EY728912

Overview
NameEY728912
Unique NameEY728912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728912_ssr299 microsatellite EY728912_ssr299:299..313. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:77..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_STAES (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 12228) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.858e-20
Identity = 69/234 (29.49%), Postives = 109/234 (46.58%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPD---KGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF-DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRH---LGPSMIQQMQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKITFPEE 772
            YYE+LGV+K+AS+D++KKAYRK + K HPD   + G  EKFKE+++AYEVLSD  KR  YDQ+G D  +            F                          +D+ + + ++ E+   GT K++S+ ++V                          +VS+     LG    +Q+   C +C+G+G+    ++  P CKG+    +   LEV V +G  N Q++    E
Sbjct:    6 YYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRANYDQFGHDGPQGGFGSQGFGGSDFGGFEDIFSSFFGGGSRQRDPNAPRKGDDLQYTMTITFEEAVFGTKKEISIKKDVTCHTCNGDGAKPGTSKKTCSYCNGAGRVSVEQNTILGRVRTEQV---CPKCEGSGQEF--EEPCPTCKGKGTENKTVKLEVTVPEGVDNEQQVRLAGE 234          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_STAEQ (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.039e-20
Identity = 69/234 (29.49%), Postives = 109/234 (46.58%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPD---KGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF-DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRH---LGPSMIQQMQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKITFPEE 772
            YYE+LGV+K+AS+D++KKAYRK + K HPD   + G  EKFKE+++AYEVLSD  KR  YDQ+G D  +            F                          +D+ + + ++ E+   GT K++S+ ++V                          +VS+     LG    +Q+   C +C+G+G+    ++  P CKG+    +   LEV V +G  N Q++    E
Sbjct:    6 YYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRVNYDQFGHDGPQGGFGSQGFGGSDFGGFEDIFSSFFGGGSRQRDPNAPRKGDDLQYTMTITFEEAVFGTKKEISIKKDVTCHTCNGDGAKPGTSKKTCSYCNGAGRVSVEQNTILGRVRTEQV---CPKCEGSGQEF--EEPCPTCKGKGTENKTVKLEVTVPEGVDNEQQVRLAGE 234          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ2_AQUAE (Chaperone protein dnaJ 2 OS=Aquifex aeolicus GN=dnaJ2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.582e-20
Identity = 73/260 (28.08%), Postives = 105/260 (40.38%), Query Frame = 2
Query:   77 SDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK-----------EXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND------KDRXPQCKGEKVIQE-------------KKVLEVIVEKGDANGQKI 757
            S    YYEILGV +NASQ+++KKAYR+   K HPD    P   EKFKE+ +AY+VLSDPEKR++YD YG  A +           E         + FD                        ED++ P++++LE+ + GT+  + + R V                                 G    +     C  C G GET+        +   P C GE VI E             K+ ++V +  G  +G K+
Sbjct:    4 STKKDYYEILGVPRNASQEEIKKAYRRLVRKYHPDICKKPECEEKFKEINEAYQVLSDPEKRKLYDMYGHAAFEGAGAQQRVETTEIPPIEEILREFFDFDIGSIFERATGRRRARRRRSVKGEDIVVPVEITLEEAFKGTTVPIEVEREVPCSACG---------------------------GTGYDESKSRTCPTCGGRGETVQGNWFFQVRQTCPTCGGEGVIYENCHACTGRGYGLVKETIKVKIPPGVRDGSKL 236          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNJB4_PONAB (DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.596e-20
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 289
