal protein L3P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-011-F02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729026 ID=EY729026; Name=EY729026; organism=Citrus sinensis; type=EST; length=875bp
CACGCGTCCGCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGG
ATTTCTTCCAAGGAAGAGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTT
TTCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGT
TACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGGATC
TAAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCC
CTCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGT
CTTCGCTCTTTGAACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAG
AAGAAGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAA
AATACTCAAAGCAGTATGAGACAGATGAAGGGAAGAAAAGTATCCAAGCT
CAGCTGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCA
CACTCAGATTAGGAAAATGAAGGGTTTGAAGCAAAAGAAGGCACACCTGA
TGGAAATCCAGGGTCATGGTGGCACCATTGCTGAAAAAGTTGACTATGCA
TATGGCTTCTTTGANAAGCAAATTCCTGTTGATGCTGTNTCCACANGATG
ATAAGATGATTGACATCATCGGTGTCACGAAAGGTAAAGGGTAATAAAGG
TGTGGTCCCCCGTTGGGGTGTTACCGNCTTCCTCGCCAGATCCCAAAGGT
CTTCGTTAAGGGGCTTGTATTGGTGCCTGGCATCCTGCTAGGTTCCTTCC
CATTGGCATGGGGNTCAAAATGATACCATCCTCTACTAAATGACAAAAAG
TTACACCTGGCCAGGGTTGACAGAA
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