EY728837 | Citrus Genome Database

Overview


Name	EY728837
Unique Name	EY728837
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	901

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_SALNS (Glucose-1-phosphate adenylyltransferase OS=Salmonella newport (strain SL254) GN=glgC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.892e-20
Identity = 67/182 (36.81%), Postives = 92/182 (50.55%), Query Frame = 2

Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR--DK-FPGANDFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  K ATAFG+M +DE  +II+F EKP      AM  D +              +ASMGIYV   D +  LL   DK    ++DFG ++IP  T  GM   AY +             + YW D+GT+EA++ ANL +     P+   YD++ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIKEATAFGVMAVDESDKIIDFVEKPANP--PAMPGDAS------------KSLASMGIYVFDADYLYELLAADDKDDASSHDFGKDIIPKITREGM---AYAHPFPLSCVQSDPQAEPYWRDVGTLEAYWKANLDLA-SVTPELDMYDQNWPIRTHMESLPPAKFV 319

HSP 2 Score: 24.2534 bits (51), Expect = 1.892e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_SALHS (Glucose-1-phosphate adenylyltransferase OS=Salmonella heidelberg (strain SL476) GN=glgC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.892e-20
Identity = 67/182 (36.81%), Postives = 92/182 (50.55%), Query Frame = 2

Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR--DK-FPGANDFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  K ATAFG+M +DE  +II+F EKP      AM  D +              +ASMGIYV   D +  LL   DK    ++DFG ++IP  T  GM   AY +             + YW D+GT+EA++ ANL +     P+   YD++ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIKEATAFGVMAVDESDKIIDFVEKPANP--PAMPGDAS------------KSLASMGIYVFDADYLYELLAADDKDDASSHDFGKDIIPKITREGM---AYAHPFPLSCVQSDPQAEPYWRDVGTLEAYWKANLDLA-SVTPELDMYDQNWPIRTHMESLPPAKFV 319

HSP 2 Score: 24.2534 bits (51), Expect = 1.892e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_SALEP (Glucose-1-phosphate adenylyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=glgC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.892e-20
Identity = 67/182 (36.81%), Postives = 92/182 (50.55%), Query Frame = 2

Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR--DK-FPGANDFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  K ATAFG+M +DE  +II+F EKP      AM  D +              +ASMGIYV   D +  LL   DK    ++DFG ++IP  T  GM   AY +             + YW D+GT+EA++ ANL +     P+   YD++ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIKEATAFGVMAVDESDKIIDFVEKPANP--PAMPGDAS------------KSLASMGIYVFDADYLYELLAADDKDDASSHDFGKDIIPKITREGM---AYAHPFPLSCVQSDPQAEPYWRDVGTLEAYWKANLDLA-SVTPELDMYDQNWPIRTHMESLPPAKFV 319

HSP 2 Score: 24.2534 bits (51), Expect = 1.892e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_SALCH (Glucose-1-phosphate adenylyltransferase OS=Salmonella choleraesuis GN=glgC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.892e-20
Identity = 67/182 (36.81%), Postives = 92/182 (50.55%), Query Frame = 2

Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR--DK-FPGANDFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  K ATAFG+M +DE  +II+F EKP      AM  D +              +ASMGIYV   D +  LL   DK    ++DFG ++IP  T  GM   AY +             + YW D+GT+EA++ ANL +     P+   YD++ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIKEATAFGVMAVDESDKIIDFVEKPANP--PAMPGDAS------------KALASMGIYVFDADYLYELLAADDKDDASSHDFGKDIIPKITREGM---AYAHPFPLSCVQSDPQAEPYWRDVGTLEAYWKANLDLA-SVTPELDMYDQNWPIRTHMESLPPAKFV 319

HSP 2 Score: 24.2534 bits (51), Expect = 1.892e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_SALA4 (Glucose-1-phosphate adenylyltransferase OS=Salmonella agona (strain SL483) GN=glgC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.892e-20
Identity = 67/182 (36.81%), Postives = 92/182 (50.55%), Query Frame = 2

Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR--DK-FPGANDFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  K ATAFG+M +DE  +II+F EKP      AM  D +              +ASMGIYV   D +  LL   DK    ++DFG ++IP  T  GM   AY +             + YW D+GT+EA++ ANL +     P+   YD++ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIKEATAFGVMAVDESDKIIDFVEKPANP--PAMPGDAS------------KALASMGIYVFDADYLYELLAADDKDDASSHDFGKDIIPKITREGM---AYAHPFPLSCVQSDPQAEPYWRDVGTLEAYWKANLDLA-SVTPELDMYDQNWPIRTHMESLPPAKFV 319

