EY728884

Overview
NameEY728884
Unique NameEY728884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728884 vs. ExPASy Swiss-Prot
Match: THDH_SCHPO (Threonine dehydratase, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC1677.03c PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.058e-30
Identity = 69/184 (37.50%), Postives = 111/184 (60.33%), Query Frame = 2
Query:   14 GANMNFDKLRVVTELANVGRQQEAVFATVMPEQSGSFKQFCELLGPMNITEFKYRFSSDKAAVVLYSVGVHTVA-ELEAMQERMESSQLKTYNLTQSDLVKDHLRYLMGGRLSVENEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGHANRLGYDY 562
            GANM+FD+LR + E A++G  +E   +  +PE+ GSF+    ++ P +ITEF YR+ +D  A +  S  V   A EL  + +++    +   +++ ++L K H RYL+GG+ SV  E L R  FPERPG+L KFL +     +ISLFHYR  G   A++L G++V + ++ + H     +GY++
Sbjct:  402 GANMDFDRLRFIAERADLGLNKEVFLSVTIPERPGSFEALHNIITPRSITEFSYRYDNDDYANIYTSFVVKDRATELPLILQQISEQNMVAEDISDNELAKTHARYLIGGKSSVSKERLYRLDFPERPGALCKFLRSIKEVCSISLFHYRNCGGDIASVLAGLRVFDGQVEKLHSVLEEIGYNW 585          
BLAST of EY728884 vs. ExPASy Swiss-Prot
Match: THD1_CICAR (Threonine dehydratase biosynthetic, chloroplastic OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.430e-27
Identity = 70/186 (37.63%), Postives = 105/186 (56.45%), Query Frame = 2
Query:   14 GANMNFDKLRVVTELANVGRQQEAVFATVMPEQSGSFKQFCELL-GPMNITEFKYRFSSDKAAVVLYSVGVHTVAELEAMQERMESSQLKTYNLTQSDLVKDHLRYLMGGRLSVENEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGHANRLGYDYAV 568
            GANMNF KL  V+ELA +G   EA+  T MP Q G FK    L+ G ++ TE  YRF+S + ++++  + +     +E M E M+ S +   N++ ++L   H ++L+GG   V +EV   FI PE+   L KFL+  SP WN++L+ YR QG+  A IL+ I     E+       + LGY Y +
Sbjct:  393 GANMNFRKLHKVSELAVLGSGHEALLGTYMPGQKGCFKTMAGLVHGSLSFTEITYRFTSHRRSILVLMLKLEPWRYIEKMIEMMKYSGVTVLNISHNELAVIHGKHLVGGSAKVSDEVFVEFIIPEK-ADLKKFLEVLSPHWNLTLYRYRNQGDLKATILMVIASFLCEIVIRKNQIDDLGYPYEI 577          
The following BLAST results are available for this feature:
BLAST of EY728884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
THDH_SCHPO1.058e-3037.50Threonine dehydratase, mitochondrial OS=Schizosacc... [more]
THD1_CICAR1.430e-2737.63Threonine dehydratase biosynthetic, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-H02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728884 ID=EY728884; Name=EY728884; organism=Citrus sinensis; type=EST; length=875bp
CCACGCGTCCGGTGGAGCAAACATGAACTTTGATAAACTGAGGGTGGTGA
CAGAACTTGCCAATGTTGGTAGGCAACAGGAAGCTGTGTTTGCAACTGTC
ATGCCAGAGCAGTCCGGGAGTTTCAAACAATTTTGTGAACTTTTGGGGCC
TATGAATATCACTGAGTTCAAATACCGATTTAGTTCTGATAAAGCAGCTG
TGGTTCTCTACAGTGTTGGCGTTCACACGGTTGCTGAACTTGAAGCAATG
CAAGAGCGAATGGAGTCTTCTCAACTTAAAACCTACAATCTCACACAAAG
TGACTTGGTTAAAGATCACCTGAGATATTTGATGGGGGGCAGATTAAGTG
TTGAAAACGAGGTCCTTTGTCGTTTTATTTTCCCTGAGCGGCCTGGTTCT
TTGATGAAGTTCTTGGATGCTTTCAGTCCGCGTTGGAATATTAGCTTGTT
CCATTACCGTGGTCAGGGTGAAACCGGTGCCAACATATTAGTAGGAATCC
AGGTTCCAGAGAATGAGCTGGCTGAGTTTCACGGTCATGCCAACAGGCTT
GGATATGATTATGCAGTTGTACCTGATGANCACAACTTCGAGCTTTTGAT
GCACTGATTAAAGCTTGTCGTGTGATATTAGCTCTCAGTTGGATTGGCCC
AGTAGACACGCTCAATTAGTCAGAGAGAAAAAGGAAGAAAGGGAGNAGGA
NAANCAAAGGGCCTCTAAAATCTAAATACCCTGTATTAGTCGAAAGAACG
GGATCCTGTCTTTACCATGAGAAGGGTTTCCCCCCTAGTTTGGATTAATG
ATATTATGGTGGTCCCTGGTCCCGGGGAAAAGGGGGCCCGTCGGAGTCTA
GGACGGTCGCCTAACGTTTGAGTGT
back to top