EY728866

Overview
NameEY728866
Unique NameEY728866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX41_MOUSE (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Mus musculus GN=Gpx4 PE=1 SV=4)

HSP 1 Score: 134.035 bits (336), Expect = 9.958e-31
Identity = 67/124 (54.03%), Postives = 89/124 (71.77%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 389
            SQ G T+ NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N++I+EFA   +  +F ++ K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEKD+
Sbjct:   71 SQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX42_RAT (Phospholipid hydroperoxide glutathione peroxidase, nuclear OS=Rattus norvegicus GN=Gpx4 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 1.301e-30
Identity = 67/124 (54.03%), Postives = 88/124 (70.97%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 389
            SQ G T+ NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N++I+EFA   +   F ++ K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEKD+
Sbjct:  127 SQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVRFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 249          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX41_RAT (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Rattus norvegicus GN=Gpx4 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 1.301e-30
Identity = 67/124 (54.03%), Postives = 88/124 (70.97%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 389
            SQ G T+ NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N++I+EFA   +   F ++ K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEKD+
Sbjct:   71 SQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVRFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX4_PIG (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Sus scrofa GN=GPX4 PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 4.942e-30
Identity = 67/124 (54.03%), Postives = 87/124 (70.16%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 389
            SQ G T  NYT+L  L+ +Y   GL ILAFPCNQFG QEPG + +I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEKD+
Sbjct:   71 SQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSDAEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX1_SCHPO (Glutathione peroxidase OS=Schizosaccharomyces pombe GN=gpx1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.455e-30
Identity = 62/126 (49.21%), Postives = 84/126 (66.67%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 401
            S+CG T   Y  L  LY KYK++G  IL FPCNQFG QEPG +E+I +F    +   FP+  K++VNGDN  P+Y+ LKS K  L  + IKWNF KFLV+++G V+ERY+  + P  +E DI+ +L
Sbjct:   34 SKCGFT-PQYKGLEALYQKYKDRGFIILGFPCNQFGNQEPGSDEEIAQFCQKNYGVTFPVLAKINVNGDNVDPVYQFLKSQKKQLGLERIKWNFEKFLVNRQGQVIERYSSISKPEHLENDIESVL 158          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX42_MOUSE (Phospholipid hydroperoxide glutathione peroxidase, nuclear OS=Mus musculus GN=Gpx4 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 1.101e-29
Identity = 65/124 (52.42%), Postives = 88/124 (70.97%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 389
            SQ G T+ NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N++I+EFA   +  +F ++ K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G  V+RY P   P  IE+D+
Sbjct:  127 SQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCEVKRYGPMEEPQVIERDL 249          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: BSAA_STAES (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 12228) GN=bsaA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.101e-29
Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 401
            S+CG T   +  L +LYD+YK+Q   IL FPCNQFG QEPG  E+  +     +   FPI +KVDV GDN  PL+  L ++  G+  + IKWNF+KFL+D+EGNV++R++P   P  I+ +I+KLL
Sbjct:   34 SECGFT-PQFEGLQKLYDEYKDQRFIILGFPCNQFGGQEPGSGEEAAQNCKINYGVTFPIHEKVDVKGDNQHPLFHFLTNAAKGMINEKIKWNFTKFLIDREGNVIKRFSPQKKPEQIKTEIEKLL 158          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPO_SYNY3 (Putative glutathione peroxidase OS=Synechocystis sp. (strain PCC 6803) GN=slr1171 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.464e-29