HSP 2 Score: 24.2534 bits (51), Expect = 1.892e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_KLEP7 (Glucose-1-phosphate adenylyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.461e-20
Identity = 65/182 (35.71%), Postives = 89/182 (48.90%), Query Frame = 2

Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  + A+AFG+M +DE  +IIEF EKP      AM  D T              +ASMGIYV     +  LL +     N   DFG ++IP  T  GM   AY +             + YW D+GT+EA++ ANL +     P+   YD++ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIEEASAFGVMAVDENEKIIEFVEKPANP--PAMPTDPT------------KSLASMGIYVFDAAYLYELLEEDDRNENSSHDFGKDIIPKITEAGM---AYAHPFPLSCVQSDPNAEPYWRDVGTLEAYWKANLDLA-SVTPELDMYDQNWPIRTHMESLPPAKFV 319

HSP 2 Score: 24.2534 bits (51), Expect = 2.461e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_ESCF3 (Glucose-1-phosphate adenylyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.461e-20
Identity = 64/182 (35.16%), Postives = 91/182 (50.00%), Query Frame = 2

Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  + A+AFG+M +D++ +IIEF EKP      +M  D T              +ASMGIYV   D +  LL +     N   DFG ++IP  T  GM   AY +             + YW D+GT+EA++ ANL +    +P+   YD+  PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIQEASAFGVMAVDQDEKIIEFVEKPANP--PSMPNDPT------------RSLASMGIYVFDADYLYELLEEDDNDENSSHDFGKDIIPKITQAGM---AYAHPFPLSCVQSDPDSEPYWRDVGTLEAYWKANLDLA-SVVPELDMYDQHWPIRTYNESLPPAKFV 319

HSP 2 Score: 24.2534 bits (51), Expect = 2.461e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_ANASK (Glucose-1-phosphate adenylyltransferase OS=Anaeromyxobacter sp. (strain K) GN=glgC PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.464e-20
Identity = 62/198 (31.31%), Postives = 105/198 (53.03%), Query Frame = 2

Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML-NLLRDKF--PGANDFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIG 580
            ++++ H +  A++TVAA+P+  + A+ FG++++D +GR+I F EKP+           TI G D  R      +ASMG Y+ S D ++  ++RD      A+DFG  ++    S+  R + Y+YD              GYW D+G+I+A++ AN+ +     P FS Y+   PI+T     PP+K +  +  D  +G
Sbjct:  133 QMLEFHLDRKAELTVAAVPIPVQEASEFGIIEVDADGRMIGFVEKPQ-------SAPKTIPG-DPTRC-----LASMGNYLFSTDALVQEIVRDAGDPSSAHDFGKSIV---ASMYQRKRVYVYDFARNVVPGQTERERGYWRDVGSIDAYFQANMDLVAVD-PVFSLYNDEWPIFTVQYNYPPAKFVFNNEHDHRVG 313

HSP 2 Score: 28.4906 bits (62), Expect = 2.464e-20
Identity = 8/34 (23.53%), Postives = 22/34 (64.71%), Query Frame = 3

Query:  576 LGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLL 677
            + EGC+I    +HHS++  +  ++  A ++++++
Sbjct:  320 VSEGCIISGSHVHHSILSPKVRVNSYATVDESIV 353

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBVY (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio vulnificus (strain YJ016) GN=glgC1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.465e-20
Identity = 57/186 (30.65%), Postives = 93/186 (50.00%), Query Frame = 2

Query:   38 EIIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL---RDKFPGANDFGSEVIPGATSIG---------MRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD 559
            +++  H+E  A +TV+AL M    A+ FG++++D EGR++ F EKP     K++  D                + SMG Y+   DV+   L    D    ++DFG ++IP     G          R+     + YW D+GTI+A++ A++ + K   P FS Y+R  P++T    LPP+   D+D
Sbjct:  133 QMLSFHKEKQAALTVSALRMPLAEASQFGVIEVDAEGRMVGFEEKPSAP--KSIPGDPDFA------------LVSMGNYIFEADVLFAELIEDADNENSSHDFGKDIIPKMFPRGDVFVYDFSQNRISGEKAEVYWRDVGTIDAYWQAHMDLLKTDAP-FSLYNRKWPLHTYQPPLPPATFTDSD 303

HSP 2 Score: 30.0314 bits (66), Expect = 2.465e-20
Identity = 13/41 (31.71%), Postives = 24/41 (58.54%), Query Frame = 3

