EY728866

Overview
NameEY728866
Unique NameEY728866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX6_RAT (Glutathione peroxidase 6 OS=Rattus norvegicus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.491e-15
Identity = 56/146 (38.36%), Postives = 74/146 (50.68%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKS----------SKGGLFGD-----SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 401
            S CGLT + Y EL+ L ++ +   + +L FPCNQFG QEPG N +I       R    F   F +F+K DVNGDN   ++  LKS          S   LF D      I+WNF KFLV  +G  V R+   T    ++ DI + L
Sbjct:   71 SFCGLT-ATYPELNTLQEELRPFNVSVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGFVPNFQLFEKGDVNGDNEQKVFSFLKSSCPPTSELLGSPEHLFWDPMKVHDIRWNFEKFLVGPDGAPVMRWFHQTPVRVVQSDIMEYL 215          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX6_MOUSE (Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.660e-15
Identity = 55/146 (37.67%), Postives = 74/146 (50.68%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGD------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 401
            S CGLT + Y EL+ L ++ K   + +L FPCNQFG QEPG N +I       R    +   F +F+K DVNGDN   ++  LK+S      LFG              I+WNF KFLV  +G  V R+   T    ++ DI + L
Sbjct:   71 SFCGLT-ATYPELNTLQEELKPFNVTVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGYVPNFQLFEKGDVNGDNEQKVFSFLKNSCPPTSELFGSPEHLFWDPMKIHDIRWNFEKFLVGPDGVPVMRWFHHTPVRIVQSDIMEYL 215          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX6_HUMAN (Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.000e-14
Identity = 50/140 (35.71%), Postives = 74/140 (52.86%), Query Frame = 3
Query:   45 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI---QEFAC--TRFKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 404
            + Y EL+ L ++ KN G+ +LAFPCNQFG QEPG N +I    ++ C  + F   F +F+K DVNG+    ++  LK+S      L G S            I+WNF KFLV  +G  V  +       +++ DI + L+
Sbjct:   77 AQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLK 216          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX8_DANRE (Probable glutathione peroxidase 8 OS=Danio rerio GN=gpx8 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 3
Query:   36 LTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 401
            LT  +Y  L +L+ +       +LAFPC+Q+G  E G + +I+ FA + +   FPIF+K+ + G  A P ++ L  S   +     +WNF KFLV  EG VV  + P      I K+   L+
Sbjct:   82 LTEQSYRALQELHRELGTSHFNVLAFPCSQYGDTESGTSREIEAFAKSNYGVTFPIFNKIKIMGSEAEPAFRFLTDSVQKI----PRWNFWKFLVSPEGQVVRFWKPEEPVSDIRKEATTLV 199          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX3_CAEEL (Glutathione peroxidase OS=Caenorhabditis elegans GN=C11E4.2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14
Identity = 49/133 (36.84%), Postives = 68/133 (51.13%), Query Frame = 3
Query:   30 CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK--------AEFPIFDKVDVNGDNAAPLYKHLKSS------KGGLFGD---------SIKWNFSKFLVDKEGNVVERYAPT 359
            C  T   YT+ + + +KY+ QGL ++AFPCNQF  QEP +N ++     T  +         E  I+ K+DVNGDN  PLY+ +K S      K G   +          I WNF KFL+D+ G    R+ PT
Sbjct:   73 CAYTQQ-YTDFNPMLEKYQAQGLTLVAFPCNQFYLQEPAENHELMN-GLTYVRPGNGWTPHQELHIYGKIDVNGDNHHPLYEFVKESCPQTVDKIGKTDELMYNPVRPSDITWNFEKFLIDRNGQPRFRFHPT 203          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX1_MACFU (Glutathione peroxidase 1 OS=Macaca fuscata fuscata GN=GPX1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14
Identity = 51/150 (34.00%), Postives = 73/150 (48.67%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 401
            S  G T  +YT++++L  +   +GL +L FPCNQFG QE   NE+I       R    F+  F +F+K +VNG  A PL+  L+ +      D+                   + WNF KFLV  +G  V RY+     + IE DI+ LL
Sbjct:   45 SLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLIAWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDIEPDIEALL 194          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX3_RAT (Glutathione peroxidase 3 OS=Rattus norvegicus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.911e-14
Identity = 54/142 (38.03%), Postives = 73/142 (51.41%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKS----------SKGGLFGD-----SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 389