Identity = 63/132 (47.73%), Postives = 86/132 (65.15%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLF------GDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 401
            SQCG T   Y  L  LY+++ ++G  +L FPCNQFG QEPG + +I+ F  TR+   FP+F+KV+VNG NA PL+K L ++  G+        + IKWNF+KFLVD++G VV+RY     P  I  DI+KLL
Sbjct:   39 SQCGFT-PQYQGLQALYNRFGDRGFTVLGFPCNQFGQQEPGGSGEIKNFCETRYGVTFPLFEKVEVNGPNAHPLFKFLTAASPGMAIPFLGGAEDIKWNFTKFLVDRQGKVVKRYGSIAKPDEIAADIEKLL 169          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: BSAA_STAEQ (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=bsaA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.998e-27
Identity = 58/121 (47.93%), Postives = 80/121 (66.12%), Query Frame = 3
Query:   42 NSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 404
            N  + +L  LY KY   GLEIL+FPCN F  QEPG  + I      +F   FPI  K++VNG++  PLY  LK  + GLFG  IKWNF+KF+VD++GN+V+R+ P  +P  +EK I++LL+
Sbjct:   38 NDQFNKLEMLYKKYHKYGLEILSFPCNDFNNQEPGLIKDIYRVYKYKFGITFPIHAKINVNGEHEHPLYTLLKCKQPGLFGSQIKWNFTKFVVDQQGNIVKRFLPCDNPNQMEKLIRQLLK 158          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX1_CHLRE (Glutathione peroxidase 1, mitochondrial OS=Chlamydomonas reinhardtii GN=GPX PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.916e-27
Identity = 67/130 (51.54%), Postives = 82/130 (63.08%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR--FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLET 407
            S+ GLT +NY E + L  KY    L I+AFPCNQFG QEPG N +I+ FA  R    A   + DKVDVNG NA+P+Y  LK + G      I WNF KFLV  +G V  RYAPTT PLS+EK I +L+ +
Sbjct:   73 SKUGLTAANYKEFATLLGKYPATDLTIVAFPCNQFGGQEPGTNAEIKAFASARGFSGAGALLMDKVDVNGANASPVYNFLKVAAGDT--SDIGWNFGKFLVRPDGTVFGRYAPTTGPLSLEKYIVELINS 200          
The following BLAST results are available for this feature:
BLAST of EY728866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
GPX41_MOUSE9.958e-3154.03Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX42_RAT1.301e-3054.03Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX41_RAT1.301e-3054.03Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_PIG4.942e-3054.03Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX1_SCHPO6.455e-3049.21Glutathione peroxidase OS=Schizosaccharomyces pomb... [more]
GPX42_MOUSE1.101e-2952.42Phospholipid hydroperoxide glutathione peroxidase,... [more]
BSAA_STAES1.101e-2947.62Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPO_SYNY35.464e-2947.73Putative glutathione peroxidase OS=Synechocystis s... [more]
BSAA_STAEQ2.998e-2747.93Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX1_CHLRE3.916e-2751.54Glutathione peroxidase 1, mitochondrial OS=Chlamyd... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-F05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728866 ID=EY728866; Name=EY728866; organism=Citrus sinensis; type=EST; length=840bp
CCACGCGTCCGCCCACGCGTCCGTCACAGTGTGGCTTGACCAATTCAAAC
TACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGAATCAAGGCTTGGA
GATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAAGAGCCAGGAGACA
ATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAAGGCTGAGTTTCCC
ATATTTGATAAGGTTGATGTTAATGGTGATAATGCTGCTCCTTTATACAA
GCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGACAGCATCAAGTGGA
ACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGTTGTTGAGCGTTAT
GCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGATATAAAGAAACTTCT
GGAGACTGCTTAACCGCTGCTACAACTTGCATGATCAGCTTCTTGCTAAT
AAAACTAGAGTATCATGCTGTAGAAGCACTCTGGTGGAAATATATGTTTA
GCTTTGTCTCAATATCTGTAGACATATAATGAAGTTTCCTAATGTCGAAG
TAAATTCAGTTGATAAGTGCTTGGTTTGTATGTAATGAATGTTCCCAGTT
TTTGTAATTCAAAATAAAAGGTGCTTGGTGAGACTCTACNGANNANANNN
NANNNNANNNANNANNNAAAAANAAGGGGGCCGTCTAGAGGATCACTTAG
TACGCTGCTGCGAGTCTACTCTCTTATGTACTAATCATCATGGCGCGTTA
ACTCTGATGGAACTGCGTACCATATCCTGCACATCCCTCGCGTGTATACG
AAGCGACGATGCTCACTGCACAGAGACAGCCGTGTCGCTC
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