EY728912

Overview
NameEY728912
Unique NameEY728912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728912_ssr299 microsatellite EY728912_ssr299:299..313. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:77..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_STRT2 (Chaperone protein dnaJ OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.160e-18
Identity = 65/233 (27.90%), Postives = 101/233 (43.35%), Query Frame = 2
Query:   80 DNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK----EXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKI 757
            +NT+YY+ LG+SK+ASQD++K+AYRK + K HPD   +P   EK+KE+ +AYE LSD +KR  YDQYG D       +           F                         +D+ + + +S E+   G  K++  +R V                           +++    P  + + Q  C+ C GTG+ I  KD    C G    ++   + V +  G   GQ+I
Sbjct:    2 NNTEYYDRLGLSKDASQDEIKRAYRKLSKKYHPDINKEPGAEEKYKEILEAYETLSDAQKRAAYDQYGPDGANGFGGQGSFGGFDGGAGFGGFEDIFSSFFGGGATRNPNAPRQGDDLQYRVNLSFEEAVFGAEKEIHYNREVTCKTCSGSGAKPGTSPVTCGRCHGHGVINVDTQTPLGMMRRQVTCDVCHGTGQEI--KDPCQTCHGTGREKQSHTVSVKIPAGVETGQQI 232          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_STRT1 (Chaperone protein dnaJ OS=Streptococcus thermophilus (strain CNRZ 1066) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.160e-18
Identity = 65/233 (27.90%), Postives = 101/233 (43.35%), Query Frame = 2
Query:   80 DNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK----EXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKI 757
            +NT+YY+ LG+SK+ASQD++K+AYRK + K HPD   +P   EK+KE+ +AYE LSD +KR  YDQYG D       +           F                         +D+ + + +S E+   G  K++  +R V                           +++    P  + + Q  C+ C GTG+ I  KD    C G    ++   + V +  G   GQ+I
Sbjct:    2 NNTEYYDRLGLSKDASQDEIKRAYRKLSKKYHPDINKEPGAEEKYKEILEAYETLSDAQKRAAYDQYGPDGANGFGGQGSFGGFDGGAGFGGFEDIFSSFFGGGATRNPNAPRQGDDLQYRVNLSFEEAVFGAEKEIHYNREVTCKTCSGSGAKPGTSPVTCGRCHGHGVINVDTQTPLGMMRRQVTCDVCHGTGQEI--KDPCQTCHGTGREKQSHTVSVKIPAGVETGQQI 232          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEHT (Chaperone protein dnaJ OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.160e-18
Identity = 70/252 (27.78%), Postives = 109/252 (43.25%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDK-GGDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKE-----XXXXXXXAHDPF-DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQ------MQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKITFPEETDEAPELSP 799
            YYE+LGVSK+AS+ D+KKAY++ A+K HPD+  GD E   KFKE+ +AYE+L+D +KR+ YDQYG  A ++             H  F D+                        D+ + + +SLE+   G   ++ +   V                      GS  K      G   +Q       +Q  C  C+G G+ I++      C G+  +++ K L V +  G   G +I    E +     +P