            S  GLT+  Y EL+ L ++    GL IL FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+          S G LF +      I+WNF KFLV  +G  + R+   T+  +++ DI
Sbjct:   71 SYUGLTDQ-YLELNALQEELGPFGLVILGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPIMRWYHRTTVSNVKMDI 211          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX1_BOVIN (Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.911e-14
Identity = 50/152 (32.89%), Postives = 74/152 (48.68%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR-------FKAEFPIFDKVDVNGDNAAPLYKHLKS-------------------SKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 401
            S  G T  +YT+++ L  +   +GL +L FPCNQFG QE   NE+I    C +       F+  F +F+K +VNG+ A PL+  L+                    +   +  + + WNF KFLV  +G  V RY+     + IE DI+ LL
Sbjct:   50 SLUGTTVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGHQENAKNEEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLREVLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEPDIETLL 199          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX3_HYLLA (Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.802e-14
Identity = 54/142 (38.03%), Postives = 71/142 (50.00%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 389
            S  GLT   Y EL+ L ++    GL IL FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV  +G  + R+   T+  +++ DI
Sbjct:   71 SYUGLTGQ-YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGTPIMRWHHRTTVSNVKMDI 211          
BLAST of EY728866 vs. ExPASy Swiss-Prot
Match: GPX3_CEBAP (Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.802e-14
Identity = 54/142 (38.03%), Postives = 72/142 (50.70%), Query Frame = 3
Query:   24 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 389
            S  GLT   Y EL+ L ++    GL++L FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV  +G  V R+   T+  +++ DI
Sbjct:   71 SYUGLTGQ-YIELNALQEELAPFGLDLLGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPVMRWHHRTTISNVKMDI 211          
The following BLAST results are available for this feature:
BLAST of EY728866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
GPX6_RAT4.491e-1538.36Glutathione peroxidase 6 OS=Rattus norvegicus GN=G... [more]
GPX6_MOUSE7.660e-1537.67Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 P... [more]
GPX6_HUMAN1.000e-1435.71Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 P... [more]
GPX8_DANRE1.307e-1434.43Probable glutathione peroxidase 8 OS=Danio rerio G... [more]
GPX3_CAEEL2.229e-1436.84Glutathione peroxidase OS=Caenorhabditis elegans G... [more]
GPX1_MACFU2.229e-1434.00Glutathione peroxidase 1 OS=Macaca fuscata fuscata... [more]
GPX3_RAT2.911e-1438.03Glutathione peroxidase 3 OS=Rattus norvegicus GN=G... [more]
GPX1_BOVIN2.911e-1432.89Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=... [more]
GPX3_HYLLA3.802e-1438.03Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 ... [more]
GPX3_CEBAP3.802e-1438.03Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-F05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728866 ID=EY728866; Name=EY728866; organism=Citrus sinensis; type=EST; length=840bp
CCACGCGTCCGCCCACGCGTCCGTCACAGTGTGGCTTGACCAATTCAAAC
TACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGAATCAAGGCTTGGA
GATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAAGAGCCAGGAGACA
ATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAAGGCTGAGTTTCCC
ATATTTGATAAGGTTGATGTTAATGGTGATAATGCTGCTCCTTTATACAA
GCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGACAGCATCAAGTGGA
ACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGTTGTTGAGCGTTAT
GCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGATATAAAGAAACTTCT
GGAGACTGCTTAACCGCTGCTACAACTTGCATGATCAGCTTCTTGCTAAT
AAAACTAGAGTATCATGCTGTAGAAGCACTCTGGTGGAAATATATGTTTA
GCTTTGTCTCAATATCTGTAGACATATAATGAAGTTTCCTAATGTCGAAG
TAAATTCAGTTGATAAGTGCTTGGTTTGTATGTAATGAATGTTCCCAGTT
TTTGTAATTCAAAATAAAAGGTGCTTGGTGAGACTCTACNGANNANANNN
NANNNNANNNANNANNNAAAAANAAGGGGGCCGTCTAGAGGATCACTTAG
TACGCTGCTGCGAGTCTACTCTCTTATGTACTAATCATCATGGCGCGTTA
ACTCTGATGGAACTGCGTACCATATCCTGCACATCCCTCGCGTGTATACG
AAGCGACGATGCTCACTGCACAGAGACAGCCGTGTCGCTC
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