            YY ILG+ K AS +D+KKAYRK A+K HPDK   P   EKFKE+A+AYEVLSDP+KREIYDQ+GE+ LK
Sbjct:    5 YYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLK 73          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNJB4_MOUSE (DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.596e-20
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 289
            YY ILG+ K A+ +D+KKAYRK A+K HPDK   P   EKFKE+A+AYEVLSDP+KREIYDQ+GE+ LK
Sbjct:    5 YYHILGIDKGATDEDVKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLK 73          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNJB4_HUMAN (DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.596e-20
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 289
            YY ILG+ K AS +D+KKAYRK A+K HPDK   P   EKFKE+A+AYEVLSDP+KREIYDQ+GE+ LK
Sbjct:    5 YYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLK 73          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_TERTT (Chaperone protein dnaJ OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.596e-20
Identity = 77/246 (31.30%), Postives = 108/246 (43.90%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAH------DPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKITFPEETDEAPELSP 799
            YYE+LGV+++ S+ DLKKAYRK A+K HPD+  D     EKFKE ++AYEVLSD +KR  YDQ+G   ++        A       D F                          D+ + L +SLED   GTS K+ +   V                      G   +V ++  G   +QQ    C  C+G G+TI+D     +C G   ++E K L V V  G   G +I    E +   +  P
Sbjct:    6 YYEVLGVARDVSEQDLKKAYRKVAMKFHPDRNPDDASAEEKFKEASEAYEVLSDKQKRAAYDQFGHAGVEGQGGMGGGAEGFGSFSDIF--GDVFGDIFGGAGGGRGRGGPSRGADLRYTLDLSLEDAVRGTSVKIKVPTLVSCTNCGGSGAKPGTTATTCNTCGGHGQVRMQQ-GFFSVQQ---TCPTCRGQGKTISDP--CNKCHGHGRVEETKTLSVKVPAGVDTGDRIRLAGEGEAGADGGP 243          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_ANAMM (Chaperone protein dnaJ OS=Anaplasma marginale (strain St. Maries) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.123e-19
Identity = 75/231 (32.47%), Postives = 101/231 (43.72%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF-----DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKI 757
            YYEIL VS+NAS +++KK+YRK   K HPDK  GD    EKFK++++AYEVLS+PEKR  YD+YG                 F     DI                        D+ + ++VSLED + G    +S   NV                           V  R  G   I+++   CN C G GE I +K R  +C G   ++ +  L V V KG   G K+
Sbjct:    6 YYEILEVSRNASAEEIKKSYRKMVFKYHPDKNPGDKKAEEKFKKISEAYEVLSNPEKRAAYDRYGHSTFTSGGASGFDFTSGFSTDFSDIFQDFFGGGFGKSQRASSREHLRGSDLRYDVEVSLEDAFKGIKVPISYVTNVKCSSCSGIGSEGAVNSVKCGNCNGAGSVRTRK-GFLTIEEV---CNVCNGEGEVIKNKCR--RCGGSGRVRNEVSLLVTVPKGIETGNKV 230          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_ANAMF (Chaperone protein dnaJ OS=Anaplasma marginale (strain Florida) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.123e-19
Identity = 75/231 (32.47%), Postives = 101/231 (43.72%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF-----DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKI 757
            YYEIL VS+NAS +++KK+YRK   K HPDK  GD    EKFK++++AYEVLS+PEKR  YD+YG                 F     DI                        D+ + ++VSLED + G    +S   NV                           V  R  G   I+++   CN C G GE I +K R  +C G   ++ +  L V V KG   G K+
