EY728912

Overview
NameEY728912
Unique NameEY728912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728912_ssr299 microsatellite EY728912_ssr299:299..313. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:77..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_HAES2 (Chaperone protein dnaJ OS=Haemophilus somnus (strain 2336) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKE 292
            YYEILGV K A   ++K+AY++ A+K HPD+  GD E   KFKE+ +AYEVL+D EKR +YDQYG  A ++
Sbjct:    6 YYEILGVQKGADDKEIKRAYKRLAMKYHPDRTKGDKESEEKFKEINEAYEVLADKEKRAMYDQYGHAAFEQ 76          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAP8 (Chaperone protein dnaJ OS=Cyanothece sp. (strain PCC 8801) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPD---KGGDPEKFKELAQAYEVLSDPEKREIYDQYGE 277
            YYE LGV +NAS++D+K+AYR+ A K HPD   + G  ++FKE+ +AYEVLS+PE R  YDQ+GE
Sbjct:    5 YYETLGVDRNASKEDIKRAYRRLARKYHPDINKEAGAEDRFKEINRAYEVLSEPETRARYDQFGE 69          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNJB8_MOUSE (DnaJ homolog subfamily B member 8 OS=Mus musculus GN=Dnajb8 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF 328
            YYE+LGV  +AS +D+KKAYRK A++ HPDK  D      +KFK++++AYEVLSD +KR +YD+ G D  +           PF
Sbjct:    4 YYEVLGVQSSASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSDSKKRSVYDRAGCDRWRAGGGANVPHSSPF 87          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_MANSM (Chaperone protein dnaJ OS=Mannheimia succiniciproducens (strain MBEL55E) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 62/240 (25.83%), Postives = 102/240 (42.50%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDK-GGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKE---XXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQ------HPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKITFPEE 772
            YYE LGV K A + ++K+AY++ A+K HPD+  GD    EKFKE+ +AYE+L D EKR  YDQYG  A ++                                        ED+ + ++++LE+   GT+K + ++                        +GS ++      G   +++ Q        C  C+G+G+ I    +   C G+  + +KK L V +  G   G ++    E
Sbjct:    6 YYETLGVQKGADEKEIKRAYKRLAMKYHPDRTNGDKAAEEKFKEVNEAYEILMDKEKRAAYDQYGHAAFEQGGFGGGAGGFGGGFGGFGGFEDIFSEMFGGGASRQRVVRGEDLRYDIEITLEEAVRGTTKDIKIN----------TLAACDHCDGSGAEKGSKVETCPTCHGHGRVRRQQGFFMTETTCPTCQGSGKKIEKPCK--HCHGDGRVHKKKNLSVKIPAGVDTGNQLRLSGE 233          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_HAEDU (Chaperone protein dnaJ OS=Haemophilus ducreyi GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 63/251 (25.10%), Postives = 103/251 (41.04%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG----GDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE-----XXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQ------HPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKITFPEETDEAPELSP 799
            YYE+LG+ K A++ D+K+AY++ A K HPDK        EKFK++ +AYE+L+D +KR  YDQYG  A ++                F+                        +D+ + +++SLE+   G  K + LS                         G+ ++      G   I++ Q        C  C GTG+ I  +     C G+  +Q+ K L V +  G   G ++    E +     +P
Sbjct:    6 YYEVLGLQKGATEKDIKRAYKRLAAKYHPDKNQGSKDSEEKFKQITEAYEILTDDQKRAAYDQYGHAAFEQGSSNGGFNGFGGGFGGFE-DIFSEMFGGGFGGGSRRQHVVRGQDLRYDIEISLEEAVKGCKKDIRLS----------TLAECDNCHGTGAEAGTKVENCPHCHGAGRIRRQQGFFVTEAVCPSCHGTGKKI--EKPCHSCHGDGRVQKAKNLSVTIPAGVDTGNQLRLSGEGEAGENGAP 243          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_GLUOX (Chaperone protein dnaJ OS=Gluconobacter oxydans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALK 289
            YYE L VS+ ASQD+LKKA+RK A++ HPD+  GD    +KFKE+ +AY+VL D +KR  YD+YG DA +