Sbjct:    6 YYEVLGVSKDASERDIKKAYKRLAMKYHPDRTSGDKELETKFKEVKEAYEILTDAQKRQTYDQYGHAAFEQGGGGGGHGGFGGGHGDFGDVFGDVFGDIFGGGGGRRQSRQQRGSDLRYNMDLSLEEAVRGKEVEIKIPTWV----------GCDPCDGSGAKAGSKPKTCTTCHGAGQVQMRQGFFAVQQTCPTCQGQGQIISNP--CDSCHGQGRVEKTKTLSVKIPAGVDTGDRIRLTGEGEAGMHGAP 245          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_MARMS (Chaperone protein dnaJ OS=Marinomonas sp. (strain MWYL1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.160e-18
Identity = 72/241 (29.88%), Postives = 102/241 (42.32%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD-PE---KFKELAQAYEVLSDPEKREIYDQYGEDALK-EXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKITFPEETDEAPELSP 799
            YY++LGV+K+A + D+KKAYR  A K HPDK  D PE   KFKELA+AYE+LS  +KR  YD++G D +  +           F                          D+ + L++ LE    G  +K+ +   V                      G   +V +   G   +QQ    C EC G G+ I+D  R   C G+  +QE K L V +  G   G +I    E +      P
Sbjct:    6 YYDVLGVAKDADKKDIKKAYRSLANKYHPDKNPDNPEALDKFKELAEAYEILSSDDKRAAYDRFGHDGVNGQAGGYGGAGAGGFSDIFGDVFGDIFGGGGGGQSRTRRGSDLRYTLELDLEQAVWGCEEKIRIPTLVNCKTCDGSGAKKGSTPKTCGTCGGAGQVRMSQ-GFFSVQQ---TCPECHGAGQVISDPCR--DCHGQGRVQEYKTLNVKIPAGVDTGDRIRLSGEGEAGTHGGP 240          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSL (Chaperone protein dnaJ OS=Geobacter sulfurreducens GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.160e-18
Identity = 72/247 (29.15%), Postives = 104/247 (42.11%), Query Frame = 2
Query:   77 SDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGE-----DALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKV--SIRHLGPSMIQQ----MQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKITFPEE 772
            +D   YYE+LGV KNAS  ++KKA+RK AI+ HPDK  D     EKFKE+ +AYEVLSDP+KR  YDQ+G                  A  PF                         +D+ + +++S E+   G  K++ +                          G+  KV  + R  G    QQ    +   CN C G G  +  ++    C+G  +I++ K L V V  G   G ++    E
Sbjct:    3 ADKRDYYEVLGVHKNASDTEIKKAFRKLAIQYHPDKNPDDKEAEEKFKEITEAYEVLSDPQKRAQYDQFGHAGVGAGGFSGGGFGGFGAGTPFG-DIFGDIFGDIFGGRPRGSRGRRGDDLQYNMELSFEEAAFGAEKEIQV----------PYGKRCGDCGGSGAKPGTEPKVCPTCRGAGQVRFQQGFFSVSKTCNHCNGEGRVV--ENPCTSCRGSGMIRDTKTLSVKVPAGVETGTRLKLSGE 236          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_FRAP2 (Chaperone protein dnaJ OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.160e-18
Identity = 69/238 (28.99%), Postives = 104/238 (43.70%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPE----KFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXA-----HDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKITFPEETD 778
            YYEIL VSK AS  ++K+AYRK A+K HPD+  D +    KFKE+++AYE+LSD  KR  YDQ+G   + +              D FD                         D+ + +++SLE+ + G  K++++ R                        G G   +IR          +  C  C GTG +I   D    C G   I+++K ++V + +G  NG +I    E D
Sbjct:    6 YYEILNVSKTASGVEIKRAYRKLAMKYHPDRNPDDKEAEIKFKEISEAYEILSDDGKRSRYDQFGHAGVNQQGGAGSAGGFGGFEDIFD-----TFFGGGTSRGSNRSRASRGSDLEYTIEISLEEAFFGVEKEINIPRMESCDSCDGTGSKSKTKTTCHACHGQG---TIRR--QQGFFAFEQTCPVCNGTGSSI--ADPCDDCYGSGKIKKQKTIKVKIPEGVDNGDRIRLQGEGD 231          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_YERE8 (Chaperone protein dnaJ OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.045e-18