Sbjct:    6 YYEILEVSRNASAEEIKKSYRKMVFKYHPDKNPGDKKAEEKFKKISEAYEVLSNPEKRAAYDRYGHSTFTSGGASGFDFTSGFSTDFSDIFQDFFGGGFGKSQRASSREHLRGSDLRYDVEVSLEDAFKGIKVPISYVTNVKCSSCSGIGSEGAVNSVKCGNCNGAGSVRTRK-GFLTIEEV---CNVCNGEGEVIKNKCR--RCGGSGRVRNEVSLLVTVPKGIETGNKV 230          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: XDJ1_YEAST (DnaJ protein homolog XDJ1 OS=Saccharomyces cerevisiae GN=XDJ1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.915e-19
Identity = 70/257 (27.24%), Postives = 106/257 (41.25%), Query Frame = 2
Query:   89 KYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPE-------KFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDP---------FDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVI------XXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETI----NDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKITFPEETDE 781
            + Y++LGV+++A+  ++K AYRK A+K+HPDK  D +       KFKE+  AYE+LSDPEK+  YD YG+D             D          F+                        +D+   + ++L+DLY G   K  L R VI                           G G K  ++  GP ++      C +C G G+      N K+  P C G  ++ +K+++ V V  G      IT     DE
Sbjct:    9 RLYDVLGVTRDATVQEIKTAYRKLALKHHPDKYVDQDSKEVNEIKFKEITAAYEILSDPEKKSHYDLYGDDNGAASSGGANGFGDEDFMNFFNNFFNNGSHDGNNFPGEYDAYEEGNSTSSKDIDIDISLTLKDLYMGKKLKFDLKRQVICIKCHGSGWKPKRKIHVTHDVECESCAGKGSKERLKRFGPGLVASQWVVCEKCNGKGKYTKRPKNPKNFCPDCAGLGLLSKKEIITVNVAPGHHFNDVITVKGMADE 265          
The following BLAST results are available for this feature:
BLAST of EY728912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_STAES3.858e-2029.49Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ_STAEQ5.039e-2029.49Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ2_AQUAE6.582e-2028.08Chaperone protein dnaJ 2 OS=Aquifex aeolicus GN=dn... [more]
DNJB4_PONAB8.596e-2068.12DnaJ homolog subfamily B member 4 OS=Pongo abelii ... [more]
DNJB4_MOUSE8.596e-2066.67DnaJ homolog subfamily B member 4 OS=Mus musculus ... [more]
DNJB4_HUMAN8.596e-2068.12DnaJ homolog subfamily B member 4 OS=Homo sapiens ... [more]
DNAJ_TERTT8.596e-2031.30Chaperone protein dnaJ OS=Teredinibacter turnerae ... [more]
DNAJ_ANAMM1.123e-1932.47Chaperone protein dnaJ OS=Anaplasma marginale (str... [more]
DNAJ_ANAMF1.123e-1932.47Chaperone protein dnaJ OS=Anaplasma marginale (str... [more]
XDJ1_YEAST1.915e-1927.24DnaJ protein homolog XDJ1 OS=Saccharomyces cerevis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-C06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728912 ID=EY728912; Name=EY728912; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGCGCGTCTACTCTGAAGCTCTGAAATTTTTTAGTACAAGA
AGCTGTTCGGAAGCGCGCCAAAGAAAAGCGATAACACAAAGTACTATGAG
ATTCTCGGAGTCTCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTTA
TAGGAAAGCCGCCATCAAAAACCATCCTGACAAGGGCGGTGATCCTGAGA
AGTTTAAAGAGTTGGCACAAGCGTATGAGGTTCTGAGTGACCCAGAGAAG
CGTGAAATATATGATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGGG
TGGTGGTGGTGGTGCCCATGACCCATTCGACATATTCCAATCCTTCTTCG
GTGGCAGCCCATTTGGTGGTGGGAGCAGCAGAGGAAGAAGGCAAAGGAGG
GGAGAGGACGTAATCCATCCCCTCAAGGTTTCGTTGGAGGATCTGTACAA
TGGGACATCTAAGAAGCTCTCGCTCTCCCGCAATGTAATCTGCACCAAGT
GCAAAGGGAAGGGGTCTAAGTCAGGTGCATCAATGAAATGTTCTGGCTGC
CAGGGATCTGGAATGAAAGTTTCAATAAGACACCTTGGCCCCTCTATGAT
TCAACAAATGCAGCATCCTTGCAATGAGTGCAAGGGTACTGGAGAAACAA
TCAATGACAAGGATCGCTNGCCACAATGTAAGGGTGAGAAAGTCATTCAG
GAGAAAAAAGTCTTGGAGGTTATTGTTGAAAAGGGGGATGCAAATGGACA
GAAGATTACGTTCCCTGAAGAAACTGATGAAGCGCCCGAACTGTCACCGG
TGACATGGATTTGTTCTACCACAGAAAGACACCCGAAATTAAGCGAAAGG
GTGATGACCTATGGTTGAGCCCACCTGGTCCTGACAGA
back to top