Sbjct:    7 YYESLEVSRTASQDELKKAFRKQAMRYHPDRNPGDDAAEQKFKEINEAYDVLKDEQKRAAYDRYGHDAFE 76          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_BACTN (Chaperone protein dnaJ OS=Bacteroides thetaiotaomicron GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 2
Query:   77 SDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GD---PEKFKELAQAYEVLSDPEKREIYDQYG 274
            ++   YYE+L V+K A+ +++KKAYRK AI+ HPDK  GD    EKFKE A+AY+VLS+P+KR  YDQ+G
Sbjct:    2 AEKRDYYEVLEVTKTATVEEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSNPDKRSRYDQFG 71          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_BACHK (Chaperone protein dnaJ OS=Bacillus thuringiensis subsp. konkukian GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYG 274
            YYE+LG+SK AS+D++KKAYR+ A K HPD   +    EKFKE+ +AYEVLSD +KR  YDQ+G
Sbjct:    6 YYEVLGLSKGASKDEIKKAYRRLAKKYHPDVSKEENAIEKFKEVQEAYEVLSDDQKRAQYDQFG 69          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_BACCZ (Chaperone protein dnaJ OS=Bacillus cereus (strain ZK / E33L) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYG 274
            YYE+LG+SK AS+D++KKAYR+ A K HPD   +    EKFKE+ +AYEVLSD +KR  YDQ+G
Sbjct:    6 YYEVLGLSKGASKDEIKKAYRRLAKKYHPDVSKEENAIEKFKEVQEAYEVLSDDQKRAQYDQFG 69          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_BACCQ (Chaperone protein dnaJ OS=Bacillus cereus (strain Q1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.397e-14
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYG 274
            YYE+LG+SK AS+D++KKAYR+ A K HPD   +    EKFKE+ +AYEVLSD +KR  YDQ+G
Sbjct:    6 YYEVLGLSKGASKDEIKKAYRRLAKKYHPDVSKEENAIEKFKEVQEAYEVLSDDQKRAQYDQFG 69          
The following BLAST results are available for this feature:
BLAST of EY728912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_HAES24.132e-1454.93Chaperone protein dnaJ OS=Haemophilus somnus (stra... [more]
DNAJ_CYAP84.132e-1456.92Chaperone protein dnaJ OS=Cyanothece sp. (strain P... [more]
DNJB8_MOUSE5.397e-1446.43DnaJ homolog subfamily B member 8 OS=Mus musculus ... [more]
DNAJ_MANSM5.397e-1425.83Chaperone protein dnaJ OS=Mannheimia succiniciprod... [more]
DNAJ_HAEDU5.397e-1425.10Chaperone protein dnaJ OS=Haemophilus ducreyi GN=d... [more]
DNAJ_GLUOX5.397e-1455.71Chaperone protein dnaJ OS=Gluconobacter oxydans GN... [more]
DNAJ_BACTN5.397e-1455.71Chaperone protein dnaJ OS=Bacteroides thetaiotaomi... [more]
DNAJ_BACHK5.397e-1459.38Chaperone protein dnaJ OS=Bacillus thuringiensis s... [more]
DNAJ_BACCZ5.397e-1459.38Chaperone protein dnaJ OS=Bacillus cereus (strain ... [more]
DNAJ_BACCQ5.397e-1459.38Chaperone protein dnaJ OS=Bacillus cereus (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-C06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728912 ID=EY728912; Name=EY728912; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGCGCGTCTACTCTGAAGCTCTGAAATTTTTTAGTACAAGA
AGCTGTTCGGAAGCGCGCCAAAGAAAAGCGATAACACAAAGTACTATGAG
ATTCTCGGAGTCTCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTTA
TAGGAAAGCCGCCATCAAAAACCATCCTGACAAGGGCGGTGATCCTGAGA
AGTTTAAAGAGTTGGCACAAGCGTATGAGGTTCTGAGTGACCCAGAGAAG
CGTGAAATATATGATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGGG
TGGTGGTGGTGGTGCCCATGACCCATTCGACATATTCCAATCCTTCTTCG
GTGGCAGCCCATTTGGTGGTGGGAGCAGCAGAGGAAGAAGGCAAAGGAGG
GGAGAGGACGTAATCCATCCCCTCAAGGTTTCGTTGGAGGATCTGTACAA
TGGGACATCTAAGAAGCTCTCGCTCTCCCGCAATGTAATCTGCACCAAGT
GCAAAGGGAAGGGGTCTAAGTCAGGTGCATCAATGAAATGTTCTGGCTGC
CAGGGATCTGGAATGAAAGTTTCAATAAGACACCTTGGCCCCTCTATGAT
TCAACAAATGCAGCATCCTTGCAATGAGTGCAAGGGTACTGGAGAAACAA
TCAATGACAAGGATCGCTNGCCACAATGTAAGGGTGAGAAAGTCATTCAG
GAGAAAAAAGTCTTGGAGGTTATTGTTGAAAAGGGGGATGCAAATGGACA
GAAGATTACGTTCCCTGAAGAAACTGATGAAGCGCCCGAACTGTCACCGG
TGACATGGATTTGTTCTACCACAGAAAGACACCCGAAATTAAGCGAAAGG
GTGATGACCTATGGTTGAGCCCACCTGGTCCTGACAGA
back to top