Query:  585 GCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGSRLL*DGC 707
            G  ++  +I  SV+G RS I+    I +++L+G   + +GC
Sbjct:  317 GSYVRGSRIEKSVLGFRSNIASACDISESILLGDVKVGEGC 357

BLAST of EY728837 vs. ExPASy Swiss-Prot
Match: GLGC_SHIBS (Glucose-1-phosphate adenylyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.201e-20
Identity = 62/182 (34.07%), Postives = 92/182 (50.55%), Query Frame = 2

Query:   53 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRVQAYLY-------------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML 550
            H E  A  TVA +P+  + A+AFG+M +DE  +IIEF EKP                + ++ +K    +ASMGIYV   D +  LL +     N   DFG ++IP  T  G+   AY +             + YW D+GT++A++ ANL +    +P+   YDR+ PI T    LPP+K +
Sbjct:  156 HVEKGARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPP-----------SMPNDPSKS---LASMGIYVFDADYLYELLEEDDRDENSSHDFGKDLIPKITEAGL---AYAHPFPLSCVQSDPDAEPYWRDVGTLKAYWKANLDLA-SVVPELDMYDRNWPIRTYNESLPPAKFV 319

HSP 2 Score: 24.2534 bits (51), Expect = 3.201e-20
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:   12 DHLYRMDYER-LFRHTEK 62
            DH+Y+ DY R L  H EK
Sbjct:  142 DHIYKQDYSRMLIDHVEK 159

The following BLAST results are available for this feature:

BLAST of EY728837 vs. ExPASy Swiss-Prot

BLAST of EY728837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310


Match Name	E-value	Identity	Description
GLGC_SALNS	1.892e-20	36.81	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]
GLGC_SALHS	1.892e-20	36.81	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]
GLGC_SALEP	1.892e-20	36.81	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]
GLGC_SALCH	1.892e-20	36.81	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]
GLGC_SALA4	1.892e-20	36.81	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]
GLGC_KLEP7	2.461e-20	35.71	Glucose-1-phosphate adenylyltransferase OS=Klebsie...	[more]
GLGC_ESCF3	2.461e-20	35.16	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ANASK	2.464e-20	31.31	Glucose-1-phosphate adenylyltransferase OS=Anaerom...	[more]
GLGC1_VIBVY	2.465e-20	30.65	Glucose-1-phosphate adenylyltransferase 1 OS=Vibri...	[more]
GLGC_SHIBS	3.201e-20	34.07	Glucose-1-phosphate adenylyltransferase OS=Shigell...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-009-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY728837 ID=EY728837; Name=EY728837; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGGATCATTTGTACCGAATGGACTATGAGAGATTATTCAGG
CACACAGAGAAACTGATGCGGATATCACAGTAGCTGCGCTGCCAATGGAT
GAAAAACGGGCTACTGCTTTTGGTCTGATGAAGATCGATGAAGAGGGACG
CATAATTGAATTTTCTGAGAAACCAAAAGGAGAGCAACTTAAAGCTATGA
AGGTTGATACCACCATATTAGGTCTTGATGATGAGAGAGCTAAAGAGATG
CCTTACATAGCAAGTATGGGTATTTATGTCATCAGCAAAGATGTGATGTT
AAATCTGCTAAGGGATAAATTTCCTGGAGCTAATGATTTTGGAAGTGAAG
TTATCCCTGGTGCAACTTCCATTGGGATGAGAGTGCAAGCATATTTATAT
GATGGCTACTGGGAAGACATTGGAACAATTGAGGCTTTCTACAATGCGAA
TCTGGGGATCACCAAAAAGCCAATTCCGGATTTCAGCTTCTATGACCGTT
CTGCTCCAATCTATACACAGCCTAGATATCTACCTCCTTCTAAGATGCTT
GATGCTGATGTCACTGATAGTGTAATTGGGTGAAGGCTGTGTGATTAAGA
ATTGCAAAATTCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAA
GGTGCAATTATCGAAGATACTTTACTTATGGGGAGCAGATTATTATGAGA
CGGATGCGGACAGGAGGTTTTTGGGCTGCAAGGGTATTGTTCCATTTGGT
ATTGGCAGAATTCTCACATCAAGAGAGCCATAATCCACANNATGCTCGAA
TGGGGGATTATGTGAAAATTCTTCACAGTGACAGTGTGCAAAAACCACCA
GGGAAACAGATGGATACTCATCAAAACCGGGATTGTTCCATAATCAGGAT
G