EY728929

Overview
NameEY728929
Unique NameEY728929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_THENV (Probable exosome complex exonuclease 1 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1381 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.216e-13
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 3
Query:  243 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 539
            TR A + AA+LAL DAGI MRD+V   S G ++ T +LDLN +ED  G  D+ VG +P L + TLLQ+D     +   + + LA++G + V    R+ L
Sbjct:  134 TRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVGYMPNLRRYTLLQLDGAWGRDKLLEALNLAVKGAEFVYQKARDAL 232          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_PYRAR (Probable exosome complex exonuclease 1 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1937 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.588e-13
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 3
Query:  243 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 539
            TR A + AA+LAL DAGI MRD+V   S G ++   +LDLN +ED+ G  D+ VG +P L +  LLQ+D       F   + LA++G + V    R+ L
Sbjct:  134 TRVASLTAASLALADAGIYMRDLVVGVSVGLVDGVVVLDLNGLEDNYGEGDLPVGYMPNLKRFVLLQLDGAWKREVFLQALNLAVKGAEYVYQIARDAL 232          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_METMA (Probable exosome complex exonuclease 1 OS=Methanosarcina mazei GN=MM_2623 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.588e-13
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 539
            GTR+A INA+++AL DAGIPM+ ++TSC+ G ++   +LDLN  ED+ G  D  V +     ++TL+QMD  L  +  +  ++L  +GCK +    + VL
Sbjct:  135 GTRTAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFPVAMTQD-GEITLIQMDGNLTPDEIKQGLELVKKGCKEILEIQQAVL 233          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_SULTO (Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii GN=ST0443 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.537e-13
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLE 563
            GTR   + AA++AL DAGIPMRD++   + G  +   +LDLN  ED  G  D+ V ++P+L +V LLQ++  +    F   +++A +G + + N  +E +     +L+
Sbjct:  138 GTRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMMPSLKQVALLQLNGNMTPQEFRQALEMAQKGIETIYNLEKEAIRSKYAELK 245          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: RRP41_SCHPO (Exosome complex component ski6 OS=Schizosaccharomyces pombe GN=ski6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.344e-12
Identity = 40/102 (39.22%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  249 SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 554
            ++CINA TLAL DAGIP++D V   +AG + S  LLDLN +E+SA    +TV +L  + KV  +Q++  +  +  E VM +AI G + + N ++  + ++ K
Sbjct:  135 ASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESALS-WLTVAVLGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQSAK 235          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_SULAC (Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius GN=Saci_0610 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.293e-12
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 539
            GTR   + AA++AL DAGIPMRD++   + G  + + +LDLN  ED  G  D+ + +LP+L +V LLQ++  +  + F    +LA +G  ++    +E L
Sbjct:  134 GTRLVALMAASMALADAGIPMRDLIAGVAVGKADGSLVLDLNEQEDMWGEADMPIAVLPSLGQVVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEAL 233          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: RRP41_YEAST (Exosome complex component SKI6 OS=Saccharomyces cerevisiae GN=SKI6 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.324e-11
Identity = 38/106 (35.85%), Postives = 65/106 (61.32%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 557
            G   + IN  TLAL DAGI M D ++  S G  ++TPLLD N +E++A    VT+G++   +K++LL ++ K+P +  E+V+ + I G   V + + E L ++ ++
Sbjct:  134 GIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMS-TVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQK 238          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_AERPE (Probable exosome complex exonuclease 1 OS=Aeropyrum pernix GN=APE_1447 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 34/100 (34.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 539
            GTR+A + AA+LAL DAGIPMR +V   + G +    ++D++ +ED  G  D+ V   P + ++TLLQ++  L    F   + +A+     V    +E +
Sbjct:  135 GTRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAAPDIGEITLLQLNGVLTGEEFRTALAMALRAIDRVVEMEKEAI 234          
The following BLAST results are available for this feature:
BLAST of EY728929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ECX1_THENV1.216e-1342.42Probable exosome complex exonuclease 1 OS=Thermopr... [more]
ECX1_PYRAR1.588e-1341.41Probable exosome complex exonuclease 1 OS=Pyrobacu... [more]
ECX1_METMA1.588e-1340.00Probable exosome complex exonuclease 1 OS=Methanos... [more]
ECX1_SULTO3.537e-1334.26Probable exosome complex exonuclease 1 OS=Sulfolob... [more]
RRP41_SCHPO1.344e-1239.22Exosome complex component ski6 OS=Schizosaccharomy... [more]
ECX1_SULAC2.293e-1237.00Probable exosome complex exonuclease 1 OS=Sulfolob... [more]
RRP41_YEAST4.324e-1135.85Exosome complex component SKI6 OS=Saccharomyces ce... [more]
ECX1_AERPE9.632e-1134.00Probable exosome complex exonuclease 1 OS=Aeropyru... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728929 ID=EY728929; Name=EY728929; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGAGCAGATGGAGGTAGCTTATATTTCAATCATAAGTCCCT
ATTGATGATCCCCTAGACGACAAGAACCTCTTATATTATCTCTCTCTCAT
CCTCTGATTCTGTGTGTTTGCTTGACAGTGCATTTGTATACTTCCCTTTT
CTTTTTCCTTTTTTTCTGCCACGACATTGAGTAGTTCATCTTCTGAAATA
GGAAATGTCTCTTGCTGATTTTGTAATGTGTGGTCAACAGGGACAAGATC
CGCATGTATTAATGCCGCAACATTAGCCCTTCAAGATGCTGGTATTCCAA
TGCGCGATATTGTTACTTCATGTAGTGCTGGATACCTCAATAGCACTCCT
CTTCTTGATTTGAATTATGTTGAAGATAGTGCTGGAGGCCCTGATGTCAC
TGTAGGTATTTTACCTACATTGGACAAAGTTACTCTTCTTCAGATGGATG
CCAAGTTACCCACAAATACCTTTGAAGATGTCATGCAACTTGCAATTGAA
GGCTGTAAGGCAGTGGCAAATTACATTCGAGAAGTATTGCTAGAGAATAC
CAAGCAGTTGGAATGCCGCCGGGGTTTATGATAGATAGTCATGGCAAGGT
AGTTGTTCTTTGACTGTTGCCTGACTGGTGTNGTTTGCCCTGNTCATTTT
CTGACTTTGAATTGTACCATCTTTCACATGGAAATGTGAGATCATACAGG
GATTACTGAATGGNCANTGTTACTCAAATCCAACCTGGTCTCTTNAAGCA
TGGTTTGCTTATTCCCAATTTGTTGTGGAAAATTTTATTACACAGATTAT
CCCTTGGGTGTATTGGTCTGGCTACTATTAATTTTGTATGGAGCTCCTGA
AAGCATTACTAATACCTAAGAAAATCTGGTTTCCCATTTCCATTG
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