Identity = 67/242 (27.69%), Postives = 109/242 (45.04%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKE-XXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSL-SRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKITFPEETDEAPELSP 799
            YYE+LGV K+A + ++KKAY++ A+K HPD+  D     E FKE+ +AYE+L+DP+KR  YDQYG  A ++             D                         D+ + + ++LE+   G +K++ + + N                      +G+G +V +R  G   +QQ    C  C G+G+ I  KD   +C G   +++ K L V +  G   G +I    E +     +P
Sbjct:    6 YYEVLGVKKDADEREIKKAYKRLAVKYHPDRNQDENDTGENFKEVKEAYEILTDPQKRAAYDQYGHAAFEQGGMGGGGFGGGGADFTDIFGDVFGDIFGGGRRQRASRGSDLRYNMDLTLEEAVRGVTKEIRIPTLNECDVCHGSGAKPGSSPVTCSTCRGAG-QVHMRQ-GFFTVQQ---ACPTCHGSGQII--KDPCNKCHGHGRVEKSKTLSVKIPAGVDTGDRIRLSGEGEAGEHGAP 240          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSCS (Chaperone protein dnaJ OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.045e-18
Identity = 73/256 (28.52%), Postives = 105/256 (41.02%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPF---DIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKITFPEETDEAPELSPV--TWICSTTERHP 835
            YYE+LGV +NASQD++KKA+R+ A + HPD    P+   KFKE+ +AYEVLSDPEKR +YD++G               DPF   D                         D+ + L +S E+   G  K +   R  +                       G    IR   P         C+ C+G G  I    R  +C+GE  I++ + + V V  G  +  +I    E D  P   P    ++    + HP
Sbjct:    7 YYEVLGVQRNASQDEIKKAFRRLARQYHPDVNKAPDAEAKFKEINEAYEVLSDPEKRSMYDRFG-----HAGPTAAPGFDPFASADPFSSIFETFFGGTMRGTQRGPQRGADLRYTLSISFEEAIFGVEKTIEYRR--METCPACRGSGAEPGTEPVRCPKCGGLGEIRQRAPLFNMVTVTTCDMCRGEGTVIAIPCR--ECRGEGRIRQTRKITVRVPPGVDSSAQIRISGEGDAGPRGGPYGNLYVVIDVQPHP 253          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_HALHL (Chaperone protein dnaJ OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.045e-18
Identity = 74/263 (28.14%), Postives = 112/263 (42.59%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAH---------DPFDIXXXXXXXXXXXXXXXXXXXXXXXE--DVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKV--------SIRHLGPSMIQQ----MQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKITFPEETDEAPELSP 799
            YYE+LGV+KNAS  ++KKAYR+ A K HPD+  GD    E+FKE+ +AYEVLSD +KR  YDQ+G   +          +         D  DI                          D+ + L++SLED   GT +++ +  +V                     +GSG +         + +  G   +QQ    +Q  C  C G G  + D    P+C+G   ++++K L V +  G   G +I    E +      P
Sbjct:    6 YYEVLGVNKNASDAEIKKAYRRMAQKFHPDRNPGDEESAERFKEVKEAYEVLSDAQKRAAYDQFGHAGVDPSAGGGPRGYGGGAGPGGPDFSDIFSDVFGDIFGSGGGRGGGRSRAFRGADLRYTLELSLEDAVRGTEEQIQVPTHV----------------ECDACKGSGSRAGSKPQTCPTCKGHGDVRVQQGFFSIQQTCPRCGGEGTMVTDP--CPKCRGRGRVEDRKTLNVRIPAGVDTGDRIRLSGEGEPGERGGP 250          
BLAST of EY728912 vs. ExPASy Swiss-Prot
Match: DNAJ_FUSNP (Chaperone protein dnaJ OS=Fusobacterium nucleatum subsp. polymorphum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.045e-18
Identity = 69/248 (27.82%), Postives = 104/248 (41.94%), Query Frame = 2
Query:   92 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDP--FDI-------------XXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRXPQCKGEKVIQEKKVLEVIVEKGDANGQKITF 763
            YYE+LGV KNAS++D+KKAYRKAA+K HPDK  +          EKFKE+ +AY+VLSD EK++ YDQ+G  A ++         +   FD                                      D+ + L+++LE+   G  K +   R                        G G  +  +      + Q Q  C +C GTG+    K +   C+G    +E    ++ V  G  +GQK+ +
Sbjct:    6 YYEVLGVDKNASENDIKKAYRKAAMKYHPDKFANATDAEKKDAEEKFKEINEAYQVLSDNEKKQQYDQFGHAAFEQGGAGFGGGFNAGGFDFGDIFGDNIFGGGGGFGGFEGFSGFGGSSRRSYVEPGNDLRYNLEITLEEAAKGVEKTIKYKRTGKCEHCHGTGAEDDKMKTCPTCNGQG-TIKTQQRTILGVMQSQSVCPDCHGTGKVPEKKCK--HCRGTGTAKETVEKKINVPAGIDDGQKLKY 250          
The following BLAST results are available for this feature:
BLAST of EY728912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_STRT26.160e-1827.90Chaperone protein dnaJ OS=Streptococcus thermophil... [more]
DNAJ_STRT16.160e-1827.90Chaperone protein dnaJ OS=Streptococcus thermophil... [more]
DNAJ_PSEHT6.160e-1827.78Chaperone protein dnaJ OS=Pseudoalteromonas halopl... [more]
DNAJ_MARMS6.160e-1829.88Chaperone protein dnaJ OS=Marinomonas sp. (strain ... [more]
DNAJ_GEOSL6.160e-1829.15Chaperone protein dnaJ OS=Geobacter sulfurreducens... [more]
DNAJ_FRAP26.160e-1828.99Chaperone protein dnaJ OS=Francisella philomiragia... [more]
DNAJ_YERE88.045e-1827.69Chaperone protein dnaJ OS=Yersinia enterocolitica ... [more]
DNAJ_ROSCS8.045e-1828.52Chaperone protein dnaJ OS=Roseiflexus castenholzii... [more]
DNAJ_HALHL8.045e-1828.14Chaperone protein dnaJ OS=Halorhodospira halophila... [more]
DNAJ_FUSNP8.045e-1827.82Chaperone protein dnaJ OS=Fusobacterium nucleatum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-C06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728912 ID=EY728912; Name=EY728912; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGCGCGTCTACTCTGAAGCTCTGAAATTTTTTAGTACAAGA
AGCTGTTCGGAAGCGCGCCAAAGAAAAGCGATAACACAAAGTACTATGAG
ATTCTCGGAGTCTCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTTA
TAGGAAAGCCGCCATCAAAAACCATCCTGACAAGGGCGGTGATCCTGAGA
AGTTTAAAGAGTTGGCACAAGCGTATGAGGTTCTGAGTGACCCAGAGAAG
CGTGAAATATATGATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGGG
TGGTGGTGGTGGTGCCCATGACCCATTCGACATATTCCAATCCTTCTTCG
GTGGCAGCCCATTTGGTGGTGGGAGCAGCAGAGGAAGAAGGCAAAGGAGG
GGAGAGGACGTAATCCATCCCCTCAAGGTTTCGTTGGAGGATCTGTACAA
TGGGACATCTAAGAAGCTCTCGCTCTCCCGCAATGTAATCTGCACCAAGT
GCAAAGGGAAGGGGTCTAAGTCAGGTGCATCAATGAAATGTTCTGGCTGC
CAGGGATCTGGAATGAAAGTTTCAATAAGACACCTTGGCCCCTCTATGAT
TCAACAAATGCAGCATCCTTGCAATGAGTGCAAGGGTACTGGAGAAACAA
TCAATGACAAGGATCGCTNGCCACAATGTAAGGGTGAGAAAGTCATTCAG
GAGAAAAAAGTCTTGGAGGTTATTGTTGAAAAGGGGGATGCAAATGGACA
GAAGATTACGTTCCCTGAAGAAACTGATGAAGCGCCCGAACTGTCACCGG
TGACATGGATTTGTTCTACCACAGAAAGACACCCGAAATTAAGCGAAAGG
GTGATGACCTATGGTTGAGCCCACCTGGTCCTGACAGA